View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_high_7 (Length: 430)
Name: NF18037_high_7
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 27053803 - 27053406
Alignment:
| Q |
19 |
acattatccacaaagttgccggaattctgctctgccgcacacctcttctgcttcccgaacataaatccacaactttgtcgtaaacccattctcagaggat |
118 |
Q |
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| T |
27053803 |
acattatccacaaagttgccggaattctgctctgccgcacatctcttctgcttcccgaacataaatccacaactttgtcgtaaacccgttctcagaggat |
27053704 |
T |
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| Q |
119 |
taggaaccaacattttcaaaggatatggtaaaggagttgatttagataacaagtttagcttcgacaattacggttttactaaccctttcaaagattacgc |
218 |
Q |
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| T |
27053703 |
taggaaccaacattttcaaaggatatggtaaaggagttgatttagataacaagtttagcttcgacaattacggttttactaaccctttcaaagattacgc |
27053604 |
T |
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| Q |
219 |
caaaagaggtatttcattcggcatctacactaaatcttcttcaactaactccgttaccagtttggtggttgaaccaggtaagtttttccgcgaaacgatg |
318 |
Q |
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| T |
27053603 |
caaaagaggtatttcattcggcatctacactaaatcttcttcaactaactccgttaccagtttggtggttgaaccaggtaagtttttccgcgaaaggatg |
27053504 |
T |
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| Q |
319 |
ttgaaggaagggactgttatgcctatgccagatataagggataagttaccacctaggtcgtttttgccccgttccattttgatcaaattgccctttgc |
416 |
Q |
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| T |
27053503 |
ttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgtttttgccacgttccattttgatcaaattgccctttgc |
27053406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 284 - 416
Target Start/End: Complemental strand, 27065980 - 27065848
Alignment:
| Q |
284 |
tggttgaaccaggtaagtttttccgcgaaacgatgttgaaggaagggactgttatgcctatgccagatataagggataagttaccacctaggtcgttttt |
383 |
Q |
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| T |
27065980 |
tggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
27065881 |
T |
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| Q |
384 |
gccccgttccattttgatcaaattgccctttgc |
416 |
Q |
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| T |
27065880 |
gcctcgttccattttgaccaaattgccatttgc |
27065848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 416
Target Start/End: Complemental strand, 27079696 - 27079565
Alignment:
| Q |
285 |
ggttgaaccaggtaagtttttccgcgaaacgatgttgaaggaagggactgttatgcctatgccagatataagggataagttaccacctaggtcgtttttg |
384 |
Q |
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| T |
27079696 |
ggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccgccaaggtcgttttta |
27079597 |
T |
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| Q |
385 |
ccccgttccattttgatcaaattgccctttgc |
416 |
Q |
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| T |
27079596 |
ccacgtaccattttgaccaaattaccctttgc |
27079565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 27066986 - 27066936
Alignment:
| Q |
25 |
tccacaaagttgccggaattctgctctgccgcacacctcttctgcttcccg |
75 |
Q |
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| T |
27066986 |
tccacaaagctgccggaattctgctccgccgcccatctcttctgcttcccg |
27066936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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