View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18038_high_1 (Length: 699)

Name: NF18038_high_1
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18038_high_1
NF18038_high_1
[»] chr7 (5 HSPs)
chr7 (18-424)||(7655224-7655629)
chr7 (649-683)||(7655167-7655201)
chr7 (631-675)||(30969776-30969820)
chr7 (631-668)||(7754218-7754255)
chr7 (631-675)||(19267367-19267411)
[»] chr1 (1 HSPs)
chr1 (18-154)||(52103087-52103223)
[»] chr4 (2 HSPs)
chr4 (18-93)||(23339438-23339513)
chr4 (631-675)||(23499436-23499480)
[»] chr2 (1 HSPs)
chr2 (18-61)||(43585201-43585244)
[»] chr3 (1 HSPs)
chr3 (631-669)||(41417170-41417208)
[»] chr5 (1 HSPs)
chr5 (631-676)||(18345722-18345767)
[»] chr6 (1 HSPs)
chr6 (631-675)||(14536142-14536186)


Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 7655629 - 7655224
Alignment:
Q  18 acatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagctggtgttgcagggc 117  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7655629 acatgtccaccagatatgtttgctccaacagaaacggcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagcaggtgttgcagggc 7655530  T
Q  118 cattattggtaagtttacctgccaaaataaccaacaatcattcattttactagcatcataataatgcatcaaaatggatgnnnnnnnnn--ctcttgaac 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||           |||||||||    
T  7655529 cattattggtaagtttgcctgccaaaataaccaacaatcattcattttactagcatcataat---gcatcaaaatggatgaaaaaaaaaaactcttgaac 7655433  T
Q  216 catatagttttcaaaactttagcataaaagttacggagtacgttaggcgcgaactcaatggtaaaattttgaccttgtaaccttaaggaaaggagttcaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655432 catatagttttcaaaactttagcataaaagttacggagtacgttaggcgcgaactcaatggtaaaattttgaccttgtaaccttaaggaaaggagttcaa 7655333  T
Q  316 atatccttaaaggtgtttatataataatcatttagtgtcattataattaataataaaatctccattctccaattttattttttacaaaaagaaaaacaga 415  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655332 atatccttaaaggtgtttttataataatcatttagtgtcattataattaataataaaatctccattctccaattttattttttacaaaaagaaaaacaga 7655233  T
Q  416 agacgcaaa 424  Q
    |||||||||    
T  7655232 agacgcaaa 7655224  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 7655201 - 7655167
Alignment:
Q  649 ttgtaacaaactcgtgatttgtcatgacttgccta 683  Q
    |||||||||||||||||||||||||||||||||||    
T  7655201 ttgtaacaaactcgtgatttgtcatgacttgccta 7655167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 631 - 675
Target Start/End: Original strand, 30969776 - 30969820
Alignment:
Q  631 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 675  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||    
T  30969776 gaaaatcaagggttgttattgtaacaaactcatgatttgttatga 30969820  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 631 - 668
Target Start/End: Complemental strand, 7754255 - 7754218
Alignment:
Q  631 gaaaataaagggttgttattgtaacaaactcgtgattt 668  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  7754255 gaaaatcaagggttgttattgtaacacactcgtgattt 7754218  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 631 - 675
Target Start/End: Complemental strand, 19267411 - 19267367
Alignment:
Q  631 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 675  Q
    |||||| ||||||||||||| |||||||||| |||||||| ||||    
T  19267411 gaaaatcaagggttgttattttaacaaactcatgatttgttatga 19267367  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 52103087 - 52103223
Alignment:
Q  18 acatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagctggtgttgcagggc 117  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||  |||||||||||||||| ||||||| ||||||| ||  | || || ||||  |    
T  52103087 acatgtccaccagaaatgtttgcaccaacagaaacagccacaaataacccaaatgcatgagataatgatgcaactatgagaccttcaggagtggcagctc 52103186  T
Q  118 cattattggtaagtttacctgccaaaataaccaacaa 154  Q
    |||| || ||||||||| |||||| |||| |||||||    
T  52103187 cattgtttgtaagtttatctgccacaatagccaacaa 52103223  T

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Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 23339513 - 23339438
Alignment:
Q  18 acatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagcta 93  Q
    |||||||||||||| ||||| || |||||||| ||||||||||| ||| |||||||||| ||||||||||||||||    
T  23339513 acatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaatgcatgtgatagtgatgcagcta 23339438  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 631 - 675
Target Start/End: Complemental strand, 23499480 - 23499436
Alignment:
Q  631 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 675  Q
    |||||| ||||||||||||| |||||||||| |||||||| ||||    
T  23499480 gaaaattaagggttgttattttaacaaactcatgatttgttatga 23499436  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 43585244 - 43585201
Alignment:
Q  18 acatgtccaccagagatgtttgctccaacagaaacagcaacaaa 61  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  43585244 acatgtccaccagatatgttggctccaacagaaacagcaacaaa 43585201  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 631 - 669
Target Start/End: Original strand, 41417170 - 41417208
Alignment:
Q  631 gaaaataaagggttgttattgtaacaaactcgtgatttg 669  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  41417170 gaaaatcaagggttgttattgtaacaaactcgtgatttg 41417208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 631 - 676
Target Start/End: Original strand, 18345722 - 18345767
Alignment:
Q  631 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatgac 676  Q
    |||||| |||||||||||||| ||||||||| |||||||| |||||    
T  18345722 gaaaatcaagggttgttattgcaacaaactcatgatttgttatgac 18345767  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 631 - 675
Target Start/End: Original strand, 14536142 - 14536186
Alignment:
Q  631 gaaaataaagggttgttattgtaacaaactcgtgatttgtcatga 675  Q
    |||||| || ||||||||||| |||||||||||||||||| ||||    
T  14536142 gaaaatcaaaggttgttattgcaacaaactcgtgatttgttatga 14536186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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