View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18038_high_17 (Length: 252)

Name: NF18038_high_17
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18038_high_17
NF18038_high_17
[»] chr6 (19 HSPs)
chr6 (114-241)||(34873028-34873156)
chr6 (1-111)||(1376441-1376551)
chr6 (1-111)||(1384189-1384299)
chr6 (27-109)||(13423069-13423151)
chr6 (6-111)||(31869147-31869252)
chr6 (14-106)||(27612962-27613054)
chr6 (27-106)||(33651121-33651200)
chr6 (14-111)||(28630186-28630283)
chr6 (46-111)||(9082950-9083015)
chr6 (1-111)||(6531067-6531178)
chr6 (50-110)||(16337142-16337202)
chr6 (6-56)||(12588317-12588367)
chr6 (129-173)||(9919200-9919244)
chr6 (6-110)||(22079451-22079555)
chr6 (49-109)||(31760176-31760236)
chr6 (6-68)||(18065020-18065081)
chr6 (6-68)||(31883233-31883295)
chr6 (8-69)||(277072-277133)
chr6 (8-69)||(34047468-34047529)
[»] chr1 (30 HSPs)
chr1 (14-112)||(12999708-12999806)
chr1 (8-111)||(30973634-30973737)
chr1 (6-112)||(33076199-33076305)
chr1 (19-109)||(49931646-49931736)
chr1 (6-104)||(49446687-49446789)
chr1 (8-111)||(30536071-30536172)
chr1 (8-102)||(49020301-49020395)
chr1 (14-104)||(34817938-34818028)
chr1 (8-104)||(29359825-29359921)
chr1 (29-111)||(26501173-26501255)
chr1 (6-104)||(29877377-29877475)
chr1 (8-104)||(30745068-30745164)
chr1 (8-104)||(30766519-30766615)
chr1 (14-112)||(11947883-11947981)
chr1 (8-113)||(30519509-30519614)
chr1 (6-71)||(49570076-49570141)
chr1 (12-104)||(32831061-32831153)
chr1 (14-70)||(36750412-36750468)
chr1 (43-105)||(4629641-4629703)
chr1 (6-111)||(18434874-18434979)
chr1 (6-114)||(11597716-11597824)
chr1 (6-70)||(23665653-23665717)
chr1 (8-112)||(50775042-50775146)
chr1 (6-68)||(4857990-4858051)
chr1 (6-68)||(48261219-48261281)
chr1 (6-68)||(50242390-50242452)
chr1 (8-69)||(29359718-29359779)
chr1 (8-69)||(34768210-34768271)
chr1 (14-58)||(8846061-8846105)
chr1 (20-56)||(44517903-44517939)
[»] chr3 (34 HSPs)
chr3 (14-111)||(49761073-49761170)
chr3 (6-111)||(37894128-37894233)
chr3 (6-109)||(48944599-48944702)
chr3 (14-111)||(52100348-52100445)
chr3 (6-110)||(16479712-16479816)
chr3 (6-112)||(54099242-54099348)
chr3 (20-107)||(23868869-23868956)
chr3 (8-111)||(52485554-52485657)
chr3 (6-104)||(36755944-36756042)
chr3 (6-104)||(51698938-51699036)
chr3 (6-104)||(1436896-1436994)
chr3 (14-112)||(33796354-33796452)
chr3 (6-111)||(45186438-45186543)
chr3 (8-77)||(45657690-45657759)
chr3 (6-70)||(52714813-52714877)
chr3 (6-112)||(26772448-26772555)
chr3 (6-112)||(34592144-34592250)
chr3 (14-111)||(35376968-35377065)
chr3 (15-70)||(49021800-49021855)
chr3 (6-95)||(26550317-26550406)
chr3 (14-111)||(29780985-29781082)
chr3 (6-102)||(36907120-36907216)
chr3 (8-103)||(47742364-47742459)
chr3 (12-70)||(29916955-29917013)
chr3 (12-70)||(29966108-29966166)
chr3 (8-111)||(36121902-36122005)
chr3 (6-59)||(48287751-48287804)
chr3 (6-70)||(48353076-48353140)
chr3 (6-104)||(26452616-26452714)
chr3 (27-67)||(5527444-5527484)
chr3 (76-108)||(51771354-51771386)
chr3 (44-112)||(52089820-52089888)
chr3 (27-59)||(52963254-52963286)
chr3 (6-54)||(53870976-53871024)
[»] chr8 (29 HSPs)
chr8 (7-111)||(33539486-33539590)
chr8 (6-114)||(43715954-43716062)
chr8 (6-110)||(25830133-25830237)
chr8 (8-112)||(67046-67150)
chr8 (6-112)||(35792118-35792224)
chr8 (6-104)||(6440161-6440259)
chr8 (6-112)||(12656002-12656108)
chr8 (6-104)||(35067240-35067338)
chr8 (1-104)||(41639691-41639794)
chr8 (16-112)||(3270766-3270862)
chr8 (1-104)||(42786551-42786654)
chr8 (20-104)||(5574349-5574433)
chr8 (14-104)||(3413086-3413176)
chr8 (6-109)||(7814476-7814584)
chr8 (8-101)||(33100367-33100460)
chr8 (20-104)||(39453210-39453294)
chr8 (7-71)||(42619907-42619971)
chr8 (6-104)||(45405611-45405709)
chr8 (14-109)||(7795188-7795288)
chr8 (35-112)||(36969560-36969637)
chr8 (6-70)||(6972234-6972298)
chr8 (6-81)||(7777098-7777171)
chr8 (42-110)||(12339046-12339113)
chr8 (6-110)||(38675683-38675787)
chr8 (6-57)||(10902784-10902835)
chr8 (8-70)||(13970998-13971060)
chr8 (8-109)||(8671444-8671545)
chr8 (14-111)||(37133749-37133846)
chr8 (6-70)||(43285890-43285954)
[»] chr4 (29 HSPs)
chr4 (6-111)||(49585074-49585179)
chr4 (8-111)||(1795868-1795971)
chr4 (6-110)||(50980670-50980774)
chr4 (6-110)||(11546788-11546892)
chr4 (6-110)||(55609052-55609156)
chr4 (8-102)||(48649600-48649694)
chr4 (6-109)||(193612-193715)
chr4 (7-110)||(19165319-19165423)
chr4 (6-110)||(44257618-44257721)
chr4 (6-104)||(16019556-16019654)
chr4 (8-104)||(47015087-47015183)
chr4 (6-111)||(36123347-36123451)
chr4 (6-95)||(46665097-46665186)
chr4 (8-104)||(15522436-15522532)
chr4 (27-106)||(32224032-32224110)
chr4 (30-110)||(34363655-34363735)
chr4 (14-104)||(34757802-34757892)
chr4 (14-104)||(34759076-34759166)
chr4 (6-112)||(50831641-50831747)
chr4 (6-82)||(31574855-31574931)
chr4 (14-110)||(42491161-42491257)
chr4 (8-58)||(38792831-38792881)
chr4 (6-52)||(48796478-48796524)
chr4 (43-111)||(624198-624266)
chr4 (8-111)||(9118751-9118854)
chr4 (6-67)||(19232065-19232125)
chr4 (6-67)||(37997333-37997394)
chr4 (8-69)||(39478518-39478579)
chr4 (8-111)||(56271441-56271544)
[»] chr2 (29 HSPs)
chr2 (14-111)||(45420223-45420320)
chr2 (6-112)||(3771451-3771557)
chr2 (1-111)||(12784283-12784393)
chr2 (6-107)||(4657381-4657482)
chr2 (8-111)||(17999564-17999667)
chr2 (14-110)||(1040601-1040697)
chr2 (15-104)||(21738511-21738600)
chr2 (14-104)||(7084608-7084698)
chr2 (6-104)||(19843564-19843662)
chr2 (6-111)||(29449291-29449395)
chr2 (8-104)||(42532632-42532728)
chr2 (8-111)||(40700277-40700380)
chr2 (38-104)||(26290744-26290810)
chr2 (16-104)||(43658605-43658693)
chr2 (14-104)||(12070935-12071025)
chr2 (1-70)||(33616542-33616611)
chr2 (29-112)||(4319809-4319892)
chr2 (7-70)||(45259216-45259279)
chr2 (8-70)||(6336332-6336394)
chr2 (6-112)||(27490616-27490722)
chr2 (6-111)||(14328461-14328566)
chr2 (14-71)||(18737800-18737857)
chr2 (6-70)||(40599208-40599270)
chr2 (35-111)||(40357973-40358049)
chr2 (8-105)||(5032004-5032102)
chr2 (37-82)||(18982951-18982996)
chr2 (14-110)||(23690396-23690492)
chr2 (6-70)||(36774618-36774682)
chr2 (35-103)||(39309518-39309586)
[»] scaffold0053 (1 HSPs)
scaffold0053 (6-110)||(12577-12681)
[»] chr5 (21 HSPs)
chr5 (6-110)||(22098335-22098439)
chr5 (14-113)||(16690587-16690686)
chr5 (8-109)||(32639125-32639226)
chr5 (8-104)||(38493706-38493803)
chr5 (8-104)||(9168061-9168156)
chr5 (190-241)||(27947316-27947367)
chr5 (6-110)||(38293245-38293350)
chr5 (14-104)||(884529-884619)
chr5 (6-107)||(40364648-40364749)
chr5 (34-102)||(14321850-14321918)
chr5 (44-95)||(26686996-26687047)
chr5 (44-95)||(26956727-26956778)
chr5 (44-102)||(34940751-34940809)
chr5 (8-110)||(40829496-40829598)
chr5 (14-111)||(4088531-4088628)
chr5 (8-105)||(6940042-6940140)
chr5 (8-104)||(6758683-6758780)
chr5 (6-51)||(13461844-13461889)
chr5 (8-68)||(19844240-19844300)
chr5 (6-54)||(29463075-29463123)
chr5 (8-111)||(41175593-41175696)
[»] chr7 (21 HSPs)
chr7 (6-104)||(35822868-35822966)
chr7 (20-101)||(44496699-44496780)
chr7 (6-110)||(31398204-31398308)
chr7 (14-102)||(41590415-41590503)
chr7 (6-111)||(48145604-48145697)
chr7 (6-70)||(40854582-40854646)
chr7 (6-112)||(26018120-26018226)
chr7 (8-70)||(42598135-42598197)
chr7 (14-106)||(41589977-41590066)
chr7 (8-104)||(36352477-36352574)
chr7 (8-104)||(41430045-41430141)
chr7 (8-104)||(42584884-42584980)
chr7 (6-104)||(34507099-34507197)
chr7 (10-112)||(41458679-41458781)
chr7 (6-68)||(2008762-2008823)
chr7 (43-101)||(44651126-44651184)
chr7 (14-72)||(47012495-47012553)
chr7 (6-59)||(4292507-4292560)
chr7 (8-100)||(46829560-46829653)
chr7 (8-68)||(35207582-35207642)
chr7 (33-112)||(46259979-46260056)
[»] scaffold0662 (1 HSPs)
scaffold0662 (8-104)||(1226-1322)
[»] scaffold0687 (1 HSPs)
scaffold0687 (6-109)||(7139-7247)
[»] scaffold0013 (1 HSPs)
scaffold0013 (6-68)||(94811-94873)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 34873156 - 34873028
Alignment:
Q  114 aacaatggctaatatata-tctatcatctaccttagtttactacggagacatcagttctatttcataattaaaaaccatacatgccgtttgtttttgaaa 212  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  34873156 aacaatggctaatacataatctatcaactaccttagtttactacggaggcatcagttctatttcataatcaaaatccatacatgccgtttgtttttgaaa 34873057  T
Q  213 ttctcgtctttgcattatcatttcatctc 241  Q
    |||||||||||||||||||||||||||||    
T  34873056 ttctcgtctttgcattatcatttcatctc 34873028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1376441 - 1376551
Alignment:
Q  1 ctttatctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaat 100  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1376441 ctttatctctctctattacttttatatttgtgtcaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaat 1376540  T
Q  101 aacactactct 111  Q
    |||||||||||    
T  1376541 aacactactct 1376551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1384189 - 1384299
Alignment:
Q  1 ctttatctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaat 100  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1384189 ctttatctctctctattacttttatatttgtgtcaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaat 1384288  T
Q  101 aacactactct 111  Q
    |||||||||||    
T  1384289 aacactactct 1384299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 13423069 - 13423151
Alignment:
Q  27 tttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 109  Q
    ||||||||||||||||||||||||||||||||| | |||||| | || ||||||||  |||| ||||||||||||||||||||    
T  13423069 tttgtgccaatacatatttttctttgtaaaaatatagttgtccacttggttgtcaaataaatggatgttcaaataacactact 13423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 31869147 - 31869252
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| || ||||||||||||||||| |||||||||||   |  |||| ||||  ||||||||||||| ||||||||||||||||    
T  31869147 tctctctctattactttgattttcgtgccaatacatattttcctttgtaaaaacaagagtgtctatttgattgtcaagcaaatagatgttcaaataacac 31869246  T
Q  106 tactct 111  Q
    ||||||    
T  31869247 tactct 31869252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 27612962 - 27613054
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 106  Q
    |||| ||||||| || ||| ||||||||||||||||||||||| || |||||||| ||||  ||||||| ||||| |||||||||||||||||    
T  27612962 tattactttgattttcgtgtcaatacatatttttctttgtaaacatatggttgtccatttgattgtcaaacaaatagatgttcaaataacact 27613054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 33651121 - 33651200
Alignment:
Q  27 tttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 106  Q
    ||||| |||||||||| |||||||||||||||| |||||||| ||||  ||||||| ||||| |||||||||||||||||    
T  33651121 tttgtaccaatacataattttctttgtaaaaatatggttgtctatttgattgtcaaacaaatggatgttcaaataacact 33651200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 28630186 - 28630283
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||| ||||||| |||||||||| ||||  |||| ||||||||||| |||||||| ||||||||||||  ||||| |||||||| |||||| ||||||    
T  28630186 tattactttgatttttgtgccaacacatgcttttatttgtaaaaatatggttgtctatttagttgtcacacaaatagatgttcatataacattactct 28630283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 9083015 - 9082950
Alignment:
Q  46 ttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||| |||||||||||||||||| |||| ||| |||   |||||||||||||||||||||||||||    
T  9083015 ttctgtgtaaaaatgtggttgtccatttggttatcacataaattgatgttcaaataacactactct 9082950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 6531178 - 6531067
Alignment:
Q  1 ctttatctctctat-attgctttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaa 98  Q
    |||||||||||||| ||||||||||| || |||| |||||||| ||||||||||||||  | ||||||||   |||||| |||| ||||| | |||||||    
T  6531178 ctttatctctctattattgctttgattttcgtgcaaatacatactttttctttgtaaat-tatggttgtcccattagttatcaaccaaatggttgttcaa 6531080  T
Q  99 ataacactactct 111  Q
    |||||||| ||||    
T  6531079 ataacactcctct 6531067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 16337142 - 16337202
Alignment:
Q  50 ttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 110  Q
    |||||||||| |||||||| |||| ||||||||  |||| |||||||||||||||||||||    
T  16337142 ttgtaaaaatatggttgtctatttggttgtcaattaaatggatgttcaaataacactactc 16337202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 12588367 - 12588317
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaa 56  Q
    ||||||| |||||||||||| ||||||||| ||||||| ||||||||||||    
T  12588367 tctctctctattgctttgatttttgtgccactacatatatttctttgtaaa 12588317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 9919200 - 9919244
Alignment:
Q  129 atatctatcatctaccttagtttactacggagacatcagttctat 173  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||    
T  9919200 atatctatcaactaccttagtttactacggaggcatcacttctat 9919244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 22079555 - 22079451
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||||||||||| |||||| ||||||||  ||||||||| |||| | |||||||||    ||| ||||   |||| ||||||||||||||||    
T  22079555 tctctctctattgctttgatttttgtgtcaatacatcattttctttgcaaaattttggttgtcacaaaagtggtcatctaaatggatgttcaaataacac 22079456  T
Q  106 tactc 110  Q
     ||||    
T  22079455 aactc 22079451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 31760236 - 31760176
Alignment:
Q  49 tttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 109  Q
    |||||| ||| ||||||||  |||| |||||||| ||||| ||||||||||||||||||||    
T  31760236 tttgtataaacgtggttgtttatttggttgtcaaacaaatggatgttcaaataacactact 31760176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 18065081 - 18065020
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 68  Q
    ||||||| |||||||||||||||||||||| ||| ||  ||||||||| | ||||||||||||    
T  18065081 tctctctctattgctttgatatttgtgccactacctaaatttctttgt-ataatgtggttgtc 18065020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 31883295 - 31883233
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 68  Q
    ||||||| |||||||||||| |||||| ||| || | ||||||||||||||| | ||||||||    
T  31883295 tctctctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtc 31883233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 277072 - 277133
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtca 69  Q
    ||||| |||||||||||| |||||| ||||| ||  |||||||||||||| | |||||||||    
T  277072 tctctctattgctttgatttttgtgtcaatatatcattttctttgtaaaattttggttgtca 277133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 34047468 - 34047529
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtca 69  Q
    ||||| |||||||||| | ||||||||||||  | ||||||||||||||| | |||||||||    
T  34047468 tctctctattgctttggtttttgtgccaatatctctttttctttgtaaaattttggttgtca 34047529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 12999806 - 12999708
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12999806 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacactactcta 12999708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 30973634 - 30973737
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  30973634 tctctctattactttgatatttgtgtcaatacatacttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaattgatgttcaaataacacta 30973733  T
Q  108 ctct 111  Q
    ||||    
T  30973734 ctct 30973737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 33076199 - 33076305
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||    
T  33076199 tctctctctattactttgatatttgtgccaatacataattttctttgtaaaattgtggttgtccatttaattatcaagcaaattgatgttcaaataacac 33076298  T
Q  106 tactcta 112  Q
    | |||||    
T  33076299 tgctcta 33076305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 49931646 - 49931736
Alignment:
Q  19 ctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 109  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  49931646 ctttgatatttgtgccaatacatacttttctttggaaaaatgtggttgtccatttagttatcaagcaaattgatgttcaaataacactact 49931736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 49446789 - 49446687
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacata----tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 101  Q
    ||||||| |||| ||||||||||||||||||||||||    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  49446789 tctctctctattactttgatatttgtgccaatacatacatatttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaattgatgttcaaata 49446690  T
Q  102 aca 104  Q
    |||    
T  49446689 aca 49446687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 30536071 - 30536172
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||| ||||||||||||||||||  |||| |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  30536071 tctctctattactttgatatttgtgccaa--catacttttctttgtaaaaatgtggttgtccgtttagttgttaagcaaattgatgttcaaataacacta 30536168  T
Q  108 ctct 111  Q
    ||||    
T  30536169 ctct 30536172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 49020395 - 49020301
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 102  Q
    ||||| ||||| |||| | |||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  49020395 tctctctattgttttggtttttgtgccaatatatatttttctttgtaaaaatatggttgtcaatttggttgtcaaccaaattgatgttcaaataa 49020301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 34818028 - 34817938
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |  |||||||  ||||||||||||||||||||    
T  34818028 tattgctttgatttttgtgccaacacatatttttctttgtaaaaatatggttgtcaatatgattgtcaactaaattgatgttcaaataaca 34817938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 29359825 - 29359921
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||||||  | |||||| ||| ||||| |||||||| ||||||| ||||||||||| | |||||||| |||||||||||||||||||||    
T  29359825 tctctctattgcttttgtttttgtgtcaacacatacttttctttataaaaatatggttgtcaatgtggttgtcaatcaaattgatgttcaaataaca 29359921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 26501255 - 26501173
Alignment:
Q  29 tgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||||||||||| |  ||||||| ||||||||||||||||||||| ||||| | | | ||||||||||||||||||| |||||    
T  26501255 tgtgccaatacacacatttctttctaaaaatgtggttgtcaatttggttgtaacgtacattgatgttcaaataacaccactct 26501173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 29877377 - 29877475
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| ||||| |||| | || ||| ||||||||| |||||||||||||||| |||||||| || |  |||||||  ||||||||||||||||||||    
T  29877377 tctctctctattgttttggttttcgtgtcaatacataattttctttgtaaaaatatggttgtccatatgattgtcaataaaattgatgttcaaataaca 29877475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 30745068 - 30745164
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| ||||| |||| | |||||| ||||||||| |||||||||||| | | |||||||| || | |||||||| |||||| ||||||||||||||    
T  30745068 tctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttcaaataaca 30745164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 30766519 - 30766615
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| ||||| |||| | |||||| ||||||||| |||||||||||| | | |||||||| || | |||||||| |||||| ||||||||||||||    
T  30766519 tctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttcaaataaca 30766615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 11947883 - 11947981
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 112  Q
    |||| |||| || ||||||| || ||||  |||| ||||||||||| |||||||| ||||||||||||  ||||| |||||||| |||||| |||||||    
T  11947883 tattactttaatttttgtgcaaacacatgcttttatttgtaaaaatatggttgtctatttagttgtcacacaaatagatgttcatataacattactcta 11947981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 30519614 - 30519509
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||||||||| | || |||  |||||||  |||||||||||||||  |||||||| || | |||||||| || |||||||||||||||||| |     
T  30519614 tctctttattgctttggttttcgtgttaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataacattg 30519515  T
Q  108 ctctag 113  Q
    ||||||    
T  30519514 ctctag 30519509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 49570076 - 49570141
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaat 71  Q
    ||||||| ||||| |||||| |||||||||| ||||| |||||||| ||||||| |||||||||||    
T  49570076 tctctctctattgttttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaat 49570141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 32831153 - 32831061
Alignment:
Q  12 tatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||||| ||||||| ||  || |||| |||| |||||||||||||||  |||||||| |||| ||||||| |||||| |||||||||| ||||    
T  32831153 tatattactttgattttcatgtcaatccatacttttctttgtaaaaacatggttgtctatttggttgtcaggcaaatagatgttcaaacaaca 32831061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 36750468 - 36750412
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    |||||||||| | |||||||||| ||||| |||||||||||||||| ||||||||||    
T  36750468 tattgctttgttttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 36750412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 4629703 - 4629641
Alignment:
Q  43 tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    |||||||||||||| ||||||||||||| | ||||||||| | ||| | ||||||||||||||    
T  4629703 tttttctttgtaaagatgtggttgtcaaataagttgtcaatctaatagttgttcaaataacac 4629641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 18434874 - 18434979
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| ||||| |||||| |||||||||||||||  ||||||||| |||| | |||||||||    ||||||||   |||| ||| ||||||||||||    
T  18434874 tctctctttattgttttgatttttgtgccaatacatcattttctttgcaaaattttggttgtcacaaaagttgtcatctaaatagattttcaaataacac 18434973  T
Q  106 tactct 111  Q
     |||||    
T  18434974 aactct 18434979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 11597716 - 11597824
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| ||||| |||| | || |||| ||||  || |||||||||||||  | ||||||||   | ||||||||||||||| ||||||||||||||||    
T  11597716 tctctctctattgttttggttttcgtgctaatatctacttttctttgtaaatctatggttgtcccataagttgtcaagcaaatggatgttcaaataacac 11597815  T
Q  106 tactctaga 114  Q
      |||||||    
T  11597816 acctctaga 11597824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 23665717 - 23665653
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    |||||||  ||||||||| | |||||| ||| ||||| |||||||||||||||| ||||||||||    
T  23665717 tctctctcaattgctttggtttttgtgtcaacacatacttttctttgtaaaaatatggttgtcaa 23665653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 50775146 - 50775042
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||||||||| | |||||| ||| |||| ||||||||||||||| | |||||||||    | ||||||| ||||| |  ||||||||||||| |    
T  50775146 tctctctattgctttggtttttgtgtcaacacatctttttctttgtaaaattatggttgtcacaaaatttgtcaatcaaatggtcgttcaaataacacaa 50775047  T
Q  108 ctcta 112  Q
    |||||    
T  50775046 ctcta 50775042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 4857990 - 4858051
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 68  Q
    ||||||| |||||||||||||||||||||| ||| ||  ||||||||| | ||||||||||||    
T  4857990 tctctctctattgctttgatatttgtgccactacttaaatttctttgt-ataatgtggttgtc 4858051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 48261219 - 48261281
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 68  Q
    ||||||| |||||||||| | ||||||||||||| | |||| |||||||||||| || |||||    
T  48261219 tctctctctattgctttggtttttgtgccaatacctcttttcctttgtaaaaatatgattgtc 48261281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 50242390 - 50242452
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 68  Q
    ||||||| |||| ||||| | || ||||||||||||| ||||||||||||| || ||||||||    
T  50242390 tctctctctattactttggttttcgtgccaatacatacttttctttgtaaatatatggttgtc 50242452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 29359718 - 29359779
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtca 69  Q
    ||||| |||||||||| | ||||||||| |||||  |||||||||||||| | |||||||||    
T  29359718 tctctctattgctttggtttttgtgccattacatcattttctttgtaaaattttggttgtca 29359779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 34768210 - 34768271
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtca 69  Q
    ||||| |||||||||| | || |||| ||||||||  ||||||||||||||| |||||||||    
T  34768210 tctctctattgctttggttttcgtgcaaatacatacatttctttgtaaaaatatggttgtca 34768271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 8846061 - 8846105
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaa 58  Q
    |||||||||| | |||||| |||||||| ||||||||||||||||    
T  8846061 tattgctttggtttttgtgtcaatacatctttttctttgtaaaaa 8846105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 44517939 - 44517903
Alignment:
Q  20 tttgatatttgtgccaatacatatttttctttgtaaa 56  Q
    |||||| |||||| |||||||||||||||||||||||    
T  44517939 tttgatttttgtgtcaatacatatttttctttgtaaa 44517903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 49761170 - 49761073
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  49761170 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttgaaataacactactct 49761073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 37894233 - 37894128
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37894233 tctctctctattactttgatatttgtgtcaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacac 37894134  T
Q  106 tactct 111  Q
    ||||||    
T  37894133 tactct 37894128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 48944702 - 48944599
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||||    
T  48944702 tctctctctattactttgatatttgtgccaatacatatttttctttgtaaaaatatgattgttcatttagttgtcaagcaaattgatgttcaaataacac 48944603  T
Q  106 tact 109  Q
    ||||    
T  48944602 tact 48944599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 52100348 - 52100445
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  52100348 tattactttgatatttatgctaatacatatttttctttgtaaaaatatgattgtccatttaattgtcaagcaaattgatgttcaaataacactactct 52100445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 16479712 - 16479816
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| || |||||||||||||||||||||||||||||   ||||||| |||| |||||||||||||| ||||||||||||||||    
T  16479712 tctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttcaaataacac 16479811  T
Q  106 tactc 110  Q
    |||||    
T  16479812 tactc 16479816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 54099348 - 54099242
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||||||||||| ||| |||||| | ||| |||||||||||||||| || |||||||| || ||||||| |||||||||||||||||||||     
T  54099348 tctctctctattgctttgatttttatgccaacatatacttttctttgtaaaaatatgattgtcaatgtaattgtcaaccaaattgatgttcaaataacat 54099249  T
Q  106 tactcta 112  Q
    |||||||    
T  54099248 tactcta 54099242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 23868956 - 23868869
Alignment:
Q  20 tttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    |||||| ||||||||||||||| |||||| |||||||||| || ||||| |||| |||||||||||||| ||||||||||||||||||    
T  23868956 tttgatttttgtgccaatacatttttttccttgtaaaaatatgattgtctatttggttgtcaagcaaatagatgttcaaataacacta 23868869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 52485554 - 52485657
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||||||||| | || ||||||||||||| |||||||||||||||| |||||||| |||  |||||||| ||||| |||||||||||||||| |    
T  52485554 tctctctattgctttggttttcgtgccaatacatacttttctttgtaaaaatatggttgtccattaggttgtcaaacaaatagatgttcaaataacacaa 52485653  T
Q  108 ctct 111  Q
    ||||    
T  52485654 ctct 52485657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 36756042 - 36755944
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| |||||||||||| |||||||||| | ||| |||||||||||||||| ||||||||||| |  ||||||| ||||||||| |||||||||||    
T  36756042 tctctctctattgctttgatttttgtgccaacatatacttttctttgtaaaaatatggttgtcaatgtgattgtcaatcaaattgatattcaaataaca 36755944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 51698938 - 51699036
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| ||||| |||| | |||||||||| ||||| |||||||||||| ||| ||||||||||| | |||||||| |||||||||||||||||||||    
T  51698938 tctctctctattgatttggtttttgtgccaacacatacttttctttgtaagaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataaca 51699036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 1436896 - 1436994
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| ||||| |||  | |||||||||| ||||| |||||||||||||||| ||||||||||| | ||||| || |||||||||||||||||||||    
T  1436896 tctctctctattgttttattttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtaaaccaaattgatgttcaaataaca 1436994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 33796354 - 33796452
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 112  Q
    |||| ||||||| |||||||||| ||||| |||||||| ||||||| ||||||||||| |  ||||||| ||||||||| ||||||||||| |||||||    
T  33796354 tattactttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaatgtgattgtcaaccaaattgattttcaaataacattactcta 33796452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 45186543 - 45186438
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| ||  || ||||||||| ||||| |||||||| | |||||||| |||| |||||||| ||||||||||||| ||||||||    
T  45186543 tctctctctattactttgattttcttgtcaatacatacttttcgttgtaaaagtatggttgtccatttggttgtcaaacaaattgatgttcgaataacac 45186444  T
Q  106 tactct 111  Q
    ||||||    
T  45186443 tactct 45186438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 45657759 - 45657690
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagtt 77  Q
    ||||| |||| |||||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||    
T  45657759 tctctctattactttgatatttgtgccaatacatacttttctttatataaatgtgattgtcaatttagtt 45657690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 52714813 - 52714877
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| ||||||||||    
T  52714813 tctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 52714877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 26772448 - 26772555
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttcttt-gtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| ||||  |||||| || ||| ||||||||| |||||||| ||||||||  ||||||| |||| | |||||| ||||| |||||||||||||||    
T  26772448 tctctctctattattttgattttcgtgtcaatacatagttttcttttgtaaaaataaggttgtctatttggatgtcaaacaaatagatgttcaaataaca 26772547  T
Q  105 ctactcta 112  Q
    ||||||||    
T  26772548 ctactcta 26772555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 34592144 - 34592250
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| || ||| ||||||||| |||||||||||||||    |||||| ||||   |||||| ||||| ||||||||||||||||    
T  34592144 tctctctttattactttgattttcgtgtcaatacatacttttctttgtaaaaacaatgttgtctatttgactgtcaaacaaatagatgttcaaataacac 34592243  T
Q  106 tactcta 112  Q
    |||||||    
T  34592244 tactcta 34592250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 35377065 - 35376968
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||||||||||| |||||||||||||||  |||||||||||||| | |||||||||    ||||||||   |||| |||||||||||||||| |||||    
T  35377065 tattgctttgatttttgtgccaatacatcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactct 35376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 49021800 - 49021855
Alignment:
Q  15 attgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||||||||| |||||||||| ||||| |||||||||||||||| ||||||||||    
T  49021800 attgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 49021855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 26550317 - 26550406
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 95  Q
    ||||||| |||| |||| || ||||||| | |||| | ||||||||||||||||||| ||||| |||| |||||||  ||||||||||||    
T  26550317 tctctctctattactttaatttttgtgctagtacacacttttctttgtaaaaatgtgattgtccatttggttgtcacacaaattgatgtt 26550406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 29780985 - 29781082
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    ||||| |||||| || ||||||||||| | |||||||| ||||||| || ||||| || |  ||||||| ||||||||||| ||||||||| ||||||    
T  29780985 tattgttttgattttcgtgccaatacaaacttttctttataaaaatatgattgtccatatgattgtcaatcaaattgatgtccaaataacattactct 29781082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 36907120 - 36907216
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 102  Q
    ||||||| |||| ||||| | || |||| ||||||||| ||||||||||||||| |||||||| |||  ||||  || ||||| |||||||||||||    
T  36907120 tctctctctattactttgtttttcgtgcaaatacatatatttctttgtaaaaatatggttgtccattaggttgctaaacaaatagatgttcaaataa 36907216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 47742364 - 47742459
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataac 103  Q
    ||||| ||||||||| || ||||| |||| ||||| || |||| |||||||| | ||||| ||| | |||||||| ||||||| ||||||||||||    
T  47742364 tctctctattgctttaatttttgttccaacacatacttctcttcgtaaaaatatagttgttaatgtggttgtcaaccaaattgctgttcaaataac 47742459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 29917013 - 29916955
Alignment:
Q  12 tatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    |||||||||||||| |||||| ||| ||||| ||| |||||||||||| ||||||||||    
T  29917013 tatattgctttgatttttgtgtcaacacatactttcctttgtaaaaatatggttgtcaa 29916955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 29966166 - 29966108
Alignment:
Q  12 tatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    |||||||||||||| |||||| ||| ||||| ||| |||||||||||| ||||||||||    
T  29966166 tatattgctttgatttttgtgtcaacacatactttcctttgtaaaaatatggttgtcaa 29966108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 36121902 - 36122005
Alignment:
Q  8 tctctatattgctttgatatttgtgccaata-catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaatt-gatgttcaaataacac 105  Q
    ||||| ||||||| |||| |||||||||||| || |||||||||||| ||||| |||||||||| | ||||||| | |||||| | ||||||||||||||    
T  36121902 tctctctattgctatgatttttgtgccaataccacatttttctttgt-aaaatatggttgtcaaataagttgtc-accaaattggttgttcaaataacac 36121999  T
Q  106 tactct 111  Q
    | ||||    
T  36122000 tcctct 36122005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 48287751 - 48287804
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaat 59  Q
    ||||||| |||| ||||||| || |||| |||||||||||||||||||||||||    
T  48287751 tctctctctattactttgattttcgtgctaatacatatttttctttgtaaaaat 48287804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 48353076 - 48353140
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||||| |||||||||||| ||||| |||| ||||| |||||||| ||||||| || |||||||    
T  48353076 tctctctctattgctttgatttttgtaccaacacatacttttctttataaaaatatgattgtcaa 48353140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 26452714 - 26452616
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| |||||||||||| |   || ||||||||  |||||||||||||||  || ||||| || || ||||||| || |||||| |||||||||||    
T  26452714 tctctctctattgctttgatttccctgtcaatacatgattttctttgtaaaaagatgattgtccatataattgtcaatcacattgatattcaaataaca 26452616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 5527444 - 5527484
Alignment:
Q  27 tttgtgccaatacatatttttctttgtaaaaatgtggttgt 67  Q
    |||||| |||||||||| ||||||||||||||| |||||||    
T  5527444 tttgtgtcaatacatatatttctttgtaaaaatatggttgt 5527484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 51771386 - 51771354
Alignment:
Q  76 ttgtcaagcaaattgatgttcaaataacactac 108  Q
    ||||||||||||| |||||||||||||||||||    
T  51771386 ttgtcaagcaaatagatgttcaaataacactac 51771354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 52089888 - 52089820
Alignment:
Q  44 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 112  Q
    ||||||||||||||||    ||||| |||||||||||||   ||| |||||| ||||||||||||||||    
T  52089888 ttttctttgtaaaaataaaattgtctatttagttgtcaaattaatagatgtttaaataacactactcta 52089820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 52963286 - 52963254
Alignment:
Q  27 tttgtgccaatacatatttttctttgtaaaaat 59  Q
    |||||| ||||||||||||||||||||||||||    
T  52963286 tttgtgtcaatacatatttttctttgtaaaaat 52963254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 53871024 - 53870976
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgta 54  Q
    ||||||| |||||||||| |||||||||||||||  || ||||||||||    
T  53871024 tctctctctattgctttggtatttgtgccaatactcatatttctttgta 53870976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 33539486 - 33539590
Alignment:
Q  7 ctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 106  Q
    |||||| |||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33539486 ctctctctattactttgatatttgtgccaatacatacttttctttgaaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacact 33539585  T
Q  107 actct 111  Q
    |||||    
T  33539586 actct 33539590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 43715954 - 43716062
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43715954 tctctctctattactttgatatttgtaccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacac 43716053  T
Q  106 tactctaga 114  Q
    |||||||||    
T  43716054 tactctaga 43716062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 25830237 - 25830133
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  25830237 tctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatgtggttgtccatttagttgttaaacaaattgatgttcaaataacac 25830138  T
Q  106 tactc 110  Q
    |||||    
T  25830137 tactc 25830133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 67150 - 67046
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||| |||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  67150 tctctctattactttgatatttgtgccaatacatgattttctttgtaaaaatgtggttgtctatttggttgtcaagcaaattaatgttcaaataacacta 67051  T
Q  108 ctcta 112  Q
    |||||    
T  67050 ctcta 67046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 35792118 - 35792224
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||||||||||||| |||| ||  |||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  35792118 tctctctctattactttgatatttgtgccaatacatactttttttgataaaaatgtggttgtccatttagttgtcaagcaaattggtgttcaaataacac 35792217  T
Q  106 tactcta 112  Q
    | |||||    
T  35792218 tcctcta 35792224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 6440161 - 6440259
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| | |||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||    
T  6440161 tctctctttcttgctttgatttttgtgtcaatacatacttttctttgtaaaaatatggttgtcaatttggttgtcaaccaagttgatgttcaaataaca 6440259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 12656002 - 12656108
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||| || ||||||||||| |||| |||||||||||||||  |||||||| |||| |||||||||||||| ||||||||||||||||    
T  12656002 tctctctctattactttcatttttgtgccaatgcatacttttctttgtaaaaacatggttgtctatttggttgtcaagcaaatagatgttcaaataacac 12656101  T
Q  106 tactcta 112  Q
    |||||||    
T  12656102 tactcta 12656108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 35067240 - 35067338
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| |||||||||| | |||||||||| ||||| |||||||||||||||| ||||||||||| | |||||||| |||||||||||||||||||||    
T  35067240 tctctctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataaca 35067338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 41639794 - 41639691
Alignment:
Q  1 ctttatctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaat 100  Q
    |||| ||||||| |||||||||||| |||||| ||| ||||| |||||||||||||||| ||||||||||  | |||||||| |||||||||||||||||    
T  41639794 ctttctctctctctattgctttgatttttgtgtcaacacatacttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaat 41639695  T
Q  101 aaca 104  Q
    ||||    
T  41639694 aaca 41639691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 3270862 - 3270766
Alignment:
Q  16 ttgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 112  Q
    |||||||||| ||||||||||| |||| |||| ||| ||||| | |||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  3270862 ttgctttgatttttgtgccaatccatacttttgtttataaaattatggttgtcaatttagttgtcaaccaagttgatgttcaaataacattactcta 3270766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 42786654 - 42786551
Alignment:
Q  1 ctttatctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaat 100  Q
    |||| ||||||| | || ||||||| |||||||||||||||||||||||||||||||   || |||||||||| |||||||| ||| |||||||||||||    
T  42786654 ctttttctctctctctttctttgatttttgtgccaatacatatttttctttgtaaaatcatgattgtcaatttggttgtcaaccaagttgatgttcaaat 42786555  T
Q  101 aaca 104  Q
    ||||    
T  42786554 aaca 42786551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 5574349 - 5574433
Alignment:
Q  20 tttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||||| ||||||  |||||||| |||||||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||    
T  5574349 tttgatttttgtgttaatacatacttttctttgtaaaaatatgggtgtcaatatagttgtcaaccaaattgatgttcaaataaca 5574433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 3413176 - 3413086
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||||||||| | |||||||||||||||  |||||||||||||||| ||  ||||||| | |||||||| |||||||||||||||||||||    
T  3413176 tattgctttggtttttgtgccaatacatgattttctttgtaaaaatatgactgtcaatgttgttgtcaaccaaattgatgttcaaataaca 3413086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 7814584 - 7814476
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttag-------ttgtcaagcaaattgatgttcaa 98  Q
    ||||||| |||| ||||||||||| || |||| |||| ||||||||||  ||||||||||||||||||||       |||||||||||||||||||||||    
T  7814584 tctctctctattactttgatatttatgtcaatgcatacttttctttgt--aaatgtggttgtcaatttagttgtcatttgtcaagcaaattgatgttcaa 7814487  T
Q  99 ataacactact 109  Q
    |||||||||||    
T  7814486 ataacactact 7814476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 33100460 - 33100367
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 101  Q
    ||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||  ||||||| |||| |||||||| ||||| ||||||||||||    
T  33100460 tctctctattactttgatttttgtgtcaatacatacttttctttgtaaaaataaggttgtctatttggttgtcaaacaaatggatgttcaaata 33100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 39453294 - 39453210
Alignment:
Q  20 tttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||||| ||| || ||||||||| |||||||||||||||| || |||||||| | |||||||| |||||||||||||||||||||    
T  39453294 tttgatttttctgtcaatacataattttctttgtaaaaatatgattgtcaatgtggttgtcaatcaaattgatgttcaaataaca 39453210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 42619971 - 42619907
Alignment:
Q  7 ctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaat 71  Q
    |||||| |||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||    
T  42619971 ctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtcaat 42619907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 45405611 - 45405709
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| |||||||||||| || ||| ||||| ||  |||||||||||||||| | |||||| || | |||||||| || ||||||||||||||||||    
T  45405611 tctctctctattgctttgattttcgtgtcaatatatgattttctttgtaaaaatatagttgtccatgtggttgtcaatcacattgatgttcaaataaca 45405709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 7795288 - 7795188
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttag-------ttgtcaagcaaattgatgttcaaataacact 106  Q
    |||| |||||||||||||| |||| |||| ||||||||||  |||||| |||||||||||||       |||||||||||||||||||||| ||||||||    
T  7795288 tattactttgatatttgtgtcaatgcatacttttctttgt--aaatgtagttgtcaatttagttgtcatttgtcaagcaaattgatgttcatataacact 7795191  T
Q  107 act 109  Q
    |||    
T  7795190 act 7795188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 36969637 - 36969560
Alignment:
Q  35 aatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 112  Q
    ||||||||| ||||||||||||||| ||||||||   | ||||||||| ||||| |||||||||||||||| ||||||    
T  36969637 aatacatatatttctttgtaaaaatatggttgtcgcataagttgtcaaacaaatggatgttcaaataacacaactcta 36969560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 6972234 - 6972298
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||||| |||||||||| | |||||||||| ||||| |||||||||||||||| ||||||||||    
T  6972234 tctctctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 6972298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 7777171 - 7777098
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtca 81  Q
    ||||||| |||| ||||||||||||||  ||| |||| ||||||||||  ||||||||||||||||||||||||||    
T  7777171 tctctctctattactttgatatttgtgttaatgcatacttttctttgt--aaatgtggttgtcaatttagttgtca 7777098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 12339113 - 12339046
Alignment:
Q  42 atttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 110  Q
    |||||||||||||||||| |||||||  ||||||||||||  |||||||||| ||||||||||||||||    
T  12339113 atttttctttgtaaaaatatggttgttcatttagttgtcacacaaattgatg-tcaaataacactactc 12339046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 38675683 - 38675787
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||| | |||||||||||||||| |||||||| ||||  | |||||||| ||||  || ||||  |||| ||||||||||||||||    
T  38675683 tctctctctatttctttggtttttgtgccaatacatacttttctttttaaagttatggttgtctatttgattatcaaataaatagatgttcaaataacac 38675782  T
Q  106 tactc 110  Q
     ||||    
T  38675783 aactc 38675787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 10902784 - 10902835
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaa 57  Q
    ||||||| |||||||||||| |||||||||||||||  ||||||||||||||    
T  10902784 tctctctctattgctttgatttttgtgccaatacatcattttctttgtaaaa 10902835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 13970998 - 13971060
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||| |||||||||||| |||||||||| ||||  |||||||| ||||||| ||||||||||    
T  13970998 tctctctattgctttgatttttgtgccaacacatgcttttctttataaaaatatggttgtcaa 13971060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 8671545 - 8671444
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||| ||||||| |||||  ||||| || ||||| ||||||||||| ||| |||| ||||  |||| || ||||| ||||||||||||||| ||    
T  8671545 tctctctattactttgatttttgtatcaatatatttttttttttgtaaaaatatggctgtccatttgattgttaaacaaatggatgttcaaataacatta 8671446  T
Q  108 ct 109  Q
    ||    
T  8671445 ct 8671444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 37133846 - 37133749
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||||||||||| |||||| ||||| ||  |||||||||||||| | |||||||||    ||||||||   |||| |||||| ||||||||| |||||    
T  37133846 tattgctttgatttttgtgtcaatatatcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttaaaataacacaactct 37133749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 43285954 - 43285890
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||||| |||||||||| | ||| |  |||||||||||||||||| ||||||| | ||||||||    
T  43285954 tctctctttattgctttggtttttatatcaatacatatttttctttctaaaaatatagttgtcaa 43285890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 49585074 - 49585179
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  49585074 tctctctctattactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattaatgttcaaataacac 49585173  T
Q  106 tactct 111  Q
    ||||||    
T  49585174 tactct 49585179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 1795971 - 1795868
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  1795971 tctctctattactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgttaagcaaattgatgttcaaataacacta 1795872  T
Q  108 ctct 111  Q
    ||||    
T  1795871 ctct 1795868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 50980670 - 50980774
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||     
T  50980670 tctctctatattactttgatatttgtgccaatacatacttttctttgtaaaaatgtgattgtccatttagttgtccagcaaattgatgtttaaataacat 50980769  T
Q  106 tactc 110  Q
    |||||    
T  50980770 tactc 50980774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 11546892 - 11546788
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||  |||||||| |||||||||||||||||||||    
T  11546892 tctctctctattactttgatatttgtgccaatacataattttttttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacac 11546793  T
Q  106 tactc 110  Q
    |||||    
T  11546792 tactc 11546788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 55609156 - 55609052
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| || |||||||||||||||||||||||||||||   ||||||| |||| |||||||||||||| ||||||||||||||||    
T  55609156 tctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttcaaataacac 55609057  T
Q  106 tactc 110  Q
    |||||    
T  55609056 tactc 55609052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 48649600 - 48649694
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 102  Q
    ||||| |||| |||||||||||||  ||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  48649600 tctctctattactttgatatttgtttcaatacatacttttctttgttaaaatgtggttgtctatttagttgtcaaacaaattgatgttcaaataa 48649694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 193612 - 193715
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| || ||| |||||||||||||||||||||||||  || ||||| |||| |||||||||||||| ||||||||||||||||    
T  193612 tctctctctattactttgattttcgtgtcaatacatatttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataacac 193711  T
Q  106 tact 109  Q
    ||||    
T  193712 tact 193715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 19165423 - 19165319
Alignment:
Q  7 ctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatt-tagttgtcaagcaaattgatgttcaaataacac 105  Q
    |||||| ||||| |||| | ||||||||||||||||||||||||||||||||| |||||||| |||  | ||||||| ||||||||||||||||||||||    
T  19165423 ctctctctattgttttggtttttgtgccaatacatatttttctttgtaaaaatatggttgtccattagatttgtcaaacaaattgatgttcaaataacac 19165324  T
Q  106 tactc 110  Q
     ||||    
T  19165323 aactc 19165319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 44257721 - 44257618
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| ||||  |||||||||||||  |||||||| |||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||    
T  44257721 tctctctctattattttgatatttgtgttaatacatacttttctttataaaaatgtgattgtccatttagttgtcaaacaaattgatgttcaaat-acac 44257623  T
Q  106 tactc 110  Q
    |||||    
T  44257622 tactc 44257618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 16019556 - 16019654
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| |||||||||||| |||||| |||  ||||||||||||| ||||||| ||||||||||| |  ||||||| |||||||||||||||||||||    
T  16019556 tctctctctattgctttgatttttgtgtcaacgcatatttttctttataaaaatatggttgtcaatatgcttgtcaatcaaattgatgttcaaataaca 16019654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 47015087 - 47015183
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||||||| | |||||||||||| ||| |||||||||||||||| || |||||||| | |||||||| |||| ||||||||||||||||    
T  47015087 tctctctattgctttggtttttgtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataaca 47015183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 36123451 - 36123347
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| ||||||| ||| |||| |||||||||||||||  || ||||| ||||  ||||||||||||| ||||||||||||||||    
T  36123451 tctctctctattactttgatttttgtgcaaatgcatacttttctttgtaaaaacatg-ttgtctatttgattgtcaagcaaatagatgttcaaataacac 36123353  T
Q  106 tactct 111  Q
    ||||||    
T  36123352 tactct 36123347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 46665186 - 46665097
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 95  Q
    ||||||| | |||||||||| ||| |||||||||||| ||||||||||||| || ||||||||||||| |||||||| ||| ||||||||    
T  46665186 tctctctcttttgctttgatttttatgccaatacatacttttctttgtaaatatatggttgtcaatttggttgtcaatcaagttgatgtt 46665097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 15522436 - 15522532
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||||||||||||||| | || ||| ||||||||  |||||||||||||||  |||||||| || | |||||||| || ||||||||||||||||||    
T  15522436 tctctatattgctttggttttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataaca 15522532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 32224032 - 32224110
Alignment:
Q  27 tttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 106  Q
    ||||||||||| |||||||| |||||||||||  ||||| || ||||||||||||||||||| ||||||| |||||||||    
T  32224032 tttgtgccaatgcatatttt-ctttgtaaaaacatggttatctatttagttgtcaagcaaatagatgttcgaataacact 32224110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 34363655 - 34363735
Alignment:
Q  30 gtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 110  Q
    ||||||||||||| |||||||||||| ||||||||||||  || || |||||| |||||  ||||||||||||||| ||||    
T  34363655 gtgccaatacatacttttctttgtaataatgtggttgtctgttaagctgtcaaacaaataaatgttcaaataacacaactc 34363735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 34757892 - 34757802
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||| |||||||||| |||| ||||||||||||||||| || |||||| | |  ||||||| ||||||||| || ||||||||    
T  34757892 tattgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatatttaaataaca 34757802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 34759166 - 34759076
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||| |||||||||| |||| ||||||||||||||||| || |||||| | |  ||||||| ||||||||| || ||||||||    
T  34759166 tattgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatatttaaataaca 34759076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 50831747 - 50831641
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||||||||||| |||||| ||| || | ||||||||||||||| | ||||||||     ||||||||| ||||| | ||||||||||||||    
T  50831747 tctctctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacac 50831648  T
Q  106 tactcta 112  Q
     ||||||    
T  50831647 aactcta 50831641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 31574931 - 31574855
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaa 82  Q
    ||||||| |||||||||||| |||||  ||||||||  |||||||||||||||  |||||||| || | ||||||||    
T  31574931 tctctctctattgctttgatttttgtatcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaa 31574855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 42491161 - 42491257
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 110  Q
    |||||||||| | ||||||||||||| | ||||||||||| ||| | ||||||||     ||||||||| ||||| | |||||||||||||| ||||    
T  42491161 tattgctttggtttttgtgccaatacctctttttctttgtgaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactc 42491257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 38792881 - 38792831
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaa 58  Q
    ||||| |||||||||||| ||||| |||| ||||| |||||||||||||||    
T  38792881 tctctctattgctttgatttttgtaccaacacatacttttctttgtaaaaa 38792831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 48796524 - 48796478
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttg 52  Q
    ||||||| | ||||||||||||||||| |||||| ||||||||||||    
T  48796524 tctctctcttttgctttgatatttgtgtcaatacctatttttctttg 48796478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 624266 - 624198
Alignment:
Q  43 tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaatt-gatgttcaaataacactactct 111  Q
    ||||||||||||||||| |||||||||| | ||||||| | |||||| | ||||||||||||||| ||||    
T  624266 tttttctttgtaaaaatatggttgtcaaataagttgtc-accaaattagttgttcaaataacacttctct 624198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 9118854 - 9118751
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatac-atatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgat-gttcaaataacac 105  Q
    ||||| ||||||| |||| || |||||||||| || ||||||||||||||| | |||||||||| | ||||||||  ||||||| | |||||||||||||    
T  9118854 tctctctattgctatgattttcgtgccaataccatttttttctttgtaaaa-tatggttgtcaaataagttgtcac-caaattggttgttcaaataacac 9118757  T
Q  106 tactct 111  Q
    | ||||    
T  9118756 tcctct 9118751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 19232125 - 19232065
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgt 67  Q
    ||||||| |||||||||||| ||||||||||||| | |||||||||| |||| | |||||||    
T  19232125 tctctctctattgctttgatttttgtgccaatac-tttttttctttgcaaaattttggttgt 19232065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 37997333 - 37997394
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgt 67  Q
    ||||||| |||||||||||| |||||| |||||| |  |||||||||||||| | |||||||    
T  37997333 tctctctctattgctttgatttttgtgtcaatacctcattttctttgtaaaattttggttgt 37997394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 39478518 - 39478579
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtca 69  Q
    |||||||||| ||||||| |||||| |||||| |  |||||||||||||| | |||||||||    
T  39478518 tctctatattactttgatttttgtgtcaatacctcattttctttgtaaaattttggttgtca 39478579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 56271441 - 56271544
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 106  Q
    ||||| |||||||||| | || |||| ||||| || ||||||||||||||  | |||||||||    ||||||||| ||||| |||||||||||||||||    
T  56271441 tctctctattgctttggttttcgtgcaaatacctactttttctttgtaaat-tatggttgtcataaaagttgtcaaacaaatggatgttcaaataacact 56271539  T
Q  107 actct 111  Q
     ||||    
T  56271540 tctct 56271544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 45420223 - 45420320
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  45420223 tattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtctatttagttgtcaaataaattgatgttcaaataacactactct 45420320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 3771451 - 3771557
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||| |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  3771451 tctctctctattactttgatatttgtgtcaatacgtacttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgacgttcaaataacac 3771550  T
Q  106 tactcta 112  Q
    |||||||    
T  3771551 tactcta 3771557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 12784393 - 12784283
Alignment:
Q  1 ctttatctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaat 100  Q
    |||| ||||||| |||| ||||||| ||| ||||||| ||||||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||    
T  12784393 ctttctctctctctattactttgatttttatgccaatgcatatttttctttgtaaaaacatggttgtctatttagttgtcaagcaaatagatgttcaaat 12784294  T
Q  101 aacactactct 111  Q
    |||||||||||    
T  12784293 aacactactct 12784283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 4657381 - 4657482
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||||||| |||||||||| | ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||    
T  4657381 tctctctctattactttgatatttatgccaatacacaattttctttgtaaaaatgtgattgtccatttggttgtcaagcaaattgatgttcaaataatac 4657480  T
Q  106 ta 107  Q
    ||    
T  4657481 ta 4657482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 17999667 - 17999564
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||| ||||||| || |||||||||||||||||||||||||||||   ||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  17999667 tctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttagttgtcaaacaaatagatgttcaaataacacta 17999568  T
Q  108 ctct 111  Q
    ||||    
T  17999567 ctct 17999564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 1040601 - 1040697
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 110  Q
    |||| ||||||| |||||||||||||||| ||||||||||||||| ||| ||||| ||||  ||||||||||||| |||||||||||||||||||||    
T  1040601 tattactttgatttttgtgccaatacatacttttctttgtaaaaacgtgattgtctatttgattgtcaagcaaatagatgttcaaataacactactc 1040697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 21738600 - 21738511
Alignment:
Q  15 attgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||||| | |||||||||| |||||||||||||||||||||| || |||||||| | |||||||| |||||||||||||||||||||    
T  21738600 attgctttggtttttgtgccaacacatatttttctttgtaaaaatatgattgtcaatgtcgttgtcaaccaaattgatgttcaaataaca 21738511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 7084698 - 7084608
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||||||||||| ||||| |||| ||||| |||||||||||||||| || |||||||| | |||||||| |||||||||||||||||||||    
T  7084698 tattgctttgatttttgtaccaacacatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataaca 7084608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 19843564 - 19843662
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| |  |||||||| |  ||||||| |||||||||||||||||||||    
T  19843564 tctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatataattgtcaatatgattgtcaaccaaattgatgttcaaataaca 19843662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 29449291 - 29449395
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| ||||||| ||| |||| |||||||||||||||  || ||||| |||| |||||||||||||| ||||||||||||||||    
T  29449291 tctctctctattactttgatttttgtgcaaatgcatacttttctttgtaaaaacatg-ttgtctatttggttgtcaagcaaatagatgttcaaataacac 29449389  T
Q  106 tactct 111  Q
    ||||||    
T  29449390 tactct 29449395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 42532728 - 42532632
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||| ||||||| || |||||||||||||||||||||| ||||||  | || ||| |||| |||||||||||||| |||||||||||||||    
T  42532728 tctctctattactttgattttcgtgccaatacatatttttctttataaaaacatagtagtctatttggttgtcaagcaaatagatgttcaaataaca 42532632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 40700277 - 40700380
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||| ||||||| || ||| ||||| |||||||| ||| ||||||  || ||||| |||| |||||||||||||| ||||||||||||||||||    
T  40700277 tctctctattactttgattttcgtgtcaatatatatttttttttataaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataacacta 40700376  T
Q  108 ctct 111  Q
    ||||    
T  40700377 ctct 40700380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 26290810 - 26290744
Alignment:
Q  38 acatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||||||||||||||||||||| || |||||||| ||||| |||| |||||||||||||||||||||    
T  26290810 acatatttttctttgtaaaaatatgattgtcaatgtagttatcaaccaaattgatgttcaaataaca 26290744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 43658693 - 43658605
Alignment:
Q  16 ttgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||| ||||| ||||||| |||||||| |||||||||||||||  | ||||||||| | |||||||| |||||| ||||||||||||||    
T  43658693 ttgcattgatttttgtgctaatacatacttttctttgtaaaaaaatagttgtcaatatggttgtcaaccaaattaatgttcaaataaca 43658605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 12070935 - 12071025
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    |||||||||||| || ||| ||||||||  |||||||||||||||  |||||||| || | |||||||| || ||||||||||||||||||    
T  12070935 tattgctttgattttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataaca 12071025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33616542 - 33616611
Alignment:
Q  1 ctttatctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    |||| ||||||| |||||||||||| ||||| |||| ||||| |||||||||||||||| ||||||||||    
T  33616542 ctttctctctctctattgctttgatttttgtaccaacacatacttttctttgtaaaaatatggttgtcaa 33616611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 4319809 - 4319892
Alignment:
Q  29 tgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 112  Q
    |||| ||||||||| |||||||| ||||||  ||  |||| ||||| |||||||| |||| |||||||||||||||||||||||    
T  4319809 tgtgtcaatacataattttctttataaaaacatgactgtctatttaattgtcaagtaaatagatgttcaaataacactactcta 4319892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 45259279 - 45259216
Alignment:
Q  7 ctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    |||||| |||||||||||| ||||| |||| ||||| |||||||||||||||| || |||||||    
T  45259279 ctctctctattgctttgatttttgtaccaacacatacttttctttgtaaaaatatgtttgtcaa 45259216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 6336332 - 6336394
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||| ||| |||||| | |||||||||| ||||| |||||||||||||||| ||||||||||    
T  6336332 tctctctatcgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 6336394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 27490722 - 27490616
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||||||||||| ||||||  |||||||  |||||||||||||| | || ||||||    ||||||||   |||| ||||||||||||||||    
T  27490722 tctctctctattgctttgatttttgtgttaatacatcattttctttgtaaaattttgattgtcacaaaagttgtcatcaaaatggatgttcaaataacac 27490623  T
Q  106 tactcta 112  Q
     ||||||    
T  27490622 aactcta 27490616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 14328461 - 14328566
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| | |||||||||| || ||| ||||||||  ||||||| |||||||| |  ||||| || | |||||||| || | |||||||||||||||||    
T  14328461 tctctctctgttgctttgattttcgtgtcaatacatgattttcttagtaaaaatataattgtccatgtggttgtcaatcacaatgatgttcaaataacac 14328560  T
Q  106 tactct 111  Q
    | ||||    
T  14328561 tgctct 14328566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 18737857 - 18737800
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaat 71  Q
    ||||| |||||| |||||||||| ||||| |||||||| ||||||| |||||||||||    
T  18737857 tattgttttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaat 18737800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 40599270 - 40599208
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    |||||||||||||||||| | |||||||||  |||||||||| ||||||||||| || |||||||    
T  40599270 tctctctatattgctttggtttttgtgcca--acatatttttttttgtaaaaatatgattgtcaa 40599208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 40358049 - 40357973
Alignment:
Q  35 aatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||||||| |||||||||||||||| || ||||| ||||  |||||||  ||||||||||  |||||| ||||||||    
T  40358049 aatacataattttctttgtaaaaatatgattgtctatttgattgtcaaataaattgatgtgtaaataatactactct 40357973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 5032004 - 5032102
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||| |||| ||||||||||||||| || || || ||||||||||||||  | |||||||||| | ||||||| | ||||  | ||||||||||||||    
T  5032004 tctctctattactttgatatttgtgctaaaacttactttttctttgtaaatttatggttgtcaaataagttgtctatcaaaaggttgttcaaataacac 5032102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 18982951 - 18982996
Alignment:
Q  37 tacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaa 82  Q
    |||||| |||||||||||||||| |||||||| |||| ||||||||    
T  18982951 tacatacttttctttgtaaaaatatggttgtccatttggttgtcaa 18982996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 23690492 - 23690396
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 110  Q
    ||||| |||| | |||||| |||||| | |||| |||||||||||| ||||||||     ||||||| | ||||||| |||||||||||||| ||||    
T  23690492 tattgttttggtttttgtgtcaatacctcttttcctttgtaaaaatatggttgtcttaaaagttgtctatcaaattggtgttcaaataacacaactc 23690396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 36774618 - 36774682
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||||| |||||||||||| || || | |||| ||| |||||||| ||||||| ||||||||||    
T  36774618 tctctctctattgctttgattttagtactaatagatacttttctttataaaaatatggttgtcaa 36774682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 39309518 - 39309586
Alignment:
Q  35 aatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataac 103  Q
    |||| ||| |||||||||||||||| || || ||||| |  ||||||| ||||||||| ||||||||||    
T  39309518 aatatatacttttctttgtaaaaatatgattatcaatatgattgtcaaccaaattgattttcaaataac 39309586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 12577 - 12681
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  12577 tctctctctattactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataactc 12676  T
Q  106 tactc 110  Q
    |||||    
T  12677 tactc 12681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 22098335 - 22098439
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  22098335 tctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatgtggttgtccatttaattatcaagcaaattgatgttcaaataacac 22098434  T
Q  106 tactc 110  Q
    |||||    
T  22098435 tactc 22098439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 16690587 - 16690686
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactctag 113  Q
    |||||||||| | |||||||||| ||||| |||||||||||||||| ||||||||||| | |||||||| ||||||||| ||||||||||| | ||||||    
T  16690587 tattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatattcaaataacattgctctag 16690686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 32639125 - 32639226
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    |||||||||| ||||||| || |||| |||||||| ||||||||||||||||  | ||||| ||||  |||||| |||||| ||||||||||||||||||    
T  32639125 tctctatattactttgattttcgtgctaatacatacttttctttgtaaaaataagattgtctatttgattgtcatgcaaatagatgttcaaataacacta 32639224  T
Q  108 ct 109  Q
    ||    
T  32639225 ct 32639226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 38493706 - 38493803
Alignment:
Q  8 tctctatattgctttgatattt-gtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||||||||| ||| ||||||| ||||| |||||||||| ||||| ||| ||||||| | |||||||| |||||||||||||||||||||    
T  38493706 tctctctattgctttgattttttgtgccaacacatacttttctttgttaaaatatgggtgtcaatgtggttgtcaaccaaattgatgttcaaataaca 38493803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 9168156 - 9168061
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||||||| | |||||||||| ||||| |||||||||||||| | || |||||||| | |||||||| |||||||||||||||||||||    
T  9168156 tctctctattgctttggtttttgtgccaacacatacttttctttgtaaaa-tatgattgtcaatatggttgtcaaccaaattgatgttcaaataaca 9168061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 27947316 - 27947367
Alignment:
Q  190 atacatgccgtttgtttttgaaattctcgtctttgcattatcatttcatctc 241  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27947316 atacatgccgtttgtttttgaaattctcgtcttcgcattatcatttcatctc 27947367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 38293350 - 38293245
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatat--ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataac 103  Q
    ||||||| |||| ||||||| |||||||||||  ||||  |||||||||||||||  || ||||| |||| |||||||||||||| ||||||||||||||    
T  38293350 tctctctctattactttgat-tttgtgccaatgtatatacttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataac 38293252  T
Q  104 actactc 110  Q
    |||||||    
T  38293251 actactc 38293245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 884529 - 884619
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||| |||||||||| ||||| ||||| |||||||||| ||||||| ||| |  |||||||  ||||||||||||||||||||    
T  884529 tattgttttgatttttgtgccaacacatacttttcattgtaaaaatatggttgttaatatgattgtcaactaaattgatgttcaaataaca 884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 40364648 - 40364749
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| |||||||| ||  ||| |||||||| ||||||  ||||| || ||||  ||||||||||||| ||||||||||||||||    
T  40364648 tctctctctattactttgatttttgtgccgatgtatacttttctttctaaaaacatggttatctatttgattgtcaagcaaatagatgttcaaataacac 40364747  T
Q  106 ta 107  Q
    ||    
T  40364748 ta 40364749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 14321918 - 14321850
Alignment:
Q  34 caatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 102  Q
    ||||||||| |||||||||||||| | |||||||| || | ||||||||  ||||||||||||||||||    
T  14321918 caatacataattttctttgtaaaagtatggttgtccatatggttgtcaattaaattgatgttcaaataa 14321850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 26686996 - 26687047
Alignment:
Q  44 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 95  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||| |||||    
T  26686996 ttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26687047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 26956727 - 26956778
Alignment:
Q  44 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 95  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||| |||||    
T  26956727 ttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26956778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 34940751 - 34940809
Alignment:
Q  44 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 102  Q
    |||||||| ||||||| || |||||||| | |||||||| |||||||||||||||||||    
T  34940751 ttttctttataaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataa 34940809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 40829496 - 40829598
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 107  Q
    ||||| |||| |||| || || |||| |||||||| |||||||| | ||||| | ||||||||||| |||||||  |||| | |||||||||||||| ||    
T  40829496 tctctctattactttaattttcgtgctaatacatacttttctttatgaaaatttagttgtcaatttggttgtcacacaaagtaatgttcaaataacatta 40829595  T
Q  108 ctc 110  Q
    |||    
T  40829596 ctc 40829598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 4088531 - 4088628
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 111  Q
    |||||||||| | || |||| ||||||||  ||||||||||||||| || ||||||  |  ||||||||  |||| |||||||||||||||| |||||    
T  4088531 tattgctttggttttcgtgctaatacatacatttctttgtaaaaatatgattgtcacataggttgtcaaaaaaatagatgttcaaataacacaactct 4088628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 6940140 - 6940042
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttc-tttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||| |||||||||||| || ||||||| || || ||||| ||||||||  | |||||||||| | ||||||| | ||||| | ||||||||||||||    
T  6940140 tctctctattgctttgattttcgtgccaaaacctacttttcctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaataacac 6940042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 6758780 - 6758683
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatg-tggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||||||| | || ||| ||||||||  ||||||||| |||||   |||||||| || | |||||||| || ||||||||||||||||||    
T  6758780 tctctctattgctttggttttcgtgtcaatacatgattttctttgaaaaaaaaatggttgtccatgtggttgtcaatcatattgatgttcaaataaca 6758683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 13461844 - 13461889
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttcttt 51  Q
    ||||||||| ||||||||||||||||| |||||| || ||||||||    
T  13461844 tctctctattttgctttgatatttgtgacaatacctacttttcttt 13461889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 19844300 - 19844240
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 68  Q
    ||||| |||||||||| | | ||||||||||| | ||||||||||||||| | ||||||||    
T  19844300 tctctctattgctttggtttgtgtgccaatacctctttttctttgtaaaattatggttgtc 19844240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 29463075 - 29463123
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgta 54  Q
    ||||||| |||||||||||| |||||||||||||  || ||||||||||    
T  29463075 tctctctctattgctttgatttttgtgccaatactcatatttctttgta 29463123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 41175696 - 41175593
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 106  Q
    ||||| |||||||||||| || |||| |||||  | ||||||||||||||  | |||||||||  | ||||||||| ||||| | |||||||||||||||    
T  41175696 tctctctattgctttgatcttcgtgcaaatacccactttttctttgtaaat-tatggttgtcacataagttgtcaaccaaatggttgttcaaataacact 41175598  T
Q  107 actct 111  Q
     ||||    
T  41175597 cctct 41175593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 35822966 - 35822868
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||  | |||||||| |||||||||||||||||||||    
T  35822966 tctctctctattgctttgatttttgtgccaatacatatttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaataaca 35822868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 44496780 - 44496699
Alignment:
Q  20 tttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 101  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||    
T  44496780 tttgatatttgtgccaatacataattttctttgtaaaaatatggttgtccatttaattgtcaaacaaattgatgttcaaata 44496699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 31398204 - 31398308
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| ||||||| || |||||||||||||||||||||||||||||   ||||||| |||| |||||||| |||||  |||||||||||||||    
T  31398204 tctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaaacaaataaatgttcaaataacac 31398303  T
Q  106 tactc 110  Q
    |||||    
T  31398304 tactc 31398308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 41590503 - 41590415
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 102  Q
    |||| ||||||| |||||||||||||||||||||| |||||||||  |||||||| |||| |||||||||||||| |||||||||||||    
T  41590503 tattactttgatttttgtgccaatacatatttttccttgtaaaaacatggttgtctatttggttgtcaagcaaatagatgttcaaataa 41590415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 48145604 - 48145697
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||            |||||||||||||||||||||||||||    
T  48145604 tctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatatggttg------------tcaagcaaattgatgttcaaataacac 48145691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 40854646 - 40854582
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| ||||||||||    
T  40854646 tctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtcaa 40854582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 26018120 - 26018226
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 105  Q
    ||||||| |||| |||| || ||| | | |||||||| |||||||| ||||||| || ||||| ||||| ||||||||||||| || |||||||||| ||    
T  26018120 tctctctctattactttaatttttatacaaatacatacttttctttataaaaatatgattgtctatttaattgtcaagcaaatagacgttcaaataaaac 26018219  T
Q  106 tactcta 112  Q
    |||||||    
T  26018220 tactcta 26018226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 42598197 - 42598135
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaa 70  Q
    ||||| |||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  42598197 tctctctattacttagatatttgtgccaatacataattttctttataaaaatgtggttgtcaa 42598135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 41590066 - 41589977
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 106  Q
    |||| ||||||| |||||||||||||||||||||| || ||||||| || ||||| |||| |||||||| |||||  ||||||||||||||||    
T  41590066 tattactttgatttttgtgccaatacatatttttccttataaaaatatgattgtctattt-gttgtcaaacaaat--atgttcaaataacact 41589977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 36352574 - 36352477
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttag-ttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||||||||| || ||| ||||| ||  |||||||||||||||  |||||||| || ||| ||||||| || ||||||||||||||||||    
T  36352574 tctctctattgctttgattttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgtagtttgtcaatcacattgatgttcaaataaca 36352477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 41430141 - 41430045
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||||||| | || ||| ||||| ||  |||||||||||||||  |||||||| || | |||||||| || ||||||||||||||||||    
T  41430141 tctctctattgctttggttttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataaca 41430045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 42584884 - 42584980
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| ||||||||||||  | ||| ||||| ||  |||||||||||||||  |||||||| || | |||||||| || ||||||||||||||||||    
T  42584884 tctctctattgctttgattctcgtgtcaatagatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataaca 42584980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 34507197 - 34507099
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||||| |||||||||||| || ||| ||||||||  |||| ||| ||||||  | |||||| || | |||||||| || ||||||||||||||||||    
T  34507197 tctctctctattgctttgattttcgtgtcaatacatgattttttttataaaaagatagttgtccatgtggttgtcaatcacattgatgttcaaataaca 34507099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 41458679 - 41458781
Alignment:
Q  10 tctatattgctttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactac 108  Q
    ||||||||| |||||| ||||||| ||||| || ||||||||| ||||  | |||||||||  | ||||||||| ||||| | ||||||||||||||| |    
T  41458679 tctatattgttttgatttttgtgcaaatacctactttttctttataaat-tatggttgtcatgtaagttgtcaaccaaatggttgttcaaataacactcc 41458777  T
Q  109 tcta 112  Q
    ||||    
T  41458778 tcta 41458781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 2008823 - 2008762
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 68  Q
    ||||||| |||||||||||||||||||||| ||| ||  ||||||||| | ||||||||||||    
T  2008823 tctctctctattgctttgatatttgtgccactacctaaatttctttgt-ataatgtggttgtc 2008762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 44651184 - 44651126
Alignment:
Q  43 tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 101  Q
    ||||| ||||||||||| | ||| ||||| ||||||||||  |||||||||||||||||    
T  44651184 tttttttttgtaaaaatatagttatcaatatagttgtcaatgaaattgatgttcaaata 44651126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 47012553 - 47012495
Alignment:
Q  14 tattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatt 72  Q
    ||||| |||||| ||||| |||| | ||| |||||||||||||||| ||||||||||||    
T  47012553 tattgttttgatttttgtaccaacatatacttttctttgtaaaaatatggttgtcaatt 47012495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 4292507 - 4292560
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaat 59  Q
    ||||||| |||||||||||| ||||| ||||||  || ||||||||||||||||    
T  4292507 tctctctctattgctttgatttttgtaccaatatttaattttctttgtaaaaat 4292560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 46829560 - 46829653
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacata-tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaat 100  Q
    ||||| |||||||||||| || ||||||| || || ||||||||||||||  | |||||||||| | ||||||| | ||||| | |||||||||    
T  46829560 tctctctattgctttgattttcgtgccaaaacctactttttctttgtaaatttatggttgtcaaataagttgtctatcaaatggttgttcaaat 46829653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 35207582 - 35207642
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 68  Q
    ||||| ||||||||||||||||||| |||||| |  |||| ||||||||| | ||||||||    
T  35207582 tctctctattgctttgatatttgtgtcaatacttcattttatttgtaaaattttggttgtc 35207642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 46260056 - 46259979
Alignment:
Q  33 ccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 112  Q
    ||||||||||||||||||||||||||  ||||| || ||||  || ||||||  || ||| || ||||||||||||||||    
T  46260056 ccaatacatatttttctttgtaaaaacatggttatctatttgattctcaagc--atagatcttgaaataacactactcta 46259979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 1226 - 1322
Alignment:
Q  8 tctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 104  Q
    ||||| |||||||||| | |||||||||||| ||| |||||||||||||||| || |||||||| | |||||||| |||| ||||||||||||||||    
T  1226 tctctctattgctttggtttttgtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataaca 1322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 7139 - 7247
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtcaatttag-------ttgtcaagcaaattgatgttcaa 98  Q
    ||||||| |||| ||||||||||| || |||| |||| ||||||||||  ||||||||||||||||||||       |||||||||||||||||||||||    
T  7139 tctctctctattactttgatatttatgtcaatgcatacttttctttgt--aaatgtggttgtcaatttagttgtcatttgtcaagcaaattgatgttcaa 7236  T
Q  99 ataacactact 109  Q
    |||||||||||    
T  7237 ataacactact 7247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 94873 - 94811
Alignment:
Q  6 tctctctatattgctttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtc 68  Q
    ||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||| | ||||||    
T  94873 tctctctctattactttgatttttgtgctaatacatatttttctttgtaaaaatatagttgtc 94811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University