View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_high_14 (Length: 323)
Name: NF18037_high_14
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 35523724 - 35524032
Alignment:
| Q |
9 |
acatcatcaaatggcaccgtcgtgaaaaccgttgggaggactttgccgtcacttcttctccacacaggttaacactcacaacctcttactttgtcacact |
108 |
Q |
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|||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35523724 |
acatcatcaaatggcaccatcatcaaaaccgttgggaggactttgccgtcacttcttctccacacaggttaacactcacaacctctttctttgtcacact |
35523823 |
T |
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| Q |
109 |
atctatgagaaattcttaggtgaactctcacccaatacgtccttcttttggctgagagttcacacacaaaagaaatttagnnnnnnnngtctctcacaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| | |
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| T |
35523824 |
atctatgagaaattcttaggtgaactctcacccaatacgttcttcttttgggtgagagttcacacacaaaagaaatttaattttttttgtctctcacata |
35523923 |
T |
|
| Q |
209 |
ctctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcctatgaaaagttgatgcggttgatttggcagaggtgatga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
35523924 |
ctctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcctacgaaaagttgatacggttgatttggcagaggtgatga |
35524023 |
T |
|
| Q |
309 |
tgatgatgt |
317 |
Q |
| |
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||||||||| |
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| T |
35524024 |
tgatgatgt |
35524032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 35518126 - 35518208
Alignment:
| Q |
9 |
acatcatcaaatggcaccgtcgtgaaaaccgttgggaggactttgccgtcacttcttctccacacaggttaacactcacaacc |
91 |
Q |
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| T |
35518126 |
acatcatcaaatggcaccgtcatgagaaccgttgggtggactttgccgtcacttcttcttcacacaggttaacactctcaacc |
35518208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 43359083 - 43359155
Alignment:
| Q |
198 |
tctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcct |
270 |
Q |
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| T |
43359083 |
tctctcacacactctcacatgagggtgatacattgtgtgtatggagaaaatggtgtcaatgaaacattatcct |
43359155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 37025665 - 37025637
Alignment:
| Q |
115 |
gagaaattcttaggtgaactctcacccaa |
143 |
Q |
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| T |
37025665 |
gagaaattcttaggtgaactctcacccaa |
37025637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 15066092 - 15066041
Alignment:
| Q |
197 |
gtctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaag |
248 |
Q |
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| T |
15066092 |
gtctctcacacactctcacatgagagtggtacattgtatgtatggaaaaaag |
15066041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 34311285 - 34311235
Alignment:
| Q |
197 |
gtctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaa |
247 |
Q |
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||||||||| ||||||| | ||||| ||||||||| ||||||||||||||| |
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| T |
34311285 |
gtctctcacgcactctcacgtgagggtggtacattatgtgtatggagaaaa |
34311235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 13276541 - 13276472
Alignment:
| Q |
202 |
tcacacactctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatccta |
271 |
Q |
| |
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|||||||||||| |||| | |||||||| |||||||||||||||||| || || ||||||||||||| |
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| T |
13276541 |
tcacacactctcacatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatccta |
13276472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 19989347 - 19989419
Alignment:
| Q |
197 |
gtctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcct |
270 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||||||||| |||||||| ||| || |||||||||||| |
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| T |
19989347 |
gtctctcacacactctcacatgagagtggtacaatgtgtgtat-gagaaaagagtgtctatgaaacattatcct |
19989419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 46135636 - 46135685
Alignment:
| Q |
198 |
tctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaa |
247 |
Q |
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|||||||||||||||| ||| || ||||||| ||||||||||||||||| |
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| T |
46135636 |
tctctcacacactctcacataggggtggtacaatgtgtgtatggagaaaa |
46135685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 23045359 - 23045331
Alignment:
| Q |
115 |
gagaaattcttaggtgaactctcacccaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
23045359 |
gagaaattcttaggtgaactctcacccaa |
23045331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 48034879 - 48034808
Alignment:
| Q |
197 |
gtctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcc |
269 |
Q |
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||||||||||||||||| ||||| | ||||||| |||||||||||| ||||| || |||||||||||||| |
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| T |
48034879 |
gtctctcacacactctcacatgaag-tggtacaatgtgtgtatggaaaaaagtgtgtacataaaacattatcc |
48034808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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