View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_low_16 (Length: 280)
Name: NF18037_low_16
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 31910070 - 31909830
Alignment:
| Q |
20 |
tgcaagatgaattcaaagtaaagttcagtctcattttcagatacagtcttgcataattctagacaccacttgtggagtgccacactcctttgttcttttc |
119 |
Q |
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| T |
31910070 |
tgcaagatgaattcaaagtgaagttcagtctcattttcagatacagtcttgcataattctagacaccacttgtggagtgccacactcctttgttcttttc |
31909971 |
T |
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| Q |
120 |
ctctctttccatggtcatctagatgtccactctttgaacacatccattttttctttcaatctagactcgcccgcctgtttaatacttgatagaatgaaaa |
219 |
Q |
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| T |
31909970 |
ctctctttccatggtcatctagatgtccactctttgaacacatccattttttctttcaatctagact----cgcctgtttaatacttgatagaatgaaaa |
31909875 |
T |
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| Q |
220 |
cgtttcaaaaatggctaataattattaacaatgccacgacctaaa |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31909874 |
cgtttcaaaaatggctaataattattaacaatgccacgacctaaa |
31909830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 31901387 - 31901220
Alignment:
| Q |
79 |
tagacaccacttgtggagtgccacactcctttgttcttttcctctctttccatggtcatctagatgtccactctttgaacacatccattttttctttcaa |
178 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||| |
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| T |
31901387 |
tagacaccacttgtggagtgccacacttctttgttcttttcctctctttccatggtcttctagatgtccactccttgaacacatccattctttcttccaa |
31901288 |
T |
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| Q |
179 |
tctagactcgcccgcctgtttaatacttgatagaatgaaaacgtttcaaaaatggctaataattattaacaa |
250 |
Q |
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| T |
31901287 |
tctagact----cacctgcttaatacttgatagaatgaaaacatttcaaaaaaggctaataattattaacaa |
31901220 |
T |
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