View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18037_low_6 (Length: 447)
Name: NF18037_low_6
Description: NF18037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18037_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Original strand, 39688356 - 39688787
Alignment:
| Q |
9 |
agcacagacaaaaatcatgtttttgttcatcacggaagtgtatcttccacttactataactgtattacacaccccacataaaagtactgaaattgagcac |
108 |
Q |
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| T |
39688356 |
agcacagacaaaaatcatgtttttgttcatcacggaagtgtatcttccacttactataactgtattacacaccccacataaaagtactgaaattgagcac |
39688455 |
T |
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| Q |
109 |
tcaattcaacccaacccaccaacattgttagttg-------gcctctttttgatctgctatatacttgcaccgacacatccacatgttgtttcttgcatt |
201 |
Q |
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| T |
39688456 |
tcaattcaacctaacccaccaacattgttagttgctagttggcctctttttgatcttctatatacttgcaccgacacatccacatgttgtttcttacatt |
39688555 |
T |
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| Q |
202 |
gacatcactccgttgcttatggattagca---ggatttcccattcaaaataactaagttcataagtgcaagaagaatctagctacctagctgcaatctca |
298 |
Q |
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| T |
39688556 |
gacatcactccgttgcttatggattagcataaggatttcccattcaaaataactaagttcataagtgcaagaagaatctagctacctagctgcaatctca |
39688655 |
T |
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| Q |
299 |
taagaataagaaacatatgctgctcaaatgaacaaaattaacaaatttacgatcaacttcacaatgaaaaagtgttaagatttacataacttgtgaatat |
398 |
Q |
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| T |
39688656 |
taagaataagaaacatatgctgctcaaatgaacaaaattaacaaatttacgatcaacttcacaatgaaaaagtgttaagatttacataacttgtgaatat |
39688755 |
T |
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| Q |
399 |
gatgaagcttttttaggttgtattgtgttcta |
430 |
Q |
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| T |
39688756 |
gatgaagcttttttaggttgtattgtgttcta |
39688787 |
T |
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Back To:
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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 30903094 - 30903004
Alignment:
| Q |
225 |
ttagcaggatttcccattcaaaataactaagttcataagtgcaagaagaatctagctacctagctgcaatctcataagaataagaaacata |
315 |
Q |
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| T |
30903094 |
ttagcaggatctccaattcaaaataaccaagttaataactgctagatgaatcaaggtacctagctgcaatctcaggagaataagaaacata |
30903004 |
T |
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