View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18037_high_9 (Length: 383)
Name: NF18037_high_9
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_high_9 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 31910433 - 31910067
Alignment:
| Q |
17 |
atatggtgctagaatgtaaaatttgtgaaagagtgtaatagagattgagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcaggtc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31910433 |
atatggtgctagaatgtaaaatttgtgaaagagtgtaatagagattgagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcagctc |
31910334 |
T |
|
| Q |
117 |
ccataattctatgctagcaaacatcatagataagttacaataaaagaaaaagattcagctgtggtgagatacaaaagaaaaagataataaatgtgggtta |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31910333 |
ccacaattctatgctagcaaacatcatagataagttacaataaaagaaaaagattcagctgtggtgagatacaaaagaaaaagataataaatgtgggtta |
31910234 |
T |
|
| Q |
217 |
cattacaccaaaatttattgaagagtagtccagccccaatgttgaacttctgaatatgtttaactgaaccatcatgagtgcattatgcatccacaaggac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31910233 |
cattacaccaaaatttattgaagagtagtccatccccaatgttgaacttctgaatatgtttaactgaaccatcatgagtgcattctgcatccacaaggac |
31910134 |
T |
|
| Q |
317 |
ctgaatcaaatcccaacagaaacagatgataaaattttaagtgtgaacgaaagcaaaaaactatgca |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31910133 |
ctgaatcaaatcccaacagaaacagatgataaaattttaagtgtgaacgaaagcgaaaaactatgca |
31910067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 31901670 - 31901580
Alignment:
| Q |
245 |
tccagccccaatgttgaa-cttctgaatatgtttaactgaaccatcatgagtgcattatgcatccacaaggacctgaatcaaatcccaaca |
334 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31901670 |
tccagccccattgttcaaacttctgaatatgtttaattgagccatcatgagtgcattctgcatccacaaggacctgaatcaaatcccaaca |
31901580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 31903049 - 31902967
Alignment:
| Q |
65 |
gattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcaggtcccataattctatgctagcaaacatcatagat |
147 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||| |||||||||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
31903049 |
gattgaatgaataatgcgatctgttgtggaccatggtccattttagtcgttcccaggattctatgctagcaaacatcatagat |
31902967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 13643290 - 13643241
Alignment:
| Q |
63 |
gagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagca |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| | ||| |||||||||| |
|
|
| T |
13643290 |
gagattgaatgaaaaatgtgatatgttgtggacaatggttcattttagca |
13643241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University