View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18038_high_18 (Length: 233)
Name: NF18038_high_18
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18038_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27782295 - 27782076
Alignment:
| Q |
1 |
ttaatgattttgaatgatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttttagttaaaatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27782295 |
ttaatgattttgaatgatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttttagttaaagtatat |
27782196 |
T |
|
| Q |
101 |
catcatgaattattgagcaatttccttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgtttga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27782195 |
catcatgaattattgagcaattcgcttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgtttga |
27782096 |
T |
|
| Q |
201 |
gtgaaactaaactagtatta |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27782095 |
gtgaaactaaactagtatta |
27782076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27777666 - 27777874
Alignment:
| Q |
1 |
ttaatgattttgaatgatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttttagttaaaatatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27777666 |
ttaatgattttgaatgatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttctagttaaaatat-- |
27777763 |
T |
|
| Q |
101 |
catcatgaattattgagcaatttccttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgtttga |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27777764 |
catcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttccatcttttacatttgtcttaatcttcttgttttgtttga |
27777863 |
T |
|
| Q |
201 |
gtgaaactaaa |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
27777864 |
gtgaaactaaa |
27777874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 38226888 - 38226776
Alignment:
| Q |
98 |
tatcatcatgaattattgagcaatttccttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgtt |
197 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38226888 |
tatcatcatgaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaattttgtt |
38226789 |
T |
|
| Q |
198 |
tgagtgaaactaa |
210 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
38226788 |
tgagttaaactaa |
38226776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 27781319 - 27781439
Alignment:
| Q |
1 |
ttaatgattttgaatgatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttttagttaaaatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |||| ||||| || ||||| |
|
|
| T |
27781319 |
ttaatgattttgaatgatattatgaattttttatgggatggatacccttgatgttgtcatgtaatttgcg--------aattttttta----aagtatat |
27781406 |
T |
|
| Q |
101 |
catcatgaattattgagcaatttccttacaaga |
133 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
27781407 |
catcatgaattattgagcaatttgcttacaaga |
27781439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 17700232 - 17700130
Alignment:
| Q |
109 |
attattgagcaatttccttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgtttgagtgaaact |
208 |
Q |
| |
|
|||||||| || ||| || ||| |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||| ||||| || |
|
|
| T |
17700232 |
attattgaacagtttgctgacacgatatatataaattttagattatcaatttccaccttttgtggttgtcttaatcttctaattttgtttgtgtgaatct |
17700133 |
T |
|
| Q |
209 |
aaa |
211 |
Q |
| |
|
||| |
|
|
| T |
17700132 |
aaa |
17700130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 21899021 - 21898914
Alignment:
| Q |
97 |
atatcatcatgaattattgagcaatttccttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgt |
196 |
Q |
| |
|
||||||| ||| |||||||| || ||| || ||| ||| |||||||| ||| ||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
21899021 |
atatcattatggattattgaacagtttgctgacacgatttatataaattttggtt-atcaatttccaccttttgtgtttgtcttaatcttctaattttgt |
21898923 |
T |
|
| Q |
197 |
ttgagtgaa |
205 |
Q |
| |
|
||| ||||| |
|
|
| T |
21898922 |
ttgtgtgaa |
21898914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 17663772 - 17663843
Alignment:
| Q |
133 |
atatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgtttgagtga |
204 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
17663772 |
atatatataaattttagattttcaatttccaccttttgtgtttgtcttaatcttctaattttgtttgtgtga |
17663843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 22663506 - 22663446
Alignment:
| Q |
145 |
tttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgtttgagtgaa |
205 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
22663506 |
tttaggttatccatttccaccttttgtgtttgtgttaatcttctaattttgtttgtgtgaa |
22663446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 35250132 - 35249931
Alignment:
| Q |
1 |
ttaatgattttgaatgatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaataacaattcttttagttaaaatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| ||||| || | |||||||||||||| |
|
|
| T |
35250132 |
ttaatgattttgaatgatattatggtttttgtgtgggatgaatacccttgatgttatcatgtaattttccttaattggaagttgtttagttaaaatat-- |
35250035 |
T |
|
| Q |
101 |
catcatgaattattgagcaatttccttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgtttga |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
35250034 |
catcatgaattattgagcaatttgcttacaacatatatatagagtttagattatcaattattaccttttacatttgtcttagtcttctaattttgtttga |
35249935 |
T |
|
| Q |
201 |
gtga |
204 |
Q |
| |
|
|||| |
|
|
| T |
35249934 |
gtga |
35249931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University