View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18037_low_11 (Length: 376)

Name: NF18037_low_11
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18037_low_11
NF18037_low_11
[»] chr1 (2 HSPs)
chr1 (16-370)||(42392417-42392771)
chr1 (296-328)||(13709204-13709236)
[»] chr8 (3 HSPs)
chr8 (296-328)||(8917545-8917577)
chr8 (296-328)||(8917249-8917281)
chr8 (296-328)||(32691761-32691793)
[»] chr6 (1 HSPs)
chr6 (296-328)||(10335385-10335417)
[»] chr7 (1 HSPs)
chr7 (296-328)||(10893878-10893910)
[»] chr5 (1 HSPs)
chr5 (296-328)||(7512217-7512249)
[»] chr4 (2 HSPs)
chr4 (296-328)||(683070-683102)
chr4 (296-328)||(9988708-9988740)
[»] chr3 (1 HSPs)
chr3 (296-328)||(1502592-1502624)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 42392771 - 42392417
Alignment:
Q  16 actgaaaacagaagagcacgattacaaatttagctacgcacatttagtccaatattttggctcattagatgcattttttaattcaaataactaagcctcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42392771 actgaaaacagaagagcacgattacaaatttagctacgcacatttagtccaatattttggctcattagatgcattttttaattcaaataactaagcctcc 42392672  T
Q  116 ctacttttcaagctaaacaagttcgattatgttgttatttctgtttcatataaaaacattaagttctgatacaatccgaatattattaaacaattatgaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42392671 ctacttttcaagctaaacaagttcgattatgttgttatttctgtttcatataaaaacattaagttctgatacaatccgaatattattaaacaattatgaa 42392572  T
Q  216 gagtttaaaacaactttacactttacaaaatgatttagaagctatgaagcacacgtagacaccatacacgacattgacacagaaaatgacataattgaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42392571 gagtttaaaacaactttacactttacaaaatgatttagaagctatgaagcacacgtagacaccatacacgacattgacacagaaaataacataattgaat 42392472  T
Q  316 gtaatcagatgtgacgaatgttgtgactgagtcgaacaccggacaggcctttgtt 370  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  42392471 gtaatcagatgtgacaaatgttgtgactgagtcgaacaccggacacgcctttgtt 42392417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 13709204 - 13709236
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    ||||||||||| |||||||||||||||||||||    
T  13709204 agaaaatgacaaaattgaatgtaatcagatgtg 13709236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 8917577 - 8917545
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    |||||||||||||||||||||||||||||||||    
T  8917577 agaaaatgacataattgaatgtaatcagatgtg 8917545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 8917281 - 8917249
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    ||||||| |||||||||||||||||||||||||    
T  8917281 agaaaataacataattgaatgtaatcagatgtg 8917249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 32691761 - 32691793
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    ||||||||||||||||||||||||||| |||||    
T  32691761 agaaaatgacataattgaatgtaatcacatgtg 32691793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 10335417 - 10335385
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    |||||||||||||||||||||||||||||||||    
T  10335417 agaaaatgacataattgaatgtaatcagatgtg 10335385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 10893910 - 10893878
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    ||||||||||||||||||||||||||| |||||    
T  10893910 agaaaatgacataattgaatgtaatcacatgtg 10893878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 7512217 - 7512249
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    |||||||||||| ||||||||||||||||||||    
T  7512217 agaaaatgacattattgaatgtaatcagatgtg 7512249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 683070 - 683102
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    ||||||||||||||||||||||||||| |||||    
T  683070 agaaaatgacataattgaatgtaatcacatgtg 683102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 9988740 - 9988708
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    ||||||||||||||||||||||||||| |||||    
T  9988740 agaaaatgacataattgaatgtaatcacatgtg 9988708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 1502592 - 1502624
Alignment:
Q  296 agaaaatgacataattgaatgtaatcagatgtg 328  Q
    ||||||||||||||||||||||||||| |||||    
T  1502592 agaaaatgacataattgaatgtaatcacatgtg 1502624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University