View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_low_23 (Length: 240)
Name: NF18037_low_23
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 49164561 - 49164795
Alignment:
| Q |
12 |
tcatcacataccatattcaatttctcagaagagaat------accactaaatgcctgaatgtgaagcatggtcaagagcagaggaattcaactgctaaaa |
105 |
Q |
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| T |
49164561 |
tcattacataccatattcaatttctcagaagagattgattctaccactaaatgcctgaatgtgaagcatggtcaagagcagaggaattcaactgctaaaa |
49164660 |
T |
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| Q |
106 |
ttgttgaagctttaaacaaagcaaaaaactatgaatctaacaatccctttttcactgctatcatgacatattcttatgttaatcaatacatggtgagtct |
205 |
Q |
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| T |
49164661 |
ttgttgaagctttaaacaaagcaaaaaactatgaatctaacaatccctttttcactgctatcatgacatattcttatgttaatcaatacatggtgagtct |
49164760 |
T |
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| Q |
206 |
ttgaacagcctcaattttttatgttaagattgttt |
240 |
Q |
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| T |
49164761 |
ttgaacagcctcaattttttatgttaagattgttt |
49164795 |
T |
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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 46 - 227
Target Start/End: Original strand, 43751067 - 43751245
Alignment:
| Q |
46 |
ataccactaaatgcctgaatgtgaagcatggtcaagagcagaggaattcaactgctaaaattgttgaagctttaaacaaagcaaaaaactatgaatctaa |
145 |
Q |
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| T |
43751067 |
ataccactgaatgccttaatgtgaa---tgatcaagagccgaagaattcaacttcaaaaattgctgaagctttaaacaaagcaaaaaattacaaaactaa |
43751163 |
T |
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| Q |
146 |
caatccctttttcactgctatcatgacatattcttatgttaatcaatacatggtgagtctttgaacagcctcaattttttat |
227 |
Q |
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| T |
43751164 |
caatccctttttcactgttgtcatgacatattcctatgctaataaatacatggtgagtctttcaatagcttcatttttttat |
43751245 |
T |
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