View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18038_high_12 (Length: 278)
Name: NF18038_high_12
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18038_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 53174820 - 53174554
Alignment:
| Q |
1 |
ctacataaccctctttatgtgtcatagaaagtatgttttggtatcaaaacatgaaatgnnnnnnngggttgttaatagtatatgaaaatcttgttatatt |
100 |
Q |
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| T |
53174820 |
ctacataaacctctttatttgtcatagaaatgatgttttggtatcaaaacatgaaatgaaaaaaagggttgttaatagtatatgaaaatcttgttatatt |
53174721 |
T |
|
| Q |
101 |
gtagatgaaaagttggctcctttagattggaaaacaagacataaaatagttgttgggacagcgcgtggacttcactacttgcacaaaggttgcaagagga |
200 |
Q |
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| T |
53174720 |
gtagatgaacagttggctcctttagattggaaaacaagacataaaatagttgttgggacagcgcgtggacttcactacttgcacaaaggttgcaagagga |
53174621 |
T |
|
| Q |
201 |
gaataatccatagagatatcaaggcatcaaacattttattgacaaaagattttgaaccacaggttct |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53174620 |
gaataatccatagagatatcaaggcatcaaacattttattgacaaaagattttgaaccacaggttct |
53174554 |
T |
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