View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18038_high_15 (Length: 254)

Name: NF18038_high_15
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18038_high_15
NF18038_high_15
[»] chr3 (10 HSPs)
chr3 (24-217)||(8195204-8195399)
chr3 (185-238)||(29676271-29676324)
chr3 (189-238)||(54008503-54008552)
chr3 (185-237)||(25823622-25823674)
chr3 (192-236)||(47931756-47931800)
chr3 (185-232)||(1927523-1927570)
chr3 (185-236)||(7680141-7680192)
chr3 (194-232)||(16607385-16607423)
chr3 (24-76)||(22159183-22159236)
chr3 (189-237)||(10344389-10344437)
[»] chr7 (5 HSPs)
chr7 (185-239)||(11909286-11909340)
chr7 (185-232)||(5639579-5639626)
chr7 (185-224)||(11909348-11909387)
chr7 (192-236)||(1729426-1729470)
chr7 (24-60)||(18564777-18564813)
[»] chr2 (6 HSPs)
chr2 (185-238)||(33052164-33052217)
chr2 (189-237)||(921882-921930)
chr2 (185-236)||(18967246-18967297)
chr2 (185-232)||(44949413-44949460)
chr2 (24-58)||(44923881-44923915)
chr2 (185-238)||(5773800-5773853)
[»] chr1 (6 HSPs)
chr1 (185-238)||(45749018-45749071)
chr1 (185-236)||(7230126-7230177)
chr1 (185-238)||(38149429-38149482)
chr1 (185-224)||(45749075-45749114)
chr1 (185-238)||(34662470-34662523)
chr1 (189-237)||(47991803-47991851)
[»] chr6 (7 HSPs)
chr6 (185-232)||(29938421-29938468)
chr6 (192-236)||(22495499-22495543)
chr6 (185-236)||(29318070-29318121)
chr6 (185-236)||(31759391-31759442)
chr6 (194-232)||(14897118-14897156)
chr6 (194-238)||(1858342-1858386)
chr6 (194-238)||(33169247-33169291)
[»] scaffold0280 (1 HSPs)
scaffold0280 (185-236)||(13946-13997)
[»] chr8 (5 HSPs)
chr8 (185-232)||(9331311-9331358)
chr8 (24-58)||(29781143-29781177)
chr8 (185-238)||(36308536-36308589)
chr8 (185-222)||(36827034-36827071)
chr8 (26-58)||(510296-510328)
[»] chr5 (8 HSPs)
chr5 (185-232)||(3709455-3709502)
chr5 (185-232)||(5089524-5089571)
chr5 (185-224)||(22625756-22625795)
chr5 (185-236)||(34820647-34820698)
chr5 (185-235)||(2992649-2992699)
chr5 (185-238)||(15966708-15966761)
chr5 (192-237)||(33545840-33545885)
chr5 (24-73)||(19832293-19832344)
[»] chr4 (5 HSPs)
chr4 (185-228)||(8560505-8560548)
chr4 (185-232)||(9802986-9803033)
chr4 (185-232)||(34100170-34100217)
chr4 (24-58)||(35579453-35579487)
chr4 (192-236)||(16391703-16391747)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 8195399 - 8195204
Alignment:
Q  24 ggctacaccaaaaaatagta---ttgcttttattaatattaataggtatagatatagattgacttagtttgagnnnnnnnnnnnnnnnnnnnncaaataa 120  Q
    |||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||                    | |||||    
T  8195399 ggctacacaaaaaaatagtactattgcttttattaatattaataggtatagatatagattgacttagtttgagtttttttttcttttctttt-cgaataa 8195301  T
Q  121 cctaataattagaaatccaatttaaatgagtgttaagtggggtgtctaacaagtactcattcggaaaattgattttttaagtttattcatttaacga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  8195300 cctaataattagaaatccaatttaaatgagtgttaagtggggtgtctaacaagtactccttcgaaaaattgattttttaagttcattcatttaacga 8195204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 29676324 - 29676271
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||    
T  29676324 aaaattgattttttaagttcatttatttaatgatgtatgtagtccatattataa 29676271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 54008552 - 54008503
Alignment:
Q  189 ttgattttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    ||||||||||||||| |||||||||| ||||||||| || ||||||||||    
T  54008552 ttgattttttaagttcattcatttaatgatgtatgtggttcataatataa 54008503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 25823622 - 25823674
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatata 237  Q
    |||||| | |||||||||||||||||||||||||||||||  | |||||||||    
T  25823622 aaaattcactttttaagtttattcatttaacgatgtatgtgattcataatata 25823674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 47931800 - 47931756
Alignment:
Q  192 attttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    |||||||| ||||||||| |||| |||||||||||||||||||||    
T  47931800 attttttaggtttattcaattaatgatgtatgtagtccataatat 47931756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 1927523 - 1927570
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    |||||| |||||||||||| |||||||||| ||||||||| |||||||    
T  1927523 aaaatttattttttaagttcattcatttaatgatgtatgtggtccata 1927570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 7680141 - 7680192
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    ||||||||||||||||||||||| || ||| ||||||||| || ||||||||    
T  7680141 aaaattgattttttaagtttatttatataatgatgtatgtggttcataatat 7680192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 16607385 - 16607423
Alignment:
Q  194 tttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  16607385 tttttaagtttattcatttaatgatgtatgtggtccata 16607423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 22159183 - 22159236
Alignment:
Q  24 ggctacaccaaaaaata-gtattgcttttattaatattaataggtatagatata 76  Q
    |||||||||||| || | || |||| ||||||||||||||||||||||||||||    
T  22159183 ggctacaccaaacaaaatgttttgcctttattaatattaataggtatagatata 22159236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 10344437 - 10344389
Alignment:
Q  189 ttgattttttaagtttattcatttaacgatgtatgtagtccataatata 237  Q
    ||||||||||||||| ||||| |||| ||||||||| || |||||||||    
T  10344437 ttgattttttaagttcattcaattaatgatgtatgtggttcataatata 10344389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 11909286 - 11909340
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatataat 239  Q
    |||||||| |||||||||| |||||||||||||||||||| || |||||||||||    
T  11909286 aaaattgactttttaagttcattcatttaacgatgtatgtggttcataatataat 11909340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 5639579 - 5639626
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    ||||||||||||||| ||| |||||||||| ||||||||| |||||||    
T  5639579 aaaattgattttttatgttcattcatttaatgatgtatgttgtccata 5639626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 11909387 - 11909348
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgt 224  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  11909387 aaaattgattttttaggttcattcatttaacgatgtatgt 11909348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 1729426 - 1729470
Alignment:
Q  192 attttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    |||||||||||||||||| |||| |||||||||||  ||||||||    
T  1729426 attttttaagtttattcaattaatgatgtatgtagatcataatat 1729470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 18564813 - 18564777
Alignment:
Q  24 ggctacaccaaaaaatagtattgcttttattaatatt 60  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  18564813 ggctacaccaaaaaaaagtattgcctttattaatatt 18564777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 33052164 - 33052217
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||    
T  33052164 aaaattgattttttaggtttatttatttaacgatgtatgtggtccatattataa 33052217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 921930 - 921882
Alignment:
Q  189 ttgattttttaagtttattcatttaacgatgtatgtagtccataatata 237  Q
    ||||||||||||||| ||||| |||| ||||||| ||||||||||||||    
T  921930 ttgattttttaagttcattcaattaatgatgtatctagtccataatata 921882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 18967246 - 18967297
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    |||||||||||||||  ||||||||||||| ||||||||| || ||||||||    
T  18967246 aaaattgattttttagatttattcatttaatgatgtatgtggttcataatat 18967297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 44949460 - 44949413
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    |||||| |||||||||||| |||||||||| ||||||||| |||||||    
T  44949460 aaaatttattttttaagttcattcatttaatgatgtatgtggtccata 44949413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 44923881 - 44923915
Alignment:
Q  24 ggctacaccaaaaaatagtattgcttttattaata 58  Q
    |||||||||||||||||||||||| ||||||||||    
T  44923881 ggctacaccaaaaaatagtattgcctttattaata 44923915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 5773800 - 5773853
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    |||||||| |||||| |||||||||||||| ||||||||  ||||||| |||||    
T  5773800 aaaattgactttttaggtttattcatttaatgatgtatgcggtccatattataa 5773853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 45749018 - 45749071
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    ||||||||||||||| ||| |||||||||||||||||||| || ||||||||||    
T  45749018 aaaattgattttttaggttcattcatttaacgatgtatgtggttcataatataa 45749071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 7230177 - 7230126
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    ||||||||||||||||||| ||||| |||| ||||||||| |||||||||||    
T  7230177 aaaattgattttttaagttcattcaattaatgatgtatgtggtccataatat 7230126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 38149482 - 38149429
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    |||||| |||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  38149482 aaaattcattttttaagttcattcatttaatgatgtatgtggtccatattataa 38149429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 45749114 - 45749075
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgt 224  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  45749114 aaaattgactttttaagttcattcatttaacgatgtatgt 45749075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 34662523 - 34662470
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    |||||| | |||||| |||||||||||||| ||||||||| || ||||||||||    
T  34662523 aaaatttactttttaggtttattcatttaatgatgtatgtggttcataatataa 34662470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 47991803 - 47991851
Alignment:
Q  189 ttgattttttaagtttattcatttaacgatgtatgtagtccataatata 237  Q
    |||| |||||| ||| |||||||||| ||||||||| ||||||||||||    
T  47991803 ttgactttttaggttcattcatttaatgatgtatgtggtccataatata 47991851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 29938468 - 29938421
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    ||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  29938468 aaaattgattttttaggtttattcatttaatgatgtatgtagttcata 29938421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 22495499 - 22495543
Alignment:
Q  192 attttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||    
T  22495499 attttttaggtttattcatttaatgatgtatgtggtccataatat 22495543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 29318070 - 29318121
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    ||||||| ||||||| ||| |||||||||| ||||||||| |||||||||||    
T  29318070 aaaattgtttttttaggttcattcatttaatgatgtatgtggtccataatat 29318121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 31759442 - 31759391
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    |||||||| |||||||||| ||||| |||| ||||||||| |||||||||||    
T  31759442 aaaattgactttttaagttcattcaattaatgatgtatgtggtccataatat 31759391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 14897156 - 14897118
Alignment:
Q  194 tttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  14897156 tttttaagtttattcatttaatgatgtatgtggtccata 14897118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 1858386 - 1858342
Alignment:
Q  194 tttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    |||||||||||||||| |||| ||||||||| ||||||| |||||    
T  1858386 tttttaagtttattcaattaatgatgtatgtggtccatattataa 1858342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 33169291 - 33169247
Alignment:
Q  194 tttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    |||||||||||||||| |||| ||||||||| ||||||| |||||    
T  33169291 tttttaagtttattcaattaatgatgtatgtggtccatattataa 33169247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 13997 - 13946
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    ||||||||||||||| ||| |||||||||| |||| ||||||| ||||||||    
T  13997 aaaattgattttttaggttcattcatttaatgatgaatgtagttcataatat 13946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 9331311 - 9331358
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    ||||||||||||||| ||| |||||||||| ||||||||| |||||||    
T  9331311 aaaattgattttttaggttcattcatttaatgatgtatgttgtccata 9331358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 29781177 - 29781143
Alignment:
Q  24 ggctacaccaaaaaatagtattgcttttattaata 58  Q
    |||||||||||||||||||||||| ||||||||||    
T  29781177 ggctacaccaaaaaatagtattgcctttattaata 29781143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 36308536 - 36308589
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    |||||| | |||||||||||||||||| || ||||||||| ||||||| |||||    
T  36308536 aaaattcactttttaagtttattcattaaatgatgtatgtggtccatattataa 36308589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 36827071 - 36827034
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtat 222  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  36827071 aaaattgattttttaggtttattcatttaatgatgtat 36827034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 510296 - 510328
Alignment:
Q  26 ctacaccaaaaaatagtattgcttttattaata 58  Q
    |||||||||||||||||||||| ||||||||||    
T  510296 ctacaccaaaaaatagtattgcctttattaata 510328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 3709502 - 3709455
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    ||||||||||||||| ||| |||||||||| ||||||||| |||||||    
T  3709502 aaaattgattttttaggttcattcatttaatgatgtatgtggtccata 3709455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 5089571 - 5089524
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    |||||||||||||||  ||||||||||||| ||||||||| |||||||    
T  5089571 aaaattgattttttagatttattcatttaatgatgtatgtggtccata 5089524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 22625795 - 22625756
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgt 224  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  22625795 aaaattgattttttaagtttattcatttaataatgtatgt 22625756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 34820647 - 34820698
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    |||||| |||||||||||| |||||||||| ||||||||| ||| |||||||    
T  34820647 aaaattaattttttaagttcattcatttaatgatgtatgtggtctataatat 34820698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 2992699 - 2992649
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataata 235  Q
    ||||||| |||||||||||||||||||||| |||||| || || |||||||    
T  2992699 aaaattgtttttttaagtttattcatttaatgatgtacgtggttcataata 2992649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 15966761 - 15966708
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccataatataa 238  Q
    |||||||| |||||| ||| ||||| |||| ||||||||| |||||||||||||    
T  15966761 aaaattgactttttaggttcattcaattaatgatgtatgtggtccataatataa 15966708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 33545840 - 33545885
Alignment:
Q  192 attttttaagtttattcatttaacgatgtatgtagtccataatata 237  Q
    |||||||| ||| |||||||||| |||||||||||| |||||||||    
T  33545840 attttttaggttcattcatttaatgatgtatgtagttcataatata 33545885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 19832344 - 19832293
Alignment:
Q  24 ggctacaccaaaaaatagtattgcttttattaat--attaataggtatagat 73  Q
    ||||||||||||||| |||||||| |||||||||  |||||||| |||||||    
T  19832344 ggctacaccaaaaaaaagtattgcctttattaatagattaatagatatagat 19832293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 8560548 - 8560505
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtc 228  Q
    |||||||| |||||||||| |||||||||| |||||||||||||    
T  8560548 aaaattgactttttaagttcattcatttaatgatgtatgtagtc 8560505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 9803033 - 9802986
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    ||||||||||||||||||||||| | |||| |||||||||||| ||||    
T  9803033 aaaattgattttttaagtttatttaattaatgatgtatgtagttcata 9802986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 34100217 - 34100170
Alignment:
Q  185 aaaattgattttttaagtttattcatttaacgatgtatgtagtccata 232  Q
    |||||| | |||||||||| |||||||||| |||||||||||||||||    
T  34100217 aaaattaaatttttaagttcattcatttaatgatgtatgtagtccata 34100170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 35579453 - 35579487
Alignment:
Q  24 ggctacaccaaaaaatagtattgcttttattaata 58  Q
    |||||||||||||||||||||||| ||||||||||    
T  35579453 ggctacaccaaaaaatagtattgcctttattaata 35579487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 16391703 - 16391747
Alignment:
Q  192 attttttaagtttattcatttaacgatgtatgtagtccataatat 236  Q
    |||||||||||| ||||| |||||||||||||| |||| ||||||    
T  16391703 attttttaagttcattcaattaacgatgtatgtggtccgtaatat 16391747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University