View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18037_low_18 (Length: 266)
Name: NF18037_low_18
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 49744159 - 49743924
Alignment:
| Q |
14 |
cacagatatcaccaaacttcaaattattgtgagcacgaaatttactccaaccaccacttagtgtatattgattatttaaagtgagattcaaatcagcatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49744159 |
cacagatatcaccaaacttcaaattattgtgagcacgaaatttactccaaccaccacttagtgtatattgattatttaaagtgagattcaaatcagcatt |
49744060 |
T |
|
| Q |
114 |
ccatggtctgtcttgatcaacaaaaagagtaacatttcttccttccatcctgtgcagatgtttcttagcaaattcaattggtatgccctattttagatca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49744059 |
ccatggtctgtcttgatcaacaaaaagagtaatatttcttccttccatcctgtgcagatgtttcttagcaaattcaattggtatgccctattttagatca |
49743960 |
T |
|
| Q |
214 |
ttgtttatacattaaaatatcagcaatacaactcag |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
49743959 |
ttgtttatacattaaaatatcagcaatacaactcag |
49743924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 12867841 - 12867696
Alignment:
| Q |
19 |
atatcaccaaacttcaaattattgtgagcacgaaatttactccaaccaccacttagtgtatattgattatttaaagtgagattcaaatcagcattccatg |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||||| |
|
|
| T |
12867841 |
atatcaccaaatttcaaattattgtgagctcgaaatttactccaaccaccacttagtgtatattgattatttgaagtgatattaaaatcaacattccatg |
12867742 |
T |
|
| Q |
119 |
gtctgtcttgatcaacaaaaagagtaacatttcttccttccatcct |
164 |
Q |
| |
|
| ||| ||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
12867741 |
ttttgttttgatcaacaaaaagagtaacctttcttcctttcatcct |
12867696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 15135815 - 15135626
Alignment:
| Q |
21 |
atcaccaaacttcaaattattgtgagcacgaaatttactccaaccaccacttagtgtatattgattatttaaagtgagattcaaatcagcattccatggt |
120 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||||| |||||| | |||| ||||||| |||||||| ||||||| ||||||||| | |
|
|
| T |
15135815 |
atcaccaaatttcaaattattgtgagcacagaattcactccaaccacttgttagtgcaaattgtttatttagagtgagatccaaatcaacattccatgtt |
15135716 |
T |
|
| Q |
121 |
ctgtcttgatcaacaaaaagagtaacatttcttccttccatcctgtgcagatgtttcttagcaaattcaattggtatgccctattttaga |
210 |
Q |
| |
|
|| ||||||||||||||||| || |||||| | |||||||| |||||| |||| |||| |||||||| ||||||| ||| ||||||| |
|
|
| T |
15135715 |
ctatcttgatcaacaaaaaggatagcatttccttcttccatcatgtgcatatgtgtcttcacaaattcagttggtatcacctgttttaga |
15135626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University