View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_low_21 (Length: 255)
Name: NF18037_low_21
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_low_21 |
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| [»] chr4 (7 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 38248455 - 38248212
Alignment:
| Q |
8 |
gtagattatactcagcatttagttagtcaattaatcagtgattgttgcgatgattgcctgaattaatgtagagtttcacgactgcagggaatccatgttc |
107 |
Q |
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| T |
38248455 |
gtagaatatactcagcatttagttagtcaattaatcagtgattgttgcgatgattgcctgaat----gtagagtttcacgactgcagggaatccatgctc |
38248360 |
T |
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| Q |
108 |
attgtttgnnnnnnncaatcttagtttaactcttaaaacatatataacactagtccagtagtttgttaggtatattgcgagcaacgtagatttctttgtt |
207 |
Q |
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| T |
38248359 |
attgtttgtttttctcaatcttagtttaactcttaaaacatatataacactagtccagtagtttgttaggtatattgcgagcaacgtagatttctttgtt |
38248260 |
T |
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| Q |
208 |
tcaggttgagtatcagttgaatcttgcagcacagatcaataggaggga |
255 |
Q |
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| T |
38248259 |
tcaggttgagtatcagttgaatcttgcagcacagatcaataggaggga |
38248212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 255
Target Start/End: Complemental strand, 38253533 - 38253365
Alignment:
| Q |
88 |
actgcagggaatccatgttcattgtttgnnnnnnncaatcttagtttaactcttaaaacatatataacactagtccagtagtttgttaggtatattgcga |
187 |
Q |
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| T |
38253533 |
actgcagggaatccatatttgttgtttgtttatctcaatcttagtttaactcttaaaacatatataacactagtccattaagttgttgggtataatgcga |
38253434 |
T |
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| Q |
188 |
gcaacgtagatttctttgtttcaggttgagtat-cagttgaatcttgcagcacagatcaataggaggga |
255 |
Q |
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| T |
38253433 |
gcaacatagatttctttgtttcaggttgagtatgaagttaaatcttgcagcatagatcaaaaggaggga |
38253365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 38243082 - 38243025
Alignment:
| Q |
186 |
gagcaacgtagatttctttgtttcaggttgagtatc-agttgaatcttgcagcacaga |
242 |
Q |
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| T |
38243082 |
gagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcacaga |
38243025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 38226603 - 38226511
Alignment:
| Q |
151 |
ataacactagtccagtagtttgttaggtatattgcgagcaacgtagatttctttgtttcaggttgagtatca-gttgaatcttgcagcacaga |
242 |
Q |
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| T |
38226603 |
ataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacaga |
38226511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 38238117 - 38238037
Alignment:
| Q |
176 |
ggtatattgcgagcaacgtagatttctttgtttcaggttgagtatca-gttgaatcttgcagcacagatcaataggaggga |
255 |
Q |
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| T |
38238117 |
ggtatatagtgagcaacatggttttctttgtttcagaatgagtatcaagttgaatcttgcagcacagaccataaggaggga |
38238037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 38214218 - 38214129
Alignment:
| Q |
156 |
actagtccagtagtttgttaggtatattgcgagcaacgtagatttctttgtttcaggttgagtatc-agttgaatcttgcagcacagatca |
245 |
Q |
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| T |
38214218 |
actagtccattactttgttgggtgtttagtgagcaacatggattt-tttgtttcaggttgagtatcaagttgaatcttgtaccacagatca |
38214129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 38220217 - 38220172
Alignment:
| Q |
196 |
gatttctttgtttcaggttgagtatc-agttgaatcttgcagcaca |
240 |
Q |
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| T |
38220217 |
gatttctttgtttcaggttgagtatcaagttgaatcatgcaccaca |
38220172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 17454653 - 17454594
Alignment:
| Q |
197 |
atttctttgtttcaggttgagtatca-gttgaatcttgcagcacagatcaataggaggga |
255 |
Q |
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| T |
17454653 |
atttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatgaggaggga |
17454594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 17433585 - 17433532
Alignment:
| Q |
186 |
gagcaacgtagatttctttgtttcaggttgagtatc-agttgaatcttgcagca |
238 |
Q |
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| T |
17433585 |
gagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagca |
17433532 |
T |
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