View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18038_high_19 (Length: 218)
Name: NF18038_high_19
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18038_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 31706382 - 31706537
Alignment:
| Q |
49 |
tatgatattgcaaggaaaaattaagttatatattgttatagcttactcnnnnnnnnnnnngtaatggttcctgcaacatgtctgcttttcattttcagca |
148 |
Q |
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| T |
31706382 |
tatgatattgcaaggaaaaattaagttatatattgttatagcttactctttttcttttttgtaatggttcctgcaacatgtctgcttttcattttcagca |
31706481 |
T |
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| Q |
149 |
tcacctgaaatgaatgaaagcatttgatgaatggactaaccaactatatttcaatt |
204 |
Q |
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| T |
31706482 |
tcacctgaaatgaatgcaagcatttgatgaatggactaaccaactatatttcaatt |
31706537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 31706334 - 31706363
Alignment:
| Q |
17 |
aatatctggtaaaaatatcatgtttataat |
46 |
Q |
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| T |
31706334 |
aatatctggtaaaaatatcatgtttataat |
31706363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 38269593 - 38269548
Alignment:
| Q |
115 |
gttcctgcaacatgtctgcttttcattttcagcatcacctgaaatg |
160 |
Q |
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| T |
38269593 |
gttcctgcaacatgtttgctcttcattttcagcattacctgaaatg |
38269548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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