View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18037_low_12 (Length: 338)

Name: NF18037_low_12
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18037_low_12
NF18037_low_12
[»] chr2 (4 HSPs)
chr2 (189-321)||(15504668-15504802)
chr2 (1-89)||(15504886-15504974)
chr2 (1-58)||(37400776-37400833)
chr2 (1-58)||(740528-740589)
[»] chr4 (1 HSPs)
chr4 (155-269)||(31500331-31500447)
[»] chr3 (2 HSPs)
chr3 (168-270)||(23629069-23629173)
chr3 (204-266)||(29372737-29372801)
[»] chr8 (1 HSPs)
chr8 (231-269)||(7621731-7621769)
[»] chr5 (5 HSPs)
chr5 (3-55)||(734272-734324)
chr5 (5-44)||(3945100-3945139)
chr5 (1-56)||(5856358-5856417)
chr5 (2-58)||(11488775-11488831)
chr5 (5-41)||(17555135-17555171)
[»] chr6 (1 HSPs)
chr6 (1-39)||(32938947-32938985)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 189 - 321
Target Start/End: Complemental strand, 15504802 - 15504668
Alignment:
Q  189 ttataattatgttagaaaatttatagcattatttcttcaaaag--aagacatcttaacatttaaaaaatatagcttctctccacatcactgcgaggaaat 286  Q
    |||||||||||| ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15504802 ttataattatgtcagaaaatttatagcattatttcttcaaaagtgaagacaccttaacatttaaaaaatatagcttctctccacatcactgcgaggaaat 15504703  T
Q  287 ctgctataaacatattcatgtgtctaactagaaac 321  Q
    |||||||||||||||||||||||||||||||||||    
T  15504702 ctgctataaacatattcatgtgtctaactagaaac 15504668  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15504974 - 15504886
Alignment:
Q  1 ttttatattgtcacaaactatacttatatatttcaatgatacaatataacaaatatttatcaactgagttaagctcatgacaacattta 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15504974 ttttatattgtcacaaactatacttatatatttcaatgatacaatataacaaatatttatcaactgagttaagctcatggcaacattta 15504886  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37400833 - 37400776
Alignment:
Q  1 ttttatattgtcacaaactatacttatatatttcaatgatacaatataacaaatattt 58  Q
    ||||||||||| |||| ||||| |||| | |||||||||||||||||||||| |||||    
T  37400833 ttttatattgtaacaatctatatttatctttttcaatgatacaatataacaattattt 37400776  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 740528 - 740589
Alignment:
Q  1 ttttatattgtcacaaactatacttatatatttcaatgat----acaatataacaaatattt 58  Q
    ||||||||||| ||||||||||||||| | ||||||||||    ||||||||||||||||||    
T  740528 ttttatattgtaacaaactatacttatctttttcaatgataccaacaatataacaaatattt 740589  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 31500447 - 31500331
Alignment:
Q  155 gagtacatatataatcgtttaaatgatgacaatgttataattatgttagaaaatttatagcattatttcttcaaaa--gaagacatcttaacatttaaaa 252  Q
    |||||||||||||||| ||||||||||||||   ||||||||| |  | ||| ||| |||||||||||||||||||  ||||||| | ||||| ||||||    
T  31500447 gagtacatatataatcttttaaatgatgacaccattataattaagccaaaaattttttagcattatttcttcaaaattgaagacaccgtaacaattaaaa 31500348  T
Q  253 aatatagcttctctcca 269  Q
    |||||||||||||||||    
T  31500347 aatatagcttctctcca 31500331  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 23629069 - 23629173
Alignment:
Q  168 atcgtttaaatgatgacaatgttataattatgttagaaaatttatagcattatttcttcaaaa--gaagacatcttaacatttaaaaaatatagcttctc 265  Q
    |||||||||| || ||||  |||||||||| |  | |||||| ||| ||||||||||||||||  ||||||| |||| ||||||||||||||| ||||||    
T  23629069 atcgtttaaacgacgacaccgttataattaagccaaaaaattaataacattatttcttcaaaattgaagacaccttatcatttaaaaaatataacttctc 23629168  T
Q  266 tccac 270  Q
    |||||    
T  23629169 tccac 23629173  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 29372737 - 29372801
Alignment:
Q  204 aaaatttatagcattatttcttcaaaa--gaagacatcttaacatttaaaaaatatagcttctct 266  Q
    |||||||||||||||||||||| ||||  ||||| | ||||||||||||||||||||||||||||    
T  29372737 aaaatttatagcattatttcttaaaaattgaagataccttaacatttaaaaaatatagcttctct 29372801  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 7621769 - 7621731
Alignment:
Q  231 gaagacatcttaacatttaaaaaatatagcttctctcca 269  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  7621769 gaagacaacttaacatttaaaaaatatagcttctctcca 7621731  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 734324 - 734272
Alignment:
Q  3 ttatattgtcacaaactatacttatatatttcaatgatacaatataacaaata 55  Q
    ||||||||| |||||||||| |||| | |||||||||||||| ||||||||||    
T  734324 ttatattgtaacaaactataattatctttttcaatgatacaacataacaaata 734272  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 3945100 - 3945139
Alignment:
Q  5 atattgtcacaaactatacttatatatttcaatgatacaa 44  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  3945100 atattgtaacaaactatacttatatttttcaatgatacaa 3945139  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5856358 - 5856417
Alignment:
Q  1 ttttatattgtcacaaactatacttatatatttcaatgat----acaatataacaaatat 56  Q
    ||||||||||| ||||||||||||||| | ||||||||||    ||||||||||||||||    
T  5856358 ttttatattgtaacaaactatacttatctgtttcaatgataccaacaatataacaaatat 5856417  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 11488775 - 11488831
Alignment:
Q  2 tttatattgtcacaaactatacttatatatttcaatgatacaatataacaaatattt 58  Q
    |||||||||| |||| |||||  ||| | |||||||||||||||||||||| |||||    
T  11488775 tttatattgtaacaatctatatgtatctttttcaatgatacaatataacaattattt 11488831  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 17555171 - 17555135
Alignment:
Q  5 atattgtcacaaactatacttatatatttcaatgata 41  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  17555171 atattgtaacaaattatacttatatatttcaatgata 17555135  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32938985 - 32938947
Alignment:
Q  1 ttttatattgtcacaaactatacttatatatttcaatga 39  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  32938985 ttttatattgtaacaaactatacttatatttttcaatga 32938947  T

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