View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_low_1 (Length: 669)
Name: NF18037_low_1
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 18199149 - 18198791
Alignment:
| Q |
15 |
cataggtcatggatacagacataacacagtaaaaactgaaataaatctcataatcttctggaacaagaggagaaacagaacagaagtagcatgcttctta |
114 |
Q |
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| T |
18199149 |
cataggtcatcgatacagacataacacagtaaaaactgaaataaatctca--atcttctggaaccagagtagaaacaaaacagaagtggcatgcttctta |
18199052 |
T |
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| Q |
115 |
ttttattctaaaacattagatttcagtccaaaactcttt---catttcctttttctttttaccttgttatttatcctctctcatttacataatatgtgca |
211 |
Q |
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| T |
18199051 |
ttttattctaaaacattatatttcagtccaaaactcttttttcatttcctttgtctttt--ccttgttatttatcctgtctcatttacataatatgtgca |
18198954 |
T |
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| Q |
212 |
tcaaagatatttactcaacaaagttatctaattctgaaagatagcacctttgcagaatatgtactagactatgatctacttcagaaacattttggaatct |
311 |
Q |
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| T |
18198953 |
tcaaagatatttactcaacaaagttatctaattctgaaagatagcacctttgcagaatatgtactagactatgatctacttcagaaacattttggaatct |
18198854 |
T |
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| Q |
312 |
aatcaatatttctcgcttaatataccatttacacagacacaacattgacactgcacgcatgtgtca |
377 |
Q |
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| T |
18198853 |
aatcaatatttctcgcttaatataccattta---agacacaacattgacactgcacgcatgtgtca |
18198791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 369 - 651
Target Start/End: Complemental strand, 18198776 - 18198494
Alignment:
| Q |
369 |
catgtgtcaattgtcaaacacggaacacgccttcaaaccaaggtgtcaatgtgacctattccaaatcaaatcatctcatggaacaaaagtgacctggata |
468 |
Q |
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| T |
18198776 |
catgtgtcaattgtcaaacaccgagcacgccttcaaaccaaggtgtcaatgtgacctattccaaatcaaatcatctcatggaacaaaagtgaccttgata |
18198677 |
T |
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| Q |
469 |
aagctgcagggttagaagcaaaacccttggaaagtcgtccatctctcgaatgtttccctaaagtttgtttatttggttcatcaaactgtgttgagataga |
568 |
Q |
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| T |
18198676 |
aagctgcagggttagaagcaaaacccttggaaagtcgtccatctctcgaatgtttccctaaagttagtttatttggttcatcaaactgtgttgagataga |
18198577 |
T |
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| Q |
569 |
ttgtacgctccaagatggtatcaaacaaccaccatagaatgctatatttggatagattggcacaggataacacattgcaggat |
651 |
Q |
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| T |
18198576 |
ttgcacgctccaagatggtatcaaacaaccaccacagaatgctatatttggatagattggcacaggataacacatagcaggat |
18198494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 18189204 - 18189085
Alignment:
| Q |
124 |
aaaacattagatttcagtccaaaactctttcatttcctttttctttttaccttgttatttatcctctctcatttacataatatgtgcatcaaagatattt |
223 |
Q |
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|||||||| ||||||||||||||| ||| | |||||||| ||| || | ||||||||||||||| ||||||||||||||||||| || ||||||||||| |
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| T |
18189204 |
aaaacattggatttcagtccaaaaatct--cctttcctttgtctattcatcttgttatttatcctgtctcatttacataatatgtacaacaaagatattt |
18189107 |
T |
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| Q |
224 |
actcaacaaagttatctaattc |
245 |
Q |
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|||||||||||| |||| |||| |
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| T |
18189106 |
actcaacaaagtcatctgattc |
18189085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 646
Target Start/End: Complemental strand, 18188618 - 18188479
Alignment:
| Q |
507 |
ccatctctcgaatgtttccctaaagtttgtttatttggttcatcaaactgtgttgagatagattgtacgctccaagatggtatcaaacaaccaccataga |
606 |
Q |
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|||||||| ||||||||||||||||| ||||| |||| || | | || |||| |||| |||||||||||| ||||| | ||||||||||||||| |
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| T |
18188618 |
ccatctcttgaatgtttccctaaagtaggtttacttggaacacaagattgagttgtaataggttgtacgctccatgatgggactaaacaaccaccatagt |
18188519 |
T |
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| Q |
607 |
atgctatatttggatagattggcacaggataacacattgc |
646 |
Q |
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| T |
18188518 |
atgctatattgggttggaatgacacaggataacacattgc |
18188479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 646
Target Start/End: Complemental strand, 18193858 - 18193720
Alignment:
| Q |
508 |
catctctcgaatgtttccctaaagtttgtttatttggttcatcaaactgtgttgagatagattgtacgctccaagatggtatcaaacaaccaccatagaa |
607 |
Q |
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||||||| ||||||||||||||||| ||||| |||| || | | || |||| ||||| |||||||||||| ||||| | ||||||||||||||| | |
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| T |
18193858 |
catctcttgaatgtttccctaaagtaggtttacttggaacacgagattgagttgtgataggttgtacgctccatgatgggactaaacaaccaccatagta |
18193759 |
T |
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| Q |
608 |
tgctatatttggatagattggcacaggataacacattgc |
646 |
Q |
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| T |
18193758 |
agctatattgggttggaatgacacaggataacacattgc |
18193720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 18231765 - 18231703
Alignment:
| Q |
172 |
accttgttatttatcctctctcatttacataatatgtgcatcaaagatatttactcaacaaag |
234 |
Q |
| |
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||||||||||||||||| |||||| || | |||||| ||||||||||||||||||||||||| |
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| T |
18231765 |
accttgttatttatcctatctcatataaaaaatatgcacatcaaagatatttactcaacaaag |
18231703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 566 - 649
Target Start/End: Complemental strand, 18231187 - 18231104
Alignment:
| Q |
566 |
agattgtacgctccaagatggtatcaaacaaccaccatagaatgctatatttggatagattggcacaggataacacattgcagg |
649 |
Q |
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| T |
18231187 |
agattgtacattccatgatggtaccaaacaaccaccatagtatgctatatcgggacagaatgacatagggtaacacattgcagg |
18231104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 18194369 - 18194319
Alignment:
| Q |
190 |
tctcatttacataatatgtgcatcaaagatatttactcaacaaagttatct |
240 |
Q |
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||||||||||| ||||||| || |||||||||||||| |||||||| |||| |
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| T |
18194369 |
tctcatttacagaatatgtacaacaaagatatttactaaacaaagtcatct |
18194319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 18194121 - 18194068
Alignment:
| Q |
425 |
tattccaaatcaaatcatctcatggaacaaaagtgacctggataaagctgcagg |
478 |
Q |
| |
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|||||| ||||||||| ||||||| |||| ||| ||||| |||||||||||||| |
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| T |
18194121 |
tattcccaatcaaatcctctcatgaaacacaagagaccttgataaagctgcagg |
18194068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 483
Target Start/End: Complemental strand, 18231516 - 18231459
Alignment:
| Q |
426 |
attccaaatcaaatcatctcatggaacaaaagtgacctggataaagctgcagggttag |
483 |
Q |
| |
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| T |
18231516 |
attcccaatcaaatcctctcatggaacacaagagaccttgataaagctacaggattag |
18231459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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