View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_low_4 (Length: 494)
Name: NF18037_low_4
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 68 - 482
Target Start/End: Complemental strand, 8375231 - 8374812
Alignment:
| Q |
68 |
cattaaattcctcaaccagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgt |
167 |
Q |
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| T |
8375231 |
cattaaattcctcaattagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgt |
8375132 |
T |
|
| Q |
168 |
cctcaatgaacataaattagctgctgctgagatttgtaaacaaaccatgtattg-----atgagaattgagagctgaaaaaatttgtgtatgaattgtag |
262 |
Q |
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| T |
8375131 |
cctcaaagaacataaattagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgtgtatgaattgtag |
8375032 |
T |
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| Q |
263 |
atgagagtttattgttttannnnnnngataaaagatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatgga |
362 |
Q |
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| T |
8375031 |
atgagagtttattgttttatttttttgataaaagatgagagtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatgga |
8374932 |
T |
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| Q |
363 |
tcaaaattagaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctctaattaataaatt |
462 |
Q |
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| T |
8374931 |
tcaaaattagaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctctaattaataaatt |
8374832 |
T |
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| Q |
463 |
tcaacaagtttggctgcctt |
482 |
Q |
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| T |
8374831 |
tcaacaagtttggctgcctt |
8374812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 68 - 274
Target Start/End: Original strand, 8439872 - 8440083
Alignment:
| Q |
68 |
cattaaattcctcaaccagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgt |
167 |
Q |
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| T |
8439872 |
cattaaattcctcaattagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgt |
8439971 |
T |
|
| Q |
168 |
cctcaatgaacataaattagctgctgctgagatttgtaaacaaacca-----tgtattgatgagaattgagagctgaaaaaatttgtgtatgaattgtag |
262 |
Q |
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| T |
8439972 |
cctcaaagaacataaattagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgtgtatgaattgtag |
8440071 |
T |
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| Q |
263 |
atgagagtttat |
274 |
Q |
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| T |
8440072 |
atgagagtttat |
8440083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 8417911 - 8418062
Alignment:
| Q |
68 |
cattaaattcctcaaccagttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgt |
167 |
Q |
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||||||||||||||| |||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
8417911 |
cattaaattcctcaattagttgtcttgtttttgataattgag--------aaattagacaaacttgggagttttggaagatggataacagcattaactgt |
8418002 |
T |
|
| Q |
168 |
cctcaatgaacataaattagctgctgctgagatttgtaaacaaaccatgtattgatgaga |
227 |
Q |
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| T |
8418003 |
cctcaaagaagataaattagctgctgctgagaattgtatactaaccatgtattgatgaga |
8418062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 295 - 462
Target Start/End: Original strand, 8440070 - 8440230
Alignment:
| Q |
295 |
agatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatga |
394 |
Q |
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| T |
8440070 |
agatgagagtttatgaaaacaatgaatgggagtgggtggtatatatatagatag-ggaagagaatggatcaaaactagaatagatgggaagaagtcacaa |
8440168 |
T |
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| Q |
395 |
gcaaccgtaacattagattagacttggcctttttattgac-tttctatgtattctctaattaataaatt |
462 |
Q |
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| T |
8440169 |
ctaaccgta-----agattagacttggcctttttattgacttttctatgtat--tctaattaataaatt |
8440230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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