View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_low_5 (Length: 450)
Name: NF18037_low_5
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 96 - 435
Target Start/End: Complemental strand, 31950671 - 31950333
Alignment:
| Q |
96 |
aactgattccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgttcaaattttttaaacatttatatctaaacat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31950671 |
aactgattccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgttcaaattttttaaacatttatatctaaacat |
31950572 |
T |
|
| Q |
196 |
gtgatttttcattggcaatatgatatattcctttaatatgcattttcttcttgattcttgcctactatttttgttgccttcatttttaatgatgtcactg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31950571 |
gtgatttttcattggcaatatgatatattcctttaatattcattttcttcttgatttttgcctactatttttgttgccttcatttttaatgatgtcactg |
31950472 |
T |
|
| Q |
296 |
cctacataatcttctatgaccaacttgtgcaatataatatcttctacatatttgtgatgatgttgattgtgatttatgtttgtcagaattttatgcctca |
395 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31950471 |
cctacataatcttccatgaccaacttgtgcaatataatatcttttacata-ttgtgatgatgttgattgtgatttatgtttgtcagaattttatgcctga |
31950373 |
T |
|
| Q |
396 |
agtttcacctgcgcattgatcatttatccataaaatagat |
435 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |
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| T |
31950372 |
agtttcacctgcgcactgatcatttatccataaaatagat |
31950333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 99 - 435
Target Start/End: Original strand, 31951927 - 31952260
Alignment:
| Q |
99 |
tgattccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgttcaaattttttaaacatttatatctaaacatgtg |
198 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |
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| T |
31951927 |
tgattccaattgaacgacactaagatctatgaagccttattttacccacatattgtgttaagctgttcaaatttgttaaacatttatgtctaaacctgtg |
31952026 |
T |
|
| Q |
199 |
atttttcattggcaatatgatatattcctttaatatgcattttcttcttgattcttgcctactatttttgttgccttcatttttaatgatgtcactgcct |
298 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| |
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| T |
31952027 |
ttttttcactggcaatatgatatatttttttaatatgcattttatccttgattcttgcctactatttttgttgcctttattattaatgttgtcactgcct |
31952126 |
T |
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| Q |
299 |
acataatcttctatgaccaacttgtgcaatataatatcttctacatatttgtgatgatgttgattgtgatttatgtttgtcagaattttatgcctcaagt |
398 |
Q |
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||| | |||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| | |||| |
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| T |
31952127 |
acaaattcttctatgaccaacttgtgtaatataatattttctacata-ttgtgatgatgctgattggaatttatgtttgtcagaattttatgcatgaagt |
31952225 |
T |
|
| Q |
399 |
ttcacctgcgcattgatcatttatccataaaatagat |
435 |
Q |
| |
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||||| | ||| ||||||||||||||||| |||||| |
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| T |
31952226 |
ttcac--gtgcactgatcatttatccataatatagat |
31952260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 96 - 298
Target Start/End: Complemental strand, 3498157 - 3497957
Alignment:
| Q |
96 |
aactgattccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgttcaaattttttaaacatttatatctaaacat |
195 |
Q |
| |
|
|||| ||| |||||||| | |||||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||| | |
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| T |
3498157 |
aactaattacaattgaatggcactaagatctgtgaagccttattttacc--catattgtgttaaactgttcaagttttttaaacatttatgtctaaacct |
3498060 |
T |
|
| Q |
196 |
gtgatttttcattggcaatatgatatattcctttaatatgcattttcttcttgattcttgcctactatttttgttgccttcatttttaatgatgtcactg |
295 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |||||| | |
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| T |
3498059 |
gtgttttttcactggcaatatgatatattcctttaatatgcattttctccttgattcttgcctactattactgttgccttcattattaatgctgtcacgg |
3497960 |
T |
|
| Q |
296 |
cct |
298 |
Q |
| |
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||| |
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|
| T |
3497959 |
cct |
3497957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 3497924 - 3497875
Alignment:
| Q |
384 |
ttttatgcctcaagtttcacctgcgcattgatcatttatccataaaatagat |
435 |
Q |
| |
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|||||||||| ||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
3497924 |
ttttatgcctgaagtttcac--gcgcactgatcatttatccagaaaatagat |
3497875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 22927431 - 22927492
Alignment:
| Q |
102 |
ttccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgttaagctgtt |
165 |
Q |
| |
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||||||||||| |||| |||||||| |||||| |||||||||| ||| ||||||||| ||||| |
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| T |
22927431 |
ttccaattgaatgacattaagatctatgaagccttattttacc--cattttgtgttaatctgtt |
22927492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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