View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18037_low_24 (Length: 225)

Name: NF18037_low_24
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18037_low_24
NF18037_low_24
[»] chr1 (2 HSPs)
chr1 (18-211)||(42476003-42476196)
chr1 (44-94)||(2654058-2654108)
[»] chr7 (1 HSPs)
chr7 (18-211)||(10062164-10062357)
[»] chr5 (1 HSPs)
chr5 (177-211)||(35014016-35014050)
[»] chr4 (1 HSPs)
chr4 (44-94)||(45637144-45637194)
[»] chr8 (1 HSPs)
chr8 (44-94)||(38738138-38738188)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 42476003 - 42476196
Alignment:
Q  18 tttttcgtcgacgtgtcattaatttggatgctcagttgtgcattggagggtgcggggagatggaaacatcttcacaccnnnnnnnncattgtctgttatt 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||        ||||||||||||||    
T  42476003 tttttcgtcgacgtgtcattaattttgatgctcagttgtgcattggagggtgcggggaggtggaaacatcttctcaccttttttttcattgtctgttatt 42476102  T
Q  118 tggatcagtttggaatcaaattctttgttggatgggtttctccgcagtattgccgtcaatcgctcaaagtcattattatcagttcagtcatatt 211  Q
    |||||||||||||||||| |||||| | ||||||||||| ||||| ||||||| |||  | |||||||||||||||||||||||||||||||||    
T  42476103 tggatcagtttggaatcacattcttaggtggatgggtttttccgcggtattgctgtcggttgctcaaagtcattattatcagttcagtcatatt 42476196  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 2654108 - 2654058
Alignment:
Q  44 gatgctcagttgtgcattggagggtgcggggagatggaaacatcttcacac 94  Q
    ||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  2654108 gatgctcagttgtgtgttggagggtgtggggaggtggaaacatcttcacac 2654058  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 10062357 - 10062164
Alignment:
Q  18 tttttcgtcgacgtgtcattaatttggatgctcagttgtgcattggagggtgcggggagatggaaacatcttcacaccnnnnnnnncattgtctgttatt 117  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||| || |        |||||| |||||||    
T  10062357 tttttcgtagacgtgtcattaattttgatgctcagttgtgcattggagggtgcggggaggcggaaacatcttctcatcttctttttcattgtttgttatt 10062258  T
Q  118 tggatcagtttggaatcaaattctttgttggatgggtttctccgcagtattgccgtcaatcgctcaaagtcattattatcagttcagtcatatt 211  Q
    || ||||||||||||||| ||||||   ||||||| ||| ||||| |||||| | |   ||||||||||||||||||||||||||| |||||||    
T  10062257 tgaatcagtttggaatcacattcttatgtggatggatttttccgcggtattgtcattggtcgctcaaagtcattattatcagttcaatcatatt 10062164  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 35014016 - 35014050
Alignment:
Q  177 tcgctcaaagtcattattatcagttcagtcatatt 211  Q
    |||||||||||||||||||||||||||||||||||    
T  35014016 tcgctcaaagtcattattatcagttcagtcatatt 35014050  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 45637144 - 45637194
Alignment:
Q  44 gatgctcagttgtgcattggagggtgcggggagatggaaacatcttcacac 94  Q
    ||||||||||||||  |||||||||| |||||| |||||||||||||||||    
T  45637144 gatgctcagttgtgtgttggagggtgtggggaggtggaaacatcttcacac 45637194  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 38738138 - 38738188
Alignment:
Q  44 gatgctcagttgtgcattggagggtgcggggagatggaaacatcttcacac 94  Q
    ||||||||||||||  |||| ||||| |||||| |||||||||||||||||    
T  38738138 gatgctcagttgtgtgttggcgggtgtggggaggtggaaacatcttcacac 38738188  T

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