View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_low_3 (Length: 538)
Name: NF18037_low_3
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_low_3 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 12160 - 12668
Alignment:
| Q |
18 |
taaaatgtatataacagtaacaaaatataatgaacagctcaacccaacacatccaagaaacaaagcaacaaaatcaaataggccttgtatttagattata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12160 |
taaaatgtatataacagtaacaaaatataatgaacagctcaacccaacacatccaagaaacaaagcaacaaaatcaaataggccttgtatttagattata |
12259 |
T |
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| Q |
118 |
tactatcacctgaaattttgcttatcttagcaccttgcatttcgcttatgttcacgtcgccaacaatgccagtttaacttttgaattttggagcaacacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12260 |
tactatcacctgaaattttgcttatcttagcaccttgcatttcgcttatgttcacgtcgccaacaatgccagtttaacttttgaattttggagcaacacc |
12359 |
T |
|
| Q |
218 |
cttaatgggaatctcaacactaaacacttcacaattagtccctaaaaacaaaacataataataagaatgaaagtgatgatcattgactatttatatagag |
317 |
Q |
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| T |
12360 |
cttaatgggaatctcaacactaaacacttcacaattagtccctaaaaacaaaacataataataagaatgaaagtgatgatcattgactatttatatagag |
12459 |
T |
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| Q |
318 |
atatcaaacaccccaatatcactaaatgacacttgaagtagtaactttccattatcacaaaatcattttgttgtgctaaccctttcattcannnnnnnct |
417 |
Q |
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| T |
12460 |
atatcaaacaccccaatatcactaaatgacacttgaagtagtaactttccattatcacaaaatcattttgttgtgctaaccctttcattcatttttttct |
12559 |
T |
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| Q |
418 |
tttcctgttcttttcaaaaaccatatgttgaaaatttgtgttatgaagtgagacatataaaagcataaatcagtgatcaagttcctttcatgattatttc |
517 |
Q |
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| T |
12560 |
tttcctgttcttttcaaaaaccatatgttgaaaatttgtgttatgaagtgagacatataaaagcataaatcagtgatcaagttcctttcatgattatttc |
12659 |
T |
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| Q |
518 |
ctgcatatt |
526 |
Q |
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| T |
12660 |
ctgcatatt |
12668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 107 - 340
Target Start/End: Original strand, 29322099 - 29322320
Alignment:
| Q |
107 |
tttagattatatactatcacctgaaattttgcttatcttagcaccttgcatttcgcttatgttcacgtcgccaacaatgccagtttaacttttgaatttt |
206 |
Q |
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|||| ||||||||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||| | |||||||||||| | ||||||||| ||||| |
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| T |
29322099 |
tttaaattatatactatcaccttaaattttgcatatcttagcatcttacatttcgcttatgttcaccttaccaacaatgccaatataacttttggatttt |
29322198 |
T |
|
| Q |
207 |
ggagcaacacccttaatgggaatctcaacactaaacacttcacaattagtccctaaaaacaaaacataataataagaatgaaagtgatgatcattgacta |
306 |
Q |
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|||| ||||| |||||| || ||| |||||||||||| ||||| |||| |||||||| || | |||||||||||||| ||||| ||||| |
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| T |
29322199 |
ggagtaacac------------tctcaatacaaaagacttcacaattaatccctgaaaataaaacatagtagtgagaatgaaagtgattatcatggacta |
29322286 |
T |
|
| Q |
307 |
tttatatagagatatcaaacaccccaatatcact |
340 |
Q |
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| T |
29322287 |
tttaaatagagatatcaaccactcgaatatcact |
29322320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 512
Target Start/End: Original strand, 29322641 - 29322704
Alignment:
| Q |
449 |
aaatttgtgttatgaagtgagacatataaaagcataaatcagtgatcaagttcctttcatgatt |
512 |
Q |
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| T |
29322641 |
aaatttgtgttatgaagcaagacatgtgaaagcataaatcagttaccaagttcctttcatgatt |
29322704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 23537046 - 23537134
Alignment:
| Q |
252 |
ttagtccctaaaaacaaaacataataataagaatgaaagtgatgatcattgactatttatatagagatatcaaacaccccaatatcact |
340 |
Q |
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| T |
23537046 |
ttagtctctgaaaataaaacataatagtaagaatgaaagcgatgatcatggactatttatatagagatatcaaccactccaatatcact |
23537134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 10644938 - 10645026
Alignment:
| Q |
252 |
ttagtccctaaaaacaaaacataataataagaatgaaagtgatgatcattgactatttatatagagatatcaaacaccccaatatcact |
340 |
Q |
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| T |
10644938 |
ttagtctctgaaaataaaacataatagtaagaatgaaagcgatgatcatgaactatttatatagagatattaaccacttcaatatcact |
10645026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 43468432 - 43468520
Alignment:
| Q |
252 |
ttagtccctaaaaacaaaacataataataagaatgaaagtgatgatcattgactatttatatagagatatcaaacaccccaatatcact |
340 |
Q |
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| T |
43468432 |
ttagtctctgaaaataaaacataatagtaagaatgaaagcaatgatcatgaactatttatatagagatattaaccactccaatatcact |
43468520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 46567813 - 46567725
Alignment:
| Q |
252 |
ttagtccctaaaaacaaaacataataataagaatgaaagtgatgatcattgactatttatatagagatatcaaacaccccaatatcact |
340 |
Q |
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|||||| || |||| ||||||||||| |||||||||||| |||||||| ||||||||||||||||||| || ||| |||||||||| |
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| T |
46567813 |
ttagtctctgaaaataaaacataatagtaagaatgaaagctatgatcatgaactatttatatagagatattaaccacttcaatatcact |
46567725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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