View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18038_high_7 (Length: 387)

Name: NF18038_high_7
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18038_high_7
NF18038_high_7
[»] chr8 (23 HSPs)
chr8 (1-377)||(8299973-8300349)
chr8 (1-377)||(7924556-7924932)
chr8 (1-367)||(41664962-41665329)
chr8 (1-377)||(32266732-32267108)
chr8 (1-377)||(9922771-9923147)
chr8 (86-369)||(13396566-13396849)
chr8 (192-377)||(172273-172458)
chr8 (1-336)||(13879081-13879416)
chr8 (2-336)||(25090598-25090932)
chr8 (1-138)||(20824708-20824845)
chr8 (5-138)||(17699889-17700022)
chr8 (1-84)||(172633-172716)
chr8 (1-138)||(43270861-43270998)
chr8 (1-138)||(42177146-42177280)
chr8 (265-309)||(12134566-12134610)
chr8 (253-304)||(28993075-28993126)
chr8 (239-305)||(17659073-17659139)
chr8 (239-309)||(23680400-23680470)
chr8 (253-334)||(2170555-2170636)
chr8 (275-316)||(13200296-13200337)
chr8 (253-338)||(20824505-20824590)
chr8 (289-338)||(42177471-42177520)
chr8 (264-304)||(25193332-25193372)
[»] chr1 (14 HSPs)
chr1 (1-377)||(35541219-35541595)
chr1 (1-377)||(6050773-6051149)
chr1 (7-377)||(11908705-11909075)
chr1 (1-336)||(47622671-47623006)
chr1 (9-138)||(43388774-43388903)
chr1 (110-330)||(2491429-2491649)
chr1 (329-377)||(51052650-51052698)
chr1 (253-304)||(22191627-22191678)
chr1 (254-304)||(3073993-3074043)
chr1 (239-304)||(21405081-21405146)
chr1 (239-308)||(30110757-30110826)
chr1 (239-306)||(17708220-17708287)
chr1 (264-309)||(47106538-47106583)
chr1 (264-304)||(52691715-52691755)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-377)||(105437-105813)
[»] chr7 (22 HSPs)
chr7 (1-377)||(4937722-4938098)
chr7 (1-377)||(11276842-11277222)
chr7 (1-374)||(47877156-47877529)
chr7 (1-377)||(29968144-29968520)
chr7 (1-377)||(17720805-17721181)
chr7 (1-374)||(235032-235404)
chr7 (161-366)||(37919725-37919930)
chr7 (1-138)||(31423011-31423148)
chr7 (1-335)||(37254970-37255304)
chr7 (239-306)||(34231940-34232007)
chr7 (242-333)||(36363738-36363829)
chr7 (239-304)||(17055772-17055837)
chr7 (275-338)||(25619674-25619737)
chr7 (239-309)||(4077513-4077583)
chr7 (254-304)||(22819564-22819614)
chr7 (239-309)||(27218952-27219022)
chr7 (264-298)||(27854299-27854333)
chr7 (266-304)||(28173835-28173873)
chr7 (275-337)||(31422814-31422876)
chr7 (275-309)||(45943089-45943123)
chr7 (264-304)||(11338990-11339030)
chr7 (266-302)||(27941353-27941389)
[»] chr4 (27 HSPs)
chr4 (1-377)||(23642185-23642561)
chr4 (1-369)||(47418982-47419350)
chr4 (1-369)||(19755445-19755813)
chr4 (1-369)||(19783993-19784361)
chr4 (1-374)||(15740394-15740766)
chr4 (1-374)||(1828134-1828507)
chr4 (197-377)||(47685685-47685865)
chr4 (1-336)||(54482753-54483088)
chr4 (1-335)||(48312307-48312640)
chr4 (2-336)||(2821629-2821966)
chr4 (1-97)||(23647843-23647939)
chr4 (1-336)||(5789686-5790021)
chr4 (1-138)||(55725300-55725437)
chr4 (1-333)||(11586792-11587124)
chr4 (1-147)||(19735329-19735475)
chr4 (1-177)||(46146046-46146223)
chr4 (254-304)||(4640526-4640576)
chr4 (264-309)||(20395834-20395879)
chr4 (266-309)||(29553599-29553642)
chr4 (239-306)||(42778479-42778546)
chr4 (266-333)||(46145889-46145956)
chr4 (206-305)||(48242619-48242718)
chr4 (266-309)||(49926125-49926168)
chr4 (239-306)||(53486785-53486852)
chr4 (347-377)||(13270831-13270861)
chr4 (266-304)||(23657638-23657676)
chr4 (263-304)||(46543222-46543263)
[»] chr3 (29 HSPs)
chr3 (1-377)||(2364447-2364823)
chr3 (4-369)||(10323168-10323533)
chr3 (1-377)||(19919823-19920199)
chr3 (1-374)||(34332409-34332782)
chr3 (211-377)||(7312946-7313112)
chr3 (2-336)||(48569634-48569968)
chr3 (113-374)||(40930245-40930495)
chr3 (1-333)||(962757-963089)
chr3 (1-148)||(16179346-16179493)
chr3 (247-361)||(7032492-7032606)
chr3 (18-304)||(17097488-17097773)
chr3 (5-138)||(12341853-12341986)
chr3 (1-147)||(15312981-15313128)
chr3 (1-333)||(3141066-3141397)
chr3 (1-138)||(19891086-19891223)
chr3 (4-145)||(20531648-20531788)
chr3 (239-302)||(31547616-31547679)
chr3 (267-309)||(26010285-26010327)
chr3 (239-309)||(26846105-26846175)
chr3 (239-309)||(47537506-47537576)
chr3 (239-304)||(44888147-44888212)
chr3 (253-305)||(2756084-2756136)
chr3 (264-304)||(9509997-9510037)
chr3 (264-304)||(9517972-9518012)
chr3 (275-335)||(19890890-19890950)
chr3 (239-309)||(15279803-15279873)
chr3 (266-304)||(31675173-31675211)
chr3 (266-304)||(31921209-31921247)
chr3 (266-302)||(27924925-27924961)
[»] chr5 (25 HSPs)
chr5 (1-377)||(42513890-42514266)
chr5 (1-377)||(12825369-12825745)
chr5 (1-377)||(30731908-30732284)
chr5 (1-377)||(27116767-27117131)
chr5 (1-377)||(23238554-23238929)
chr5 (1-377)||(31641681-31642057)
chr5 (1-374)||(35983385-35983758)
chr5 (1-363)||(28535269-28535631)
chr5 (1-374)||(42928304-42928677)
chr5 (1-336)||(27795694-27796030)
chr5 (1-138)||(25857018-25857155)
chr5 (1-138)||(8299776-8299913)
chr5 (5-138)||(10777193-10777326)
chr5 (1-333)||(33169872-33170204)
chr5 (253-333)||(24408142-24408222)
chr5 (1-63)||(27165544-27165606)
chr5 (35-333)||(18089392-18089687)
chr5 (239-309)||(20208551-20208621)
chr5 (189-333)||(27165712-27165856)
chr5 (266-304)||(476456-476494)
chr5 (266-303)||(380145-380182)
chr5 (253-338)||(8300028-8300113)
chr5 (266-307)||(11574553-11574594)
chr5 (266-307)||(22095109-22095150)
chr5 (253-338)||(25857270-25857355)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-377)||(3422-3798)
[»] chr6 (33 HSPs)
chr6 (1-324)||(24767023-24767346)
chr6 (141-374)||(2553810-2554043)
chr6 (171-374)||(21168372-21168574)
chr6 (1-336)||(14372585-14372920)
chr6 (1-108)||(2554045-2554152)
chr6 (76-337)||(15958482-15958743)
chr6 (1-138)||(17605928-17606065)
chr6 (1-138)||(20882627-20882764)
chr6 (5-334)||(10576848-10577176)
chr6 (1-304)||(33185678-33185981)
chr6 (5-138)||(21629705-21629838)
chr6 (19-138)||(17573268-17573387)
chr6 (1-165)||(13938101-13938265)
chr6 (253-333)||(13937914-13937994)
chr6 (254-338)||(20882880-20882964)
chr6 (264-304)||(26513967-26514007)
chr6 (239-309)||(649898-649968)
chr6 (264-309)||(18051306-18051351)
chr6 (239-306)||(9199084-9199151)
chr6 (290-337)||(11462617-11462664)
chr6 (250-328)||(5041737-5041815)
chr6 (1-71)||(18682168-18682238)
chr6 (274-328)||(18682401-18682455)
chr6 (275-309)||(25318092-25318126)
chr6 (275-309)||(26205586-26205620)
chr6 (254-304)||(29055763-29055813)
chr6 (264-309)||(333532-333577)
chr6 (266-307)||(5085885-5085926)
chr6 (264-309)||(17079048-17079093)
chr6 (253-338)||(17573501-17573586)
chr6 (254-307)||(23065894-23065947)
chr6 (239-305)||(11060694-11060757)
chr6 (264-304)||(25350466-25350506)
[»] chr2 (18 HSPs)
chr2 (1-336)||(28252931-28253266)
chr2 (193-363)||(41207200-41207370)
chr2 (1-334)||(12645749-12646082)
chr2 (76-336)||(40176879-40177139)
chr2 (1-138)||(14440155-14440290)
chr2 (2-102)||(33515802-33515902)
chr2 (254-309)||(36804150-36804205)
chr2 (264-304)||(18844490-18844530)
chr2 (254-309)||(36804365-36804420)
chr2 (275-334)||(38604247-38604306)
chr2 (275-309)||(22052865-22052899)
chr2 (265-315)||(44547706-44547756)
chr2 (264-301)||(12808007-12808044)
chr2 (253-334)||(14439959-14440040)
chr2 (264-304)||(16315632-16315672)
chr2 (264-304)||(18489051-18489091)
chr2 (264-332)||(31093468-31093536)
chr2 (253-309)||(33276209-33276265)
[»] scaffold1350 (1 HSPs)
scaffold1350 (5-90)||(1-86)
[»] scaffold0179 (2 HSPs)
scaffold0179 (239-309)||(7766-7836)
scaffold0179 (239-309)||(12700-12770)
[»] scaffold0112 (1 HSPs)
scaffold0112 (239-309)||(15482-15552)
[»] scaffold0007 (1 HSPs)
scaffold0007 (264-309)||(182367-182412)
[»] scaffold0555 (1 HSPs)
scaffold0555 (266-304)||(7911-7949)
[»] scaffold0043 (1 HSPs)
scaffold0043 (266-304)||(34468-34506)


Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 8300349 - 8299973
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8300349 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagat 8300250  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300249 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 8300150  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300149 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 8300050  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300049 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 8299973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 7924932 - 7924556
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||| ||    
T  7924932 ttgttcttcgtggtggagggagattgtgaggattagagatgggatacgtgagggtggagagggatggtttgggtcttgtgttacgaggagagtgggacat 7924833  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  7924832 ggggcacatactgattttgggcgtgattgttggtgtggagatgtccctctttgtgtccggtttatgcgcctttttgacttgactgttcacaaatcaatct 7924733  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7924732 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 7924633  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7924632 tagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 7924556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 41664962 - 41665329
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||| ||||||| | | |||||||||||||| |||||||||    
T  41664962 ttgttcttcgtggtggatggagatagtgaggattagagatgggatatgtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagat 41665061  T
Q  101 ggggcagatactgatttt-tggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatc 199  Q
    || ||||| ||||||||| ||||||||| |||||||  ||||||||||| | |||| |||||||||||||||||||||||||  |||| ||| ||||||     
T  41665062 ggtgcagacactgattttttggcgtgatcgttggtgcagagatgttcctttgtgtgaccggtttaggcgcctttttgacttgaatgttaacagatcaatt 41665161  T
Q  200 tcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagt 299  Q
    |||||||||||||||||| || |||||||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  41665162 tcagttaggaatatgttcttgttgggggtggatgtgggtggggaggtgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagt 41665261  T
Q  300 gtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaat 367  Q
    |||||| ||| ||||||||||||||||| ||||||||||||  ||||||||| || ||||||||||||    
T  41665262 gtagggttttattactaacagtttctttacaggaatcagtgacagacagatgactttggttacctaat 41665329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 32267108 - 32266732
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||  |||||||||    
T  32267108 ttgttcgtcgtggtggagggagatagtaaggattagagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggaaggtgggagat 32267009  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || |||||||||||||||||  |||||||||| ||||||||||| || ||||  |||||   ||| ||||||||||||  |||||||||||||||||    
T  32267008 ggtgcggatactgatttttggcggtattgttggtgcggagatgttccactgtgtgctcggttagagcgtctttttgacttgagtgttcacaaatcaatct 32266909  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||| ||  | ||| || | |||||||||||||| |||||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||    
T  32266908 ccgttagaaactttttcttgttcggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtg 32266809  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  32266808 tagggctttattgctaacagtttctttgcaggaatcagtgtcagacagatggctttgggtacctaatcatgatgatg 32266732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 9923147 - 9922771
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||     
T  9923147 ttgttcttcatggtggagggagatagtgaggattagagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagac 9923048  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||||| || ||||||||||| |||||||||||||||||||||||  | ||||   ||||||| ||||||| ||||||| ||||  ||||| ||||||    
T  9923047 ggtgcagagacagatttttggcgggattgttggtgtggagatgttccattgtgtgaatggtttagtcgcctttatgacttgactgtgaacaaaccaatct 9922948  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | |||||||| |||||| || ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||     
T  9922947 ctgttaggaacatgttcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtc 9922848  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||| |||||||||||||| |||||||||||||||  ||| |||||| | |||||||| | ||| |||||||    
T  9922847 tagggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatgatg 9922771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 86 - 369
Target Start/End: Complemental strand, 13396849 - 13396566
Alignment:
Q  86 aggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctg 185  Q
    ||||| ||||||||||| ||||| | |||||||||||||||| ||||||| ||||||||||| || |||| |||||||||||||||||||||||||  ||    
T  13396849 aggagggtgggagatggtgcagacattgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatg 13396750  T
Q  186 ttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggagga 285  Q
    || |||||||||| |||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||    
T  13396749 ttaacaaatcaatttcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggagga 13396650  T
Q  286 gttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 369  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  13396649 gttggtagaggagtgtagggttttattactaacaatttctttgcaggaatcagtgacagacagatggctttggttacctaatca 13396566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 192 - 377
Target Start/End: Complemental strand, 172458 - 172273
Alignment:
Q  192 aatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggt 291  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  172458 aatcagtctcagttaggaatatgttcctgctgagggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcctgggaggagaagttggt 172359  T
Q  292 agaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  172358 agaggagtgtagggctttgttactaatagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatgatg 172273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 13879081 - 13879416
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| || | |||||||||||||||||| |||||||| ||||| ||||||| |  ||||||||||||||| ||||| |||    
T  13879081 ttgttcttcgtggtggagggagatagtcaagattagagatgggataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggat 13879180  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    |  || ||||||||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||| |||| ||||||  || |  | |||||||||     
T  13879181 gaagctgatactgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagctatcgataaatcaatca 13879280  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | || ||||| |||||| || | |||||||| |  || ||||  |||| |  ||||||||| ||||| ||||  ||||||||||| ||||||||||||||    
T  13879281 cggtgaggaacatgttcttgttcggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggacttggtagaggagtg 13879380  T
Q  301 tagggctttgttactaacagtttctttgcaggaatc 336  Q
    ||||||||| ||||||||||| ||||||||||||||    
T  13879381 tagggctttattactaacagtctctttgcaggaatc 13879416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 2 - 336
Target Start/End: Complemental strand, 25090932 - 25090598
Alignment:
Q  2 tgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 101  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||  |||| ||||||  |  ||||||||||||||| ||||| ||||    
T  25090932 tgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtggaaagggttggtttacggattgtgttaggaggagggtgggggatg 25090833  T
Q  102 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 201  Q
    | |||||||||||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||| |||||||||||  |     | ||||||||| |    
T  25090832 gagcagatactgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgactttttgacttaaccaccaataaatcaatcac 25090733  T
Q  202 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 301  Q
     || ||||| |||||| || |||||||||| |  || ||||  |||| |  ||||||||| || || | ||  ||||||||| | |||||||||||||||    
T  25090732 ggtgaggaacatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccgtttattggtgtgggaggagaaattggtagaggagtgt 25090633  T
Q  302 agggctttgttactaacagtttctttgcaggaatc 336  Q
    |||||||| ||||||||||| ||||||||||||||    
T  25090632 agggctttattactaacagtctctttgcaggaatc 25090598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 20824845 - 20824708
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| |||    
T  20824845 ttgttctttgtggtggagggagattgtgaggattagagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggat 20824746  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    || || ||||| ||||||||||||||||||||||||||    
T  20824745 ggagctgataccgatttttggcgtgattgttggtgtgg 20824708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 17700022 - 17699889
Alignment:
Q  5 tcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 104  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||    ||||||||||||||| ||||| ||||| |    
T  17700022 tcttcgcggtggagggagatagttaggattagagatgggataggtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggag 17699923  T
Q  105 cagatactgatttttggcgtgattgttggtgtgg 138  Q
    | ||||||||||||||||| ||||||||||||||    
T  17699922 ccgatactgatttttggcgagattgttggtgtgg 17699889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 172633 - 172716
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttag 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  172633 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttag 172716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 43270998 - 43270861
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| |||||||    ||||||||||||||| || || |||    
T  43270998 ttgttcttcgtggtggagggagatagttaggattagagatgggataggcgagggtggggagggctggtttgcaggttgtgttaggaggagggtaggggat 43270899  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    || || ||||| ||||||||||  || |||||||||||    
T  43270898 ggagccgataccgatttttggccagactgttggtgtgg 43270861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 42177146 - 42177280
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||   ||  ||||||| |  ||||||||||||||| ||||| |||    
T  42177146 ttgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtgg---ggattggtttgcgggttgtgttaggaggagggtgggggat 42177242  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    ||||| || |  ||||||||||| ||||||||||||||    
T  42177243 ggggccgaaatcgatttttggcgagattgttggtgtgg 42177280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 12134610 - 12134566
Alignment:
Q  265 gttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  12134610 gttgtgggcgtgggaggaggacttggtagaggagtgtagggcttt 12134566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 28993075 - 28993126
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | ||||||||    
T  28993075 gtggcgtcggcggttgtggacttgggaggaggagttgttagggaagtgtagg 28993126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 17659139 - 17659073
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 305  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | |||||||||||||||    
T  17659139 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtaggg 17659073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 23680470 - 23680400
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| || |||| |  || ||||||||| |||||||||||||  | |||||||||||||||||||    
T  23680470 ggggaggcgtggaagtggaggagggggttgtgggtttgggaggaggaggagttagaggagtgtagggcttt 23680400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 2170636 - 2170555
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 334  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||||||||| |||||| |||||    
T  2170636 gtggcgtcgtcgtttatgggtatgggaggaggaattgctagtagagtgtagggatttattactaacagtctctttgtaggaa 2170555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 13200337 - 13200296
Alignment:
Q  275 tgggaggaggagttggtagaggagtgtagggctttgttacta 316  Q
    |||||||||||||||||||||||||||| || ||| ||||||    
T  13200337 tgggaggaggagttggtagaggagtgtatggatttattacta 13200296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 20824590 - 20824505
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 338  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||| |||||  |||||||||||||||    
T  20824590 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtagggatttattactgacagtcactttgcaggaatcag 20824505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 42177471 - 42177520
Alignment:
Q  289 ggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 338  Q
    |||||| |||||||||| ||| ||||||| ||| ||||||||||||||||    
T  42177471 ggtagaagagtgtagggatttattactaatagtctctttgcaggaatcag 42177520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 25193372 - 25193332
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    ||||||||||  |||||||||||||||| ||||||||||||    
T  25193372 ggttgtgggcgcgggaggaggagttggtggaggagtgtagg 25193332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 35541595 - 35541219
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35541595 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagat 35541496  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35541495 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 35541396  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35541395 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 35541296  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35541295 tagggctttgttactaacagtttttttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 35541219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 6051149 - 6050773
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  6051149 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagat 6051050  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6051049 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatct 6050950  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6050949 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 6050850  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6050849 tagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 6050773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 377
Target Start/End: Original strand, 11908705 - 11909075
Alignment:
Q  7 ttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggca 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| | | |||||||||||||| ||||||||||| |||    
T  11908705 ttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgca 11908804  T
Q  107 gatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagtta 206  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11908805 gatactgatttttgacgtgattgttggtgtggagatgttcctttgtgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagtta 11908904  T
Q  207 ggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 306  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11908905 ggaatatgttcatgatgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 11909004  T
Q  307 tttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11909005 tttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 11909075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 47622671 - 47623006
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||||   |||| ||| ||||| ||||||  |  ||||||||||||||| ||||| |||    
T  47622671 ttgttcttcttggtggagagagatagtgaggattagagatgggataaacgaggatggggagggttggttttcggattgtgttaggaggagggtgggggat 47622770  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||  | ||||||||||||||||| |||||||||||||| ||||||||  || |||  || ||||| || || | | | ||| | ||  |||||  ||||     
T  47622771 ggttccgatactgatttttggcgggattgttggtgtggtgatgttccgtttcgtgagcgctttagacggctatataatttggccgtcaacaaagtaatca 47622870  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    |  ||| || ||||||  || |||||||||| || || || |||| || |  ||||||||| ||||| ||||| |||||||||||  |||||||||||||    
T  47622871 cgattatgactatgtttttgttgggggtggaggttggtggtgaggtgtggtagtggcgtcgtcggttatgggcgtgggaggaggacctggtagaggagtg 47622970  T
Q  301 tagggctttgttactaacagtttctttgcaggaatc 336  Q
    || |||||| ||||| |||| || ||||||||||||    
T  47622971 taaggctttattactgacagcttttttgcaggaatc 47623006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 43388903 - 43388774
Alignment:
Q  9 cgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggcaga 108  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||    
T  43388903 cgtggtggagggagattgtgaggattagagatgggataggtgatggtggggagggctggtttacaagttgtgttaggaggagggtgggggatggagctga 43388804  T
Q  109 tactgatttttggcgtgattgttggtgtgg 138  Q
    | ||||||||||||| ||||||||||||||    
T  43388803 tgctgatttttggcgagattgttggtgtgg 43388774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 330
Target Start/End: Complemental strand, 2491649 - 2491429
Alignment:
Q  110 actgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttagga 209  Q
    ||||| || |||||||||||||||||||||||||||||  ||||||| || ||||| ||  ||||||  ||| | ||| |||||    || | ||||||     
T  2491649 actgacttctggcgtgattgttggtgtggagatgttccgttttgtgtgcgatttagacggttttttgttttgacagttaacaaagttgtcacggttaggt 2491550  T
Q  210 atatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||| | |||| ||||| |  || |||| ||||| |  ||||||||| || ||||||||||||||||| ||||||||||||||||||||||   |    
T  2491549 atatgttccagttgggtgtggaggctggtgggggggcgtggcagtggcgtcgtcgtttgtgggcttgggaggaagagttggtagaggagtgtagggtact 2491450  T
Q  310 gttactaacagtttctttgca 330  Q
     ||||| |||||| |||||||    
T  2491449 attacttacagttactttgca 2491429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 51052698 - 51052650
Alignment:
Q  329 caggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51052698 caggaatcagtgatagacagatggctctggttacctaatcatgatgatg 51052650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 22191627 - 22191678
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    ||||||| ||||||||||||| ||||||||||||||||||| ||||||||||    
T  22191627 gtggcgtaggcggttgtgggcatgggaggaggagttggtaggggagtgtagg 22191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 3074043 - 3073993
Alignment:
Q  254 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||| ||||||||||||| ||||||||||||||| ||| ||||||||||    
T  3074043 tggcgtaggcggttgtgggcctgggaggaggagttgttaggggagtgtagg 3073993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 21405146 - 21405081
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||| |  ||||||| ||||||||||||| || |||||||||||| ||| ||||||||||    
T  21405146 ggggaggcgtggcagtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 21405081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 30110757 - 30110826
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctt 308  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||||    
T  30110757 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctt 30110826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 17708287 - 17708220
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 306  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||    
T  17708287 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 17708220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 47106538 - 47106583
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||| ||||||||||||||||||  | |||||||||||||||||||    
T  47106538 ggttatgggcttgggaggaggaggagttagaggagtgtagggcttt 47106583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 52691755 - 52691715
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||| ||||| ||||||||||||||||| ||||||||||||    
T  52691755 ggttatgggcgtgggaggaggagttggtggaggagtgtagg 52691715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 105437 - 105813
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  105437 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagat 105536  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  105537 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatct 105636  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  105637 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 105736  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  105737 tagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 105813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 4937722 - 4938098
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  4937722 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagat 4937821  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4937822 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatct 4937921  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4937922 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 4938021  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4938022 tagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 4938098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 11276842 - 11277222
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||    
T  11276842 ttgttcgtcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagat 11276941  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgc----ctttttgacttgtctgttcacaaatca 196  Q
    || |||||||| ||||||||| ||||| ||||||| ||||||||||| || |||| ||||||| ||||     ||||||||||||  |||  ||||||||    
T  11276942 ggtgcagataccgatttttggtgtgatcgttggtgcggagatgttccactgtgtgcccggtttgggcgtgcgtctttttgacttgaatgtagacaaatca 11277041  T
Q  197 atctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagagg 296  Q
    ||||||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  11277042 atctcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagagg 11277141  T
Q  297 agtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||||||| || |||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||    
T  11277142 agtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatgatg 11277222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 47877529 - 47877156
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||| | | |||||||||| ||| ||||||||     
T  47877529 ttgttcttcgtggtggagggagatagtgaggattagagatgggataggcgagggtggagatggatggtttgggacgtgtgttaggatgagggtgggagac 47877430  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||| | || ||||||||||||||| ||||||| ||||||||||| || || | ||| ||||| ||||||| ||||||| ||||| ||||||||||||    
T  47877429 ggtgcataaacagatttttggcgtgatcgttggtgcggagatgttccactgtgcgaccgttttagtcgcctttatgacttgactgttaacaaatcaatct 47877330  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||| || |||||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  47877329 cagttaggaatatgttcttgttgggggtggacgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtg 47877230  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 374  Q
    | ||| ||| |||||||||||||| |||||||||||||||  ||||||||| || |||||||||||||| ||||    
T  47877229 tggggttttattactaacagtttccttgcaggaatcagtgacagacagatgactttggttacctaatcaggatg 47877156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 29968520 - 29968144
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||  |||||||||    
T  29968520 ttgttcgtcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagagggatgatttgggtcttgtgttaggaggaaggtgggagat 29968421  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || ||||| |||||||||||  |||||||||| |||||||||||  | ||||  |||||| || | ||||||||||||  |||||||||||||||||    
T  29968420 ggtgcggataccgatttttggcggaattgttggtgcggagatgttccattgtgtgctcggtttgggagtctttttgacttgagtgttcacaaatcaatct 29968321  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||| ||  | ||| || |||||||||||||||| |||||||||||| |||||||| || |||| |||||||| |||||||| ||||||||||||||    
T  29968320 ccgttagaaactttttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttatgggcttgagaggaggaattggtagaggagtg 29968221  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||| || |||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||    
T  29968220 tagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatgatg 29968144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 17721181 - 17720805
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||     
T  17721181 ttgttcttcatggtggagggagatagtgaggattagagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagac 17721082  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||||| || ||||||||| | ||||||||||||||||||||| |  | ||||  |||||||| ||||||| ||||||| ||||  |||||  |||||    
T  17721081 ggtgcagagacagatttttggtgggattgttggtgtggagatgtttcattgtgtgaacggtttagtcgcctttatgacttgactgtgaacaaactaatct 17720982  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | |||||||| ||| || || ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||     
T  17720981 ctgttaggaacatgatcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtt 17720882  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    || |||||| |||||||||||||| |||||||||||||||  ||| |||||| | |||||||| | ||| |||||||    
T  17720881 tanggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatgatg 17720805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 235032 - 235404
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||| | | |||||||||||||| ||||||||     
T  235032 ttgttcttcgtggtggagggagatagtgaggattagagatgggataggcgagggtggagagggctgatttgggacgtgtgttaggaggagggtgggagac 235131  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
     |  || | || ||||||||||||||| ||||||| ||||||||||| || |||| ||| ||||| ||||||| ||||||| ||||| ||||||||||||    
T  235132 agtacaaaaacagatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccgttttagtcgcctttatgacttggctgttaacaaatcaatct 235231  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    |||||| |||||||||| || ||||| |||| ||||| |||||||||||| ||||||||| ||| |||||||||||||||||  ||||||||||||||||    
T  235232 cagttatgaatatgttcttgttgggg-tggacgtgggtggggaggcgttgcggtggcgtcagcgattgtgggcttgggaggaaaagttggtagaggagtg 235330  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 374  Q
    ||||| ||| |||||||||||||| || ||||||||||||  ||| ||||| || |||||||| ||||| ||||    
T  235331 tagggttttattactaacagtttccttacaggaatcagtgacagatagatgactttggttaccaaatcaggatg 235404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 161 - 366
Target Start/End: Complemental strand, 37919930 - 37919725
Alignment:
Q  161 tttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtc 260  Q
    |||||||||||||||||||||  |||| | |||||||| |||||||| ||||||||| || |||||||||||||||| |||| || |||| ||||||||     
T  37919930 tttaggcgcctttttgacttgaatgttaaaaaatcaatttcagttagaaatatgttcttgttgggggtggatgtgggtgggggggtgttgcggtggcgta 37919831  T
Q  261 ggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggtt 360  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||  | ||| |||||| || ||    
T  37919830 ggcggttgtgggcttgggaggagaagttggtagaggagtgtagagttttattactaacagtttctttgcaggaatcagtgacaaacatatggctttgatt 37919731  T
Q  361 acctaa 366  Q
    ||||||    
T  37919730 acctaa 37919725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 31423148 - 31423011
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||| |||||||| ||||||||||||| |  ||||||||||||||| ||||  |||    
T  31423148 ttgttcttcgtggttgagggagatagtcaggattagagatgggataggcgagggtggggagggatggtttgcgggttgtgttaggaggagggtggaggat 31423049  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    ||    || || ||||||||||| ||||||||||||||    
T  31423048 ggaattgaaacggatttttggcgagattgttggtgtgg 31423011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 37255304 - 37254970
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| ||||| ||||||||||| || ||||||||||||| |||||| |||||||  ||| | ||||||| |  ||||||||||||||| ||||| |||    
T  37255304 ttgttcatcgtgatggagggagatagtcaggattagagatgagataggcgagggtgaggagagttggtttgcgggttgtgttaggaggagggtgggggat 37255205  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || || || ||||||||||| ||||||||||| ||   |||||| || ||||  || |||||||| || | ||| ||  ||||  | |||  ||||     
T  37255204 ggagccgaaaccgatttttggcgagattgttggtgcggtagtgttccgctgtgtgagcgctttaggcggctatatgatttagctgtcaataaagtaatca 37255105  T
Q  201 cagttaggaatatgttcctgct-gggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagt 299  Q
    | || ||||| |||||| || | ||||||||| |  || |||| ||||| |  |||||| || ||||| ||||  ||||||||||| |||||||| ||||    
T  37255104 cggtgaggaacatgttcttgttggggggtggaggatggtgggg-ggcgtggcagtggcgccgtcggttatgggtgtgggaggaggacttggtagaagagt 37255006  T
Q  300 gtagggctttgttactaacagtttctttgcaggaat 335  Q
    |||||| ||| |||||||||   |||||||||||||    
T  37255005 gtagggatttattactaacaaactctttgcaggaat 37254970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 34232007 - 34231940
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 306  Q
    ||||||||||||| |||| || || |||||||||| ||||||||||||  | ||||||||||||||||    
T  34232007 ggggaggcgttgaagtggagtaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggc 34231940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 36363829 - 36363738
Alignment:
Q  242 gaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 333  Q
    ||||||| |||||||||||   | |||||||  |||||||| ||| || |||||||||||||||| || ||||| || ||||||||||||||    
T  36363829 gaggcgtggaggtggcgtcatagtttgtgggtgtgggaggaagagctgctagaggagtgtagggcattattacttactgtttctttgcagga 36363738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 17055837 - 17055772
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||| |  ||||||| ||||||||||||| || |||||||||||| ||| ||||||||||    
T  17055837 ggggaggcgtggcagtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 17055772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 25619737 - 25619674
Alignment:
Q  275 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 338  Q
    |||||||||||  ||||||| ||||||| || ||| ||||||||||  ||||||||||||||||    
T  25619737 tgggaggaggacctggtagaagagtgtaaggatttattactaacagactctttgcaggaatcag 25619674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 4077583 - 4077513
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| || |||| |  || ||||||||||||||||||| |||  | |||||||||||||||||||    
T  4077583 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtagggcttt 4077513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 22819564 - 22819614
Alignment:
Q  254 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||| || |||||||||| ||||||||||||||| ||| ||||||||||    
T  22819564 tggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtagg 22819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 27218952 - 27219022
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| |  ||||||| | || ||||||| |||||| |||||| ||||||||||||||||| ||||    
T  27218952 ggggaggcgtgggtgtggcgtagacgattgtgggtttgggaagaggagatggtagaggagtgtaggtcttt 27219022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 27854299 - 27854333
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggag 298  Q
    ||||||||||||||||||| |||||||||||||||    
T  27854299 ggttgtgggcttgggaggaagagttggtagaggag 27854333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 28173835 - 28173873
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  28173835 ttgtgggcgtgggaggaggagttggtagcggagtgtagg 28173873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 31422876 - 31422814
Alignment:
Q  275 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatca 337  Q
    |||||||| || |||||||||||||||| |  ||| ||||||||||  |||||||||||||||    
T  31422876 tgggaggatgacttggtagaggagtgtatgaatttattactaacagactctttgcaggaatca 31422814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 45943123 - 45943089
Alignment:
Q  275 tgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||||||||| |||||||||||||||||||    
T  45943123 tgggaggaggagttgctagaggagtgtagggcttt 45943089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 11339030 - 11338990
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||| |||||||||||  |||||||||||||||||    
T  11339030 ggttgtgggcgtgggaggaggaaatggtagaggagtgtagg 11338990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 27941353 - 27941389
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgta 302  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  27941353 ttgtgggcgtgggaggaggagttgttagaggagtgta 27941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 23642185 - 23642561
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  23642185 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagat 23642284  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23642285 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatct 23642384  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23642385 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 23642484  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23642485 tagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 23642561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 47419350 - 47418982
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  47419350 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagat 47419251  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| |||||||    
T  47419250 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttccgcgcctttttggcttgtctgttcacaattcaatct 47419151  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  47419150 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggaggtggtagaggagtg 47419051  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 369  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  47419050 tagggctttgttactaacaatttctttgcaggattcagtgttagatagatggctctggttacctaatca 47418982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 19755813 - 19755445
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |   |||||||||||||| |||||||||    
T  19755813 ttgttcttcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagat 19755714  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||||| || ||||||||||||||| ||||||| ||||||||||| || |||| |||||||||||||||||||||||||  |||| |||||||||| |    
T  19755713 ggtgcagacaccgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatgttaacaaatcaattt 19755614  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    || |||||||||||||| || |||||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  19755613 catttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtg 19755514  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 369  Q
    ||||| ||| ||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  19755513 tagggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatca 19755445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 19783993 - 19784361
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |   |||||||||||||| |||||||||    
T  19783993 ttgttcttcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagat 19784092  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||||| || ||||||||||||||| ||||||| ||||||||||| || |||| |||||||||||||||||||||||||  |||| |||||||||| |    
T  19784093 ggtgcagacaccgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatgttaacaaatcaattt 19784192  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    || |||||||||||||| || |||||||||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  19784193 catttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtg 19784292  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 369  Q
    ||||| ||| ||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  19784293 tagggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatca 19784361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 15740766 - 15740394
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||| ||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||    
T  15740766 ttgttcttcatggtggcgggagatagtgaggattaaagatgagataggtgagggtggagagggatggtttgggtcttgtgt-aggaggagggtgggagat 15740668  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || |||||||||||||||||||||||| ||||||| ||||||||||| || |||| ||||||| |||| ||||||||||||  |||||||||||||||||    
T  15740667 ggtgcagatactgatttttggcgtgatcgttggtgcggagatgttccactgtgtgcccggtttgggcgtctttttgacttgaatgttcacaaatcaatct 15740568  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||||||||| ||| || ||||||| || ||||| ||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  15740567 ctgttaggaatatattcttgttgggggtagacgtgggaggggaggcgttgcagtggcataggcggttgtgggcttgggaggaggagttggtagaggagtg 15740468  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 374  Q
    ||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  15740467 tagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcatgatg 15740394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 1828134 - 1828507
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||    
T  1828134 ttgttcttcttggtggcgggagatagtgaggattagagatgggataggtgagggtggtgagggatggtttgggtcttgtgttaggaggagggtgggagat 1828233  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||||| ||||| |||||||||||| ||||||| ||||||| ||| || |||| ||||||| |||| ||||||||||||  | |||||||||| ||||    
T  1828234 ggtgcagacactgacttttggcgtgatcgttggtgcggagatgctcccctgtgtgcccggtttgggcgtctttttgacttgagtattcacaaatctatct 1828333  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||||||||||||| || ||||||| || ||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  1828334 ctgttaggaatatgttcttgttgggggtagacgtgggaggggaggcgttgtggtggcataggcggttgtgggcttgggaggaggagttggtagaggagtg 1828433  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 374  Q
     |||||||| ||||||||||||||||||||||| ||||||   |||| |||||| |||||||||||||||||||    
T  1828434 gagggctttattactaacagtttctttgcaggattcagtgactgacaaatggctttggttacctaatcatgatg 1828507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 197 - 377
Target Start/End: Original strand, 47685685 - 47685865
Alignment:
Q  197 atctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagagg 296  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  47685685 atctcagttaggaatatgttcttgttgggggtggatgtgggcggggaggcattgaggtggcgtgggcggctgtgggcttgggaggaggagttggtagagg 47685784  T
Q  297 agtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  47685785 agtgtagggctttgttactaacagtttctttgcaggaatcggtgatagacagatggctttggttacctaatcatgatgatg 47685865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 54482753 - 54483088
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||| | ||||||| |  ||||||||||||||| ||||| |||    
T  54482753 ttgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtggagagagttggtttgtggattgtgttaggaggagggtgggggat 54482852  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || ||||| ||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||  |||| ||||||  |  |  | ||||||||      
T  54482853 ggagctgataccgatttttggcgagattgttggtgtggtagtgttcccttgtgtgagcgctttaggcatctttatgacttagccatcaataaatcaatta 54482952  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | || ||||| |||||| || |||||||||| |  || ||||  |||| |  ||||||||| ||||| ||||  ||||||||||| ||||||||||||||    
T  54482953 cggtgaggaacatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggatttggtagaggagtg 54483052  T
Q  301 tagggctttgttactaacagtttctttgcaggaatc 336  Q
    ||||| ||| ||||||||||| ||||||||||||||    
T  54483053 taggggtttattactaacagtctctttgcaggaatc 54483088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 48312640 - 48312307
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| || ||||||||||||| |||||| |||||||| ||||| ||||||| |  ||||||||||||||| ||||| |||    
T  48312640 ttgttcttcgtggtggagggagatagtcaggattagagatgagataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggat 48312541  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || ||||  ||||||||||| ||||||||||||||  |||||||  | ||||  || |||||||| |||| ||||||  |  |  | |||||||||     
T  48312540 ggagctgatatcgatttttggcgagattgttggtgtgg-tatgttccgttgtgtgagcgctttaggcgactttatgacttagccatcaataaatcaatca 48312442  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | || ||||| |||||| || |||||||||| |  || |||| ||||| |  ||||||||| ||||| | ||  || |||||||| ||||||||||||||    
T  48312441 cggtgaggaacatgttcttgttgggggtggaggatggtgggggggcgtggcagtggcgtcgccggttattggtgtgtgaggaggacttggtagaggagtg 48312342  T
Q  301 tagggctttgttactaacagtttctttgcaggaat 335  Q
    ||||||||| ||||||||||| | |||||||||||    
T  48312341 tagggctttattactaacagtctatttgcaggaat 48312307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 336
Target Start/End: Original strand, 2821629 - 2821966
Alignment:
Q  2 tgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 101  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| |||||||    ||||||||||||||| ||||| ||||    
T  2821629 tgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtggggagggttggtttgcagattgtgttaggaggagggtgggggatg 2821728  T
Q  102 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 201  Q
    | || ||||| ||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||| |||| ||||||  |  |  | ||| ||||| |    
T  2821729 gagctgataccgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagccatcaataaagcaatcac 2821828  T
Q  202 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggagg---agttggtagaggag 298  Q
     || ||||| |||||| || |||||||||| |  || ||||  |||| | |||||||||| || || ||||  ||||||||||   | ||||||||||||    
T  2821829 ggtaaggaacatgttcttgttgggggtggaggatggtgggggagcgtggtggtggcgtcgccgcttatgggtgtgggaggaggaccaattggtagaggag 2821928  T
Q  299 tgtagggctttgttactaacagtttctttgcaggaatc 336  Q
    |||||||||||  |||||||||| ||||||||||||||    
T  2821929 tgtagggctttaatactaacagtctctttgcaggaatc 2821966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 23647843 - 23647939
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtggga 97  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  23647843 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtggga 23647939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 5789686 - 5790021
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||| ||||||| |||| |||||||||||||||||| |||||||| ||||||||||||| ||| |||||||| ||||| ||| | |||    
T  5789686 ttgttcttcttggtggcgggagattgtgaagattagagatgggataggcgagggtggggagggatggtttgcgtcgtgtgttagtaggagggtgcgggat 5789785  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||  ||| |||||||||||||||||||||||||||| |||||||  | ||||| || ||||| ||||| | ||||||| ||||  ||||  |||||     
T  5789786 ggagccaatattgatttttggcgtgattgttggtgtggaaatgttccgttgtgtgtgcgttttagacgcctatatgacttggctgtcaacaagccaatca 5789885  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | || | ||| || |||    | || ||||| || || |||||||| | |  ||||||||  || |||| ||| |||||||| || ||||||||||||||    
T  5789886 cggtgatgaacatattcgacttaggtgtggaggttggtggggaggcatggcagtggcgtcatcgtttgtaggcgtgggaggaagatttggtagaggagtg 5789985  T
Q  301 tagggctttgttactaacagtttctttgcaggaatc 336  Q
    |||||   | ||||| |||||| ||||| |||||||    
T  5789986 tagggagcttttacttacagttactttgtaggaatc 5790021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 55725300 - 55725437
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||||||||| || | ||| |||||||||||||| |||||||| ||||| ||||||| |  ||||||||||| ||| |||||||||    
T  55725300 ttgttcttcttggtggagggagatagtcatgatcagagatgggataggcgagggtggggagggttggtttgcggattgtgttaggatgagggtgggagat 55725399  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    || ||    || ||||||||||| ||||||||||||||    
T  55725400 ggagccacaacagatttttggcgagattgttggtgtgg 55725437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 11586792 - 11587124
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| | ||| |||||   |  ||||||||||||||| |||   |||    
T  11586792 ttgttcttcttggtggagggagatagttaggattagagatgggataggtgagggtggggtgggctggttctcggattgtgttaggaggagggtgaaggat 11586891  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||  | || |||||||| |||||||| ||||||||||| ||||| ||  ||||||  || ||||| ||  | | |||| |   |||  | ||| |||||     
T  11586892 ggatccgaaactgatttctggcgtgactgttggtgtggtgatgtcccattttgtgagcgctttagacggttatatgacatagttgtcaataaagcaatcg 11586991  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | |||| || ||||||  || ||||||||||||| ||  ||||||||| |  |||||| || || || ||||  || |||||| |  |  ||||||| ||    
T  11586992 cggttatgactatgttattgttgggggtggatgttggtagggaggcgtggcagtggcgccgtcgtttatgggtgtgagaggagaacctattagaggaatg 11587091  T
Q  301 tagggctttgttactaacagtttctttgcagga 333  Q
    ||||||||| ||||| |||||||||||||||||    
T  11587092 tagggctttattactgacagtttctttgcagga 11587124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 19735329 - 19735475
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||| | ||||| || |||||  |||||| |||  ||||||||||    ||||||||     
T  19735329 ttgttcttcttggtggcgggagatagtgaggattagagatgggataagagagggcggagagggtaggtttgtgtcgggtgttaggagacaggtgggagac 19735428  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcc 147  Q
    || || || ||||| ||||||| |||||||||||||||| |||||||    
T  19735429 ggtgctgagactgacttttggcatgattgttggtgtggaaatgttcc 19735475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 46146223 - 46146046
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| || |||||| ||||||| |||||||||| |||||||||||| ||||| || || || |||||||  ||  ||||||||||    ||||||||     
T  46146223 ttgttcatcttggtggcgggagatagtgaggattatagatgggataggagagggcggagatggttggtttgcatcgggtgttaggagacaggtgggagac 46146124  T
Q  101 ggggcagatactgatttttggcgtga-ttgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttga 177  Q
    || || || ||||| ||||||||||| ||||||||||||| |||||||  ||||||| || ||||| || ||||||||    
T  46146123 ggtgctgagactgacttttggcgtgatttgttggtgtggaaatgttccgttttgtgtgcgatttagacggctttttga 46146046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 4640526 - 4640576
Alignment:
Q  254 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    ||||||||  |||||||||||||||||||||| ||| ||||||||||||||    
T  4640526 tggcgtcgaaggttgtgggcttgggaggaggacttgttagaggagtgtagg 4640576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 20395879 - 20395834
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  20395879 ggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 20395834  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 29553599 - 29553642
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||| ||||||||||||||| |||||||||||||| ||||    
T  29553599 ttgtgggcgtgggaggaggagttgttagaggagtgtaggacttt 29553642  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 42778546 - 42778479
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 306  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||    
T  42778546 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 42778479  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 46145956 - 46145889
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 333  Q
    ||||||| ||||||||| ||||||| ||||||||||||||   | ||||| |||||| ||||||||||    
T  46145956 ttgtgggtttgggaggaagagttggcagaggagtgtagggaactattacttacagttactttgcagga 46145889  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 48242718 - 48242619
Alignment:
Q  206 aggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 305  Q
    ||||| |||||| || |||| ||||| || ||||||||||||| |  |||||| |  || ||||||| ||||||||| || |||||||||| ||||||||    
T  48242718 aggaacatgttcttgttgggtgtggaggttggcggggaggcgtggcagtggcgacatcgtttgtgggtttgggaggaagaattggtagaggggtgtaggg 48242619  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 49926125 - 49926168
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||| ||||||||||||||| ||| |||||||||||||||    
T  49926125 ttgtgggcgtgggaggaggagttgttagtggagtgtagggcttt 49926168  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 53486785 - 53486852
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 306  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||    
T  53486785 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 53486852  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 377
Target Start/End: Original strand, 13270831 - 13270861
Alignment:
Q  347 agatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||||    
T  13270831 agatggctctggttacctaatcatgatgatg 13270861  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 23657676 - 23657638
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  23657676 ttgtgggcgtgggaggaggagttgttagaggagtgtagg 23657638  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 46543263 - 46543222
Alignment:
Q  263 cggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    ||||||||||| |||||||||||| ||||||| |||||||||    
T  46543263 cggttgtgggcgtgggaggaggagatggtagaagagtgtagg 46543222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 2364823 - 2364447
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  2364823 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagat 2364724  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2364723 ggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatct 2364624  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2364623 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 2364524  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364523 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 2364447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 4 - 369
Target Start/End: Original strand, 10323168 - 10323533
Alignment:
Q  4 ttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggg 103  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  10323168 ttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggg 10323267  T
Q  104 gcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||    
T  10323268 gcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttccgcgcctttttggcttgtctgttcacaattcaatctcag 10323367  T
Q  204 ttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtag 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10323368 ttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtag 10323467  T
Q  304 ggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 369  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  10323468 ggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctagttacctaatca 10323533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 19919823 - 19920199
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||| || |||||||||||||||| |||||||||    
T  19919823 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggaggtgagggttggtttcagacttgtgttaggaggagggtgggagat 19919922  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || |||||||||||||||||||||||||| |||||||||| || |||  | |||||||| |||  |||||||||||||||| ||||||||||||| ||||    
T  19919923 ggtgcagatactgatttttggcgtgattgctggtgtggagctgatccattgtgtgtccgatttccgcgcctttttgacttgactgttcacaaatctatct 19920022  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| || |||||||||||||||||||||||||||||||||||||    
T  19920023 cagttaggaatatgtttctgctgggggtggatgtgggcggggaggcattgaggtgtcgtaggaggttgtgggcttgggaggaggagttggtagaggagtg 19920122  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19920123 tagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 19920199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 34332409 - 34332782
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||| |||||||||    
T  34332409 ttgttcttcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagagggatggtttgggacgtgtgttaggaggagggtgggagat 34332508  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || |||||  | ||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||  ||||  |||||||||||    
T  34332509 ggtgcagactcagatttttggcgtgatcgttggtgtggaaatgttccactgtgtgtccggtttaggcgcctttttgacttgaatgttatcaaatcaatct 34332608  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||| || ||||||||||  |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34332609 cagttaggaatatgttcttgttgggggtggacatgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 34332708  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 374  Q
    ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  34332709 tagggttttattactaacagtttctttgcaggaatcagtgtcagacagatggctttggttacctaatcaggatg 34332782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 211 - 377
Target Start/End: Complemental strand, 7313112 - 7312946
Alignment:
Q  211 tatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7313112 tatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttg 7313013  T
Q  311 ttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7313012 ttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 7312946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 336
Target Start/End: Original strand, 48569634 - 48569968
Alignment:
Q  2 tgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 101  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| |  ||||||||||||||| ||||| ||||    
T  48569634 tgttcttcgtggtagagggagatagtcaggattagagatgggataggtgagggtggggagggttggtttgtggattgtgttaggaggagggtgggggatg 48569733  T
Q  102 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 201  Q
    | || ||||| ||||||||||  ||||||||||||||   |||||   | ||||  || |||| ||| |||| ||||||  | ||  | ||| ||||| |    
T  48569734 gagctgataccgatttttggcaagattgttggtgtggtagtgttctgttgtgtgagcgctttatgcgtctttatgacttagccgtcaataaagcaatcac 48569833  T
Q  202 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 301  Q
     || ||||| |||||| || ||||||| || |  || ||||  |||| |  ||||||||| || || ||||  ||||||||||| |||||||||||||||    
T  48569834 ggtaaggaacatgttcttgttgggggttgaggatggtgggggagcgtggcagtggcgtcgccgtttatgggtgtgggaggaggacttggtagaggagtgt 48569933  T
Q  302 agggctttgttactaacagtttctttgcaggaatc 336  Q
    ||||||||  |||||||||| ||||||||||||||    
T  48569934 agggctttactactaacagtctctttgcaggaatc 48569968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 113 - 374
Target Start/End: Original strand, 40930245 - 40930495
Alignment:
Q  113 gatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaata 212  Q
    |||||||||| |||||||||||| | | |||||||  | |||| ||| ||||| ||||||| ||||||| ||||  ||||||||||||| ||||||||||    
T  40930245 gatttttggcatgattgttggtgcgtatatgttccattgtgtgaccgttttagtcgcctttatgacttggctgtgaacaaatcaatctctgttaggaata 40930344  T
Q  213 tgttcctgctggggg-tggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgt 311  Q
    ||||| || |||||| |||||||||| |||||||||||| |||||            |||||||||||||| |||||||||||||||||||||| ||| |    
T  40930345 tgttcttgttggggggtggatgtgggtggggaggcgttgcggtgg------------tgggcttgggaggaagagttggtagaggagtgtagggttttat 40930432  T
Q  312 tactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 374  Q
    ||||||||||||||||||| |||||||||  | | |||||||| |||||||| ||||| ||||    
T  40930433 tactaacagtttctttgcaagaatcagtgacaaatagatggctttggttaccaaatcaggatg 40930495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 962757 - 963089
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| || |||||||||||||| ||||||||||| ||||||||||  ||||| ||  |||| |||||||  ||  ||||||||||    ||||||||     
T  962757 ttgttcatcttggtggagggagatagtgaggattagggatgggatagaagagggaggatagggttggtttgcatcaggtgttaggagacaggtgggagac 962856  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || || ||||| | |||||||||||||||||||||| |||||||  ||||||| || ||||| || |||||||| ||| | ||  |||||    ||     
T  962857 ggtgctgagactgactgttggcgtgattgttggtgtggaaatgttccgttttgtgtgcgatttagacggctttttgatttgacagtcaacaaagttgtca 962956  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    |  ||||||| ||||||| | ||||  |||| || || |||| ||||| |  ||||||||| || ||||||| ||||||||| || ||||||||||||||    
T  962957 cgattaggaacatgttccagttgggtttggaggttggtgggggggcgtggcagtggcgtcgccgcttgtgggtttgggaggaagaattggtagaggagtg 963056  T
Q  301 tagggctttgttactaacagtttctttgcagga 333  Q
    |||||  || ||||| |||||| ||||||||||    
T  963057 tagggaattattacttacagttactttgcagga 963089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 16179493 - 16179346
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||| ||| ||||||||| ||| |||||||| ||||| ||||| |||    
T  16179493 ttgttcttcttggtggcgggagattgtgaggattagagatgggataggcgagggtggggagagatggtttgtgtcgtgtgttagtaggagggtgggggat 16179394  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcct 148  Q
    ||  |  |||||||||||||||| ||| |||||| ||||  |||||||    
T  16179393 ggatccaatactgatttttggcgcgatagttggtatggaattgttcct 16179346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 361
Target Start/End: Complemental strand, 7032606 - 7032492
Alignment:
Q  247 gttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagac 346  Q
    |||| |||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| | ||||||||||| ||| ||||     
T  7032606 gttgcggtggcgtaggcgtttgtgggcttgggaggaagagttggtagaggagtttagggctttattactaacagttacattgcaggaatcggtgatagat 7032507  T
Q  347 agatggctctggtta 361  Q
    |||||||| ||||||    
T  7032506 agatggctttggtta 7032492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 17097488 - 17097773
Alignment:
Q  18 gggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggcagatactgattt 117  Q
    ||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||| ||| |||||||||||  | ||||| || || || |||||||||||    
T  17097488 gggagatagtgagaattagagatgggataggcgagggtggggaggggtggtttgtgtcgtgtgttaggagacgggtgggggacggagctgatactgattt 17097587  T
Q  118 ttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttc 217  Q
    |||||||||||||||||||||  |||||||  | ||||  || ||||| || || | ||| ||| ||||  |||||  | || | || ||||| ||||||    
T  17097588 ttggcgtgattgttggtgtggtaatgttccgttgtgtgagcgttttagacggctatatgatttggctgtcaacaaagtagtcacggtaaggaacatgttc 17097687  T
Q  218 ctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
     || ||||  |||| || ||| ||| ||||| |  |||||| || || ||||||||||| || || |||||||||||||||||||||    
T  17097688 ttgttgggtttggaggttggcaggg-ggcgtggtagtggcgccgtcgtttgtgggcttgagaagaagagttggtagaggagtgtagg 17097773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 12341853 - 12341986
Alignment:
Q  5 tcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 104  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||     |||||||| |||||| ||||| ||||| |    
T  12341853 tcttcgtggtggagggagattgttaggattagagatgggataggtgagggtggggagggctggtttacaggttgtgttaagaggagggtgggggatggag 12341952  T
Q  105 cagatactgatttttggcgtgattgttggtgtgg 138  Q
    | |||||  |||||||||| ||||||||||||||    
T  12341953 ctgataccaatttttggcgagattgttggtgtgg 12341986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 15313128 - 15312981
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggag-gagagtgggaga 99  Q
    ||||||||| || ||| || |||| |||||||||||||||| |||||| |||||||| ||||||||||||| ||| |||||||||||  || ||||| ||    
T  15313128 ttgttcttcttgatggcggaagatagtgaggattagagatgagataggcgagggtggggagggatggtttgcgtcgtgtgttaggagaaagggtggggga 15313029  T
Q  100 tggggcagatactgatttttggcgtgattgttggtgtggagatgttcc 147  Q
    ||| || ||||||||||||||| ||||| ||||||||||  |||||||    
T  15313028 tggagccgatactgatttttggtgtgatagttggtgtggtaatgttcc 15312981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 3141397 - 3141066
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| || |||||| ||||||| ||||||| ||||||||||||||| |||||  | ||||| |||||||  |   ||||||||||    ||||||||     
T  3141397 ttgttcatcttggtggcgggagatagtgaggactagagatgggataggagagggcagagagggttggtttgcattgggtgttaggagacaggtgggagac 3141298  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || || ||||| |||||||||||||||||||||||| |||||||  ||||||| || ||||| || || ||||| ||| | ||  |||||    ||     
T  3141297 ggtgctgagactgagttttggcgtgattgttggtgtggaaatgttccattttgtgtgcgatttagacggctctttgatttgacagtcaacaaagttgtca 3141198  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    |||||||||| ||||||| | ||||  |||| || || |||| |  || |  ||||||| | || ||||| | ||||||||| |||||||||||||||||    
T  3141197 cagttaggaacatgttccagttgggtttggaggttggtgggg-gatgtggcagtggcgttgccgcttgtgagtttgggaggaagagttggtagaggagtg 3141099  T
Q  301 tagggctttgttactaacagtttctttgcagga 333  Q
    |||||   | ||||| |||||| ||||||||||    
T  3141098 tagggaactattacttacagttactttgcagga 3141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 19891223 - 19891086
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||| | |||||||  || || |||||||    ||||||||||||||| ||||| |||    
T  19891223 ttgttcttcgtggtggagggagatagtcaggattagagatgggataagcgagggtgaggaaggttggtttgcaggttgtgttaggaggagggtgggggat 19891124  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    || || || |  ||||||| | | ||||||||||||||    
T  19891123 ggagccgaaatcgattttttgtgagattgttggtgtgg 19891086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 20531648 - 20531788
Alignment:
Q  4 ttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggg 103  Q
    |||||| |||||||||||||| ||||| |||||| ||||| |||| |    ||| ||||| | ||||| | | ||||| |||||||| ||||| || |||    
T  20531648 ttcttcttggtggagggagatagtgagaattagatatggg-tagggggaaatggtgaggggtagtttgcggcctgtgtcaggaggagggtgggggacggg 20531746  T
Q  104 gcagatactgatttttggcgtgattgttggtgtggagatgtt 145  Q
    || || ||| ||||||||||||| ||||||||||| ||||||    
T  20531747 gctgaaacttatttttggcgtgactgttggtgtggtgatgtt 20531788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 31547679 - 31547616
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgta 302  Q
    |||||||||| |  ||||||| ||||||||||||| ||||||||||||||| ||| ||||||||    
T  31547679 ggggaggcgtggcagtggcgtaggcggttgtgggcatgggaggaggagttgttaggggagtgta 31547616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 26010327 - 26010285
Alignment:
Q  267 tgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  26010327 tgtgggcttgggaggaggaattggtagaggagtgtaggacttt 26010285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 26846175 - 26846105
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| ||||||| |  || |||||||||| ||||||||||||  | |||||||||||||||||||    
T  26846175 ggggaggcgtggaggtgggggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 26846105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 47537576 - 47537506
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | |||||||||||||||||||    
T  47537576 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 47537506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 44888212 - 44888147
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||| |  ||||||| ||||||||||||| ||||||||||| ||| ||| ||||||||||    
T  44888212 ggggaggcgtggcagtggcgtaggcggttgtgggcatgggaggaggaattgttaggggagtgtagg 44888147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 2756136 - 2756084
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 305  Q
    ||||||||| || ||||||| ||||||||| ||||| ||||||||||||||||    
T  2756136 gtggcgtcgccgcttgtgggtttgggaggaagagtttgtagaggagtgtaggg 2756084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 9510037 - 9509997
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  9510037 ggttgtgggcatgggaggaggagttggtagcggagtgtagg 9509997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 9518012 - 9517972
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  9518012 ggttgtgggcatgggaggaggagttggtagcggagtgtagg 9517972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 19890950 - 19890890
Alignment:
Q  275 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaat 335  Q
    |||||||||||  ||||||| |||||| ||| ||| ||||||||||| |||||||||||||    
T  19890950 tgggaggaggacctggtagaagagtgtggggatttattactaacagtctctttgcaggaat 19890890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 15279873 - 15279803
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| || ||||||| |  | |||||||||||||| |||||| ||||||||| ||||||| ||||    
T  15279873 ggggaggcgtggatgtggcgtagaagattgtgggcttgggaagaggagatggtagaggcgtgtaggtcttt 15279803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 31675211 - 31675173
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31675211 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 31675173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 31921209 - 31921247
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31921209 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 31921247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 27924925 - 27924961
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgta 302  Q
    ||||||||||||||||||||| || ||||||||||||    
T  27924925 ttgtgggcttgggaggaggaggtgttagaggagtgta 27924961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 42514266 - 42513890
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  42514266 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagat 42514167  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42514166 ggggcagatactgatttctggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatct 42514067  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42514066 cagttaggaatatgttccttctgggggtggatgtggggggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 42513967  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42513966 tagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 42513890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 12825745 - 12825369
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| | | |||||||||||||| |||||||||    
T  12825745 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagat 12825646  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12825645 ggtgcagatactgatttttggcgtgattgttggagtggagatgttcctttgtgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatct 12825546  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  12825545 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggatgaggagttggtagaggagtg 12825446  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12825445 tagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 12825369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 30731908 - 30732284
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| | | |||||||||||||| |||||||||    
T  30731908 ttgttcttcatggtggagggagattgtgaggattagagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagat 30732007  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  30732008 ggtgcagatactgatttttggcgtgattgttggtgtggagatgttcctctgtgtgtccggtttagacgcctttttgacttgactgctcacaaatcaatct 30732107  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30732108 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 30732207  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30732208 tagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 30732284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 27116767 - 27117131
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||||||    
T  27116767 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggagggggatggtttgggtcttgtgttaggaggagggtgggagat 27116866  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || | ||||||||||||||||||||            ||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||| |||    
T  27116867 ggtgtagatactgatttttggcgtg------------gagatgttcctttgtgtgtccggtttaggcgcctttttgacttgtctgttcatcaatcagtct 27116954  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  27116955 cagttaggaatatgttcctgctgggggtggatgtgggcggagaggcgttgaggtggcgtaggcggttgtgggcctgggaggaggggttggtagaggagtg 27117054  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  27117055 tagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatgatg 27117131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 23238929 - 23238554
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||    
T  23238929 ttgttcgtcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagat 23238830  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||  | ||||| ||||||||||||||| ||||||| ||||||||||| || |||| ||||||| |||| ||||||||||||  ||| |||||||||||||    
T  23238829 ggtacggataccgatttttggcgtgatcgttggtgcggagatgttccactgtgtgcccggtttgggcgtctttttgacttgagtgtacacaaatcaatct 23238730  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||||||||||||| || |  |||||||| |||| |||||||||||| |||||||| || ||||||||||  |||||||||||||||||||||||||    
T  23238729 ccgttaggaatatgttcttg-ttagggtggatttgggtggggaggcgttgcggtggcgtaggaggttgtgggccagggaggaggagttggtagaggagtg 23238631  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||| || |||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||    
T  23238630 tagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatgatg 23238554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 31642057 - 31641681
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||     
T  31642057 ttgttcttcatggtggcgggagatagtgaggattagagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagac 31641958  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || |||||||| ||||||||||| ||||||||||||||| |||||||| | |||| ||||||||| ||||||| ||||||| ||||  ||||| ||||||    
T  31641957 ggtgcagatacagatttttggcgggattgttggtgtggaaatgttcctttgtgtgaccggtttagtcgcctttatgacttgactgtgaacaaaccaatct 31641858  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | |||||||| |||||| || |||||||||| || || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||     
T  31641857 ctgttaggaacatgttcttgatgggggtggaggtcggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtt 31641758  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||| |||||||||||||| |||||||||||||||  ||| |||||| | |||||||| | ||| |||||||    
T  31641757 tagggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatgatg 31641681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 35983385 - 35983758
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||  ||||||||||||||||| ||||||||     
T  35983385 ttgttcttcgtggtggagggagattgtgaggattagagatgggataggtgacggtggagagggttggtttggatcttgtgttaggaggagggtgggagac 35983484  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||||| || |||||||||||||||||| ||||||||||||||||| | |||| ||| ||||| ||||| | ||||||| ||||  ||||| ||||||    
T  35983485 ggtgcagaaacggatttttggcgtgattgtaggtgtggagatgttcctatgtgtgaccgttttagtcgcctatatgacttgactgtgaacaaaccaatct 35983584  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||||||||||||| || |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||     
T  35983585 ctgttaggaatatgttcttgttgggggtggatgagggtggggaggcgttgaggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtt 35983684  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 374  Q
    ||||||||| |||||||||||||| || ||||||||||||  ||| |||| ||| |||||||| ||||| ||||    
T  35983685 tagggctttattactaacagtttcattacaggaatcagtgacagatagatagctttggttaccaaatcaggatg 35983758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 28535269 - 28535631
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||     
T  28535269 ttgttcttcatggtggagggagatagtgaggattagagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagac 28535368  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || | ||| || ||||||||||| |||||||||||||||||||||||| | |||| ||| ||||| ||||||| ||||||| ||||  ||||  ||||||    
T  28535369 ggtgtagaaacagatttttggcgggattgttggtgtggagatgttcctttgtgtgaccgttttagtcgcctttatgacttgactgtgaacaatccaatct 28535468  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||||||||||||| || ||||||||||||| || ||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||||     
T  28535469 ctgttaggaatatgttcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggtggttgtgggcttgagaggaagagttggtagaggagtt 28535568  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacc 363  Q
    ||||||||| |||||||||||||| |||||||||||| ||  ||| |||||||| ||||||||    
T  28535569 tagggctttattactaacagtttcattgcaggaatcaatgacagatagatggctttggttacc 28535631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 42928677 - 42928304
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| ||||| ||||||| | | ||| |||||||||| ||||| ||     
T  42928677 ttgttcttcgtggtggaggcagatagtgagggttagagatgggataggtgagggtggagagggctggtttggggcgtgttttaggaggagggtgggtgac 42928578  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || || || ||||||| ||||||||||||||| || ||||||||    |||| ||| ||||| ||||| | ||||||| ||||| | |||||||||     
T  42928577 ggtgctgaaacagatttttagcgtgattgttggtgcggtgatgttccgaggtgtgaccgttttagtcgcctatatgacttggctgttaataaatcaatca 42928478  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||| || ||| || ||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||    
T  42928477 cagttaggaatatgttcttgttggaggcggatgtgggtggggaggcgttgcagtggcgtcggcggttgtgggcttgggaggaagagttggtagaggagtg 42928378  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 374  Q
    ||||| ||| ||||| || |||| ||| ||||||||||||  ||| |||||| | |||||||| ||||| ||||    
T  42928377 tagggttttattacttaccgtttttttacaggaatcagtgacagatagatggttgtggttaccaaatcaggatg 42928304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 27796030 - 27795694
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggatag-gtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggaga 99  Q
    ||||||||||||||||||||||   || | ||||||||||||||||| | |||||||| ||||| ||||||| |  ||||||||||||||| ||||| ||    
T  27796030 ttgttcttcgtggtggagggagtaagtcaagattagagatgggatagcgcgagggtggagagggttggtttgtggattgtgttaggaggagggtggggga 27795931  T
Q  100 tggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatc 199  Q
    ||| || ||||||||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||| |||| ||||||  || | || |||||||||    
T  27795930 tggagctgatactgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagctatccataaatcaatc 27795831  T
Q  200 tcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagt 299  Q
     | |  ||||| |||||| || | |||||||| |  || ||||  |||| |  ||||||||| || || ||||  ||||||||||| |||||||||||||    
T  27795830 acggcgaggaacatgttcttgttaggggtggaggatggtgggggagcgtggcagtggcgtcgccgattatgggtgtgggaggaggacttggtagaggagt 27795731  T
Q  300 gtagggctttgttactaacagtttctttgcaggaatc 336  Q
    |||||||||| |||||||||||||||||| |||||||    
T  27795730 gtagggctttattactaacagtttctttggaggaatc 27795694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 25857018 - 25857155
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||     ||||||||||||||| ||||| |||    
T  25857018 ttgttctttgtggtggagggagattgtgaggattagagatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggat 25857117  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    || || ||||| ||||||||||| ||||||||||||||    
T  25857118 ggagctgataccgatttttggcgcgattgttggtgtgg 25857155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 8299776 - 8299913
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||     ||||||||||||||| ||||| |||    
T  8299776 ttgttctttgtggtggagggagattgtgaggattaaagatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggat 8299875  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    || || ||||| ||||||||||| ||||||||||||||    
T  8299876 ggagctgataccgatttttggcgcgattgttggtgtgg 8299913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 10777326 - 10777193
Alignment:
Q  5 tcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 104  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||| |||||||    ||||||||||||||| ||||| ||||| |    
T  10777326 tcttcgtggtggagggagatagttaggattagagatgggatatgtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggag 10777227  T
Q  105 cagatactgatttttggcgtgattgttggtgtgg 138  Q
    | ||||||||||||||||| ||||||||||||||    
T  10777226 ccgatactgatttttggcgagattgttggtgtgg 10777193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 33170204 - 33169872
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| || |||||| ||||||| ||||||||||| ||||||||||  |||||  | ||||| |||||||  ||  ||||||||||    ||||||||     
T  33170204 ttgttcatcttggtggcgggagatagtgaggattagggatgggatagaagagggatgagagggttggtttgcatcaggtgttaggagacaggtgggagac 33170105  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || || ||||| |||||||||||||||||||||||| |||||||  ||||||| || ||||| || |||||||| ||| | ||  |||||    ||     
T  33170104 ggtgctgagactgacttttggcgtgattgttggtgtggaaatgttccgttttgtgtgcgatttagacggctttttgatttgacagtcaacaaagttgtca 33170005  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | |||||||| ||||||| | ||||  |||| || || |||| ||||| |  |||||| || || ||||||| ||||||||| |||||||||||||||||    
T  33170004 cggttaggaacatgttccagttgggtttggaggttggtgggggggcgtggcagtggcgacgccgcttgtgggtttgggaggacgagttggtagaggagtg 33169905  T
Q  301 tagggctttgttactaacagtttctttgcagga 333  Q
    |||||  || ||||| |||||| ||||||||||    
T  33169904 tagggaattattacttacagttactttgcagga 33169872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 24408222 - 24408142
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 333  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||||||||||   | ||||| |||||| ||||||||||    
T  24408222 gtggcgtcgtcgcttgtgggcttgggaggaagagttggtagaggagtgtagggaactattacttacagttactttgcagga 24408142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27165544 - 27165606
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgaggg 63  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||| |||||||| |||||    
T  27165544 ttgttcttcttggtggagggagataatgaggattagagatgggataggcgagggtggggaggg 27165606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 333
Target Start/End: Original strand, 18089392 - 18089687
Alignment:
Q  35 agagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 134  Q
    ||||||||| |||| |||||||| ||||| ||||||| ||| ||||||||| |    ||||| ||||| ||  |||||||||||||||||||||||| ||    
T  18089392 agagatgggttaggcgagggtgg-gaggggtggtttgtgtcgtgtgttaggcgtcaggtgggtgatggagcttatactgatttttggcgtgattgttagt 18089490  T
Q  135 gtggagatgttcctctttg-tgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatg 233  Q
    ||||  |||||  || ||| ||  || |||||||| |||| ||| ||||||||  | |||    || | |||||||||||||||||| ||||  || | |    
T  18089491 gtggtaatgtt--tcgttgttgatcgttttaggcggctttatgatttgtctgtcaataaagtggtcacggttaggaatatgttcctgatgggtttgaagg 18089588  T
Q  234 tgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 333  Q
    | || |||| ||| | |  ||| |  || ||||||||||||||||||||  ||||| ||||||||||||||| | | ||||| |||||| | ||||||||    
T  18089589 ttggagggg-ggcttggcagtgccaccgacggttgtgggcttgggaggaaaagttgatagaggagtgtagggatcttttacttacagttacattgcagga 18089687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 20208551 - 20208621
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| ||||||| |  || |||||||||| ||||||||||||  | |||||||||||||||||||    
T  20208551 ggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 20208621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 333
Target Start/End: Original strand, 27165712 - 27165856
Alignment:
Q  189 acaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagtt 288  Q
    ||||| ||||| | || ||||| |||||| |||||| | |||| || || ||||||| || |  ||| |||||  | |||||||||||| |||| |||||    
T  27165712 acaaagcaatcacggtaaggaacatgttcttgctggtgatggaggttggtggggaggggtggtagtgacgtcgttgtttgtgggcttggaaggaagagtt 27165811  T
Q  289 ggtagaggagtgtagggctttgttactaacagtttctttgcagga 333  Q
    ||||||| |||||||||  || ||||| | ||||| |||||||||    
T  27165812 ggtagagtagtgtagggaattattactcatagtttatttgcagga 27165856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 476494 - 476456
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  476494 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 476456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 380182 - 380145
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtag 303  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  380182 ttgtgggcgtgggaggaggagttggtcgaggagtgtag 380145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 8300028 - 8300113
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 338  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||| |||||  |||||||||||||||    
T  8300028 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtagggatttattactgacagtcactttgcaggaatcag 8300113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 11574553 - 11574594
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagggct 307  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  11574553 ttgtgggcgtgggaggaggagatgttagaggagtgtagggct 11574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 22095109 - 22095150
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagggct 307  Q
    |||||||| ||||||||||||||| ||||||||| |||||||    
T  22095109 ttgtgggcgtgggaggaggagttgttagaggagtttagggct 22095150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 25857270 - 25857355
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 338  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||| |||||  |||||||||||||||    
T  25857270 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtagggatttattactgacagtcactttgcaggaatcag 25857355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 3798 - 3422
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||| || ||||||||||| |||||||||    
T  3798 ttgttcgtcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagaggggtggtttgggtcctgcgttaggaggagggtgggagat 3699  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || || ||||| ||||||||||||||||||||||| ||||| ||||| || |||| ||||||| |||| ||||||||||||  ||| |||||||| ||||    
T  3698 ggtgcggataccgatttttggcgtgattgttggtgcggagacgttccactgtgtgcccggtttgggcgtctttttgacttgagtgtacacaaatctatct 3599  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||||||||||||| || |||||||||||||||| |||||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||    
T  3598 ccgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtg 3499  T
Q  301 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 377  Q
    ||||||||| ||||||||||||||||| ||||||||||||  |||||||||||| ||| ||||||| ||||||||||    
T  3498 tagggctttattactaacagtttctttacaggaatcagtgacagacagatggctttgggtacctaaccatgatgatg 3422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 24767023 - 24767346
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||| ||||||| | | |||||||||||||| ||||| ||     
T  24767023 ttgttcttcgtggtggagggagatagtgaggattagggatgggatatgtgagggtggagagggctggtttggggcgtgtgttaggaggagggtgggtgac 24767122  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||  | |  ||||||||||||||| ||||||| || |||||||| || |||| ||| ||||| ||||| | ||||||| ||||| |||||||||||     
T  24767123 ggtgctaaaatagatttttggcgtgatcgttggtgcggtgatgttccactgtgtgaccgttttagtcgcctatatgacttggctgttaacaaatcaatca 24767222  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    ||||||||||||||||| || |||| ||||| ||||| |||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  24767223 cagttaggaatatgttcttgttgggcgtggacgtgggtggggaggcgttgcggtggcgtcgacggttgtgggcttgggaggaagagttggtagaggagtg 24767322  T
Q  301 tagggctttgttactaacagtttc 324  Q
    ||||| | | ||||||||||||||    
T  24767323 tagggttgtattactaacagtttc 24767346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 141 - 374
Target Start/End: Complemental strand, 2554043 - 2553810
Alignment:
Q  141 atgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcgg 240  Q
    ||||||| || |||| ||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| || |||||||||| ||||| ||    
T  2554043 atgttccactatgtgcccgatttaggcgcctttttgacttgaatgttcacaaatcaatcttagttaggaatatgttcttgttgggggtggacgtgggtgg 2553944  T
Q  241 ggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtg 340  Q
    ||| |||||| |||||||| |||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2553943 ggaagcgttgcggtggcgtaggcggttgtgggcttgggagtagaagttggtaaaggagtgtagggctttattactaacagtttctttgcaggaatcagtg 2553844  T
Q  341 ttagacagatggctctggttacctaatcatgatg 374  Q
      |||||||||||| || ||||||||||||||||    
T  2553843 acagacagatggctttgattacctaatcatgatg 2553810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 171 - 374
Target Start/End: Complemental strand, 21168574 - 21168372
Alignment:
Q  171 tttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtg 270  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| || | ||| | || ||||| |||||||||||| |||||||| ||||||||||    
T  21168574 tttttgacttgaatgttcacaaatcaatctctgttaggaatatgttcttgttaggg-tagacgtgggaggggaggcgttgcggtggcgtaggcggttgtg 21168476  T
Q  271 ggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcat 370  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||    
T  21168475 ggcttgggaggaggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcat 21168376  T
Q  371 gatg 374  Q
    ||||    
T  21168375 gatg 21168372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 14372585 - 14372920
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||||||||| || ||||||||||| ||||||| ||||||||| ||||| ||||||  |  |||||| |||||||| ||||| |||    
T  14372585 ttgttcttcttggtggagggagatagtcaggattagagacgggatagatgagggtggggagggttggttttcgggttgtgtcaggaggagggtgggggat 14372684  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||  | ||||||||||||||||| ||||||||||||||  |||||||  || |||  |  ||||| ||  | | ||| ||| | ||  |||||  ||||     
T  14372685 ggttccgatactgatttttggcgggattgttggtgtggtaatgttccgtttcgtgagcactttagacggttatatgatttggccgtcaacaaagtaatca 14372784  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||| ||||||||  |  |||||||||| || || || ||||||| || ||||||||  ||||| ||||| ||||| |||||  | |||||||||||    
T  14372785 cggttagaaatatgtttttattgggggtggaggttggtggtgaggcgtggaagtggcgtcatcggttatgggcgtgggacgaggacctagtagaggagtg 14372884  T
Q  301 tagggctttgttactaacagtttctttgcaggaatc 336  Q
    ||||||||| ||||| ||||||||||||||||||||    
T  14372885 tagggctttattactgacagtttctttgcaggaatc 14372920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2554152 - 2554045
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||||    
T  2554152 ttgttcttcgtggtggagggagataatgagggttagagatgggataggtgagggtggagagggatggtttgggacttgtgttaggaggagggtgggagat 2554053  T
Q  101 ggggcaga 108  Q
    || |||||    
T  2554052 ggtgcaga 2554045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 76 - 337
Target Start/End: Original strand, 15958482 - 15958743
Alignment:
Q  76 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 175  Q
    ||||||||||||||| ||||| |||||  | || |||||||||||||||||||||||||||||  |||||||  ||||||  |  ||||| || || | |    
T  15958482 ttgtgttaggaggagggtgggggatggatccgaaactgatttttggcgtgattgttggtgtggtaatgttccgttttgtgagctctttagtcggctatat 15958581  T
Q  176 gacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggctt 275  Q
    || ||| ||||  |||||  |||| |||||||| |||||||| |||||| ||||||||| || |||||||||| |  || |||||| || || ||||| |    
T  15958582 gatttggctgtcaacaaagtaatcacagttaggcatatgttcttgctggaggtggatgttggtggggaggcgtggcagttgcgtcgtcgtttatgggcgt 15958681  T
Q  276 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatca 337  Q
    || ||||  | ||| ||||||| ||||||| ||| ||||| |||||||||||||||||||||    
T  15958682 ggtaggaaaacttgttagaggaatgtagggttttattactgacagtttctttgcaggaatca 15958743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17605928 - 17606065
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| |||    
T  17605928 ttgttcttctttgtggagggagattgtgaggattagagatgggataggtgagggtggggagggctggtttacaggttgtgttaggaggagggtgggggat 17606027  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    || || ||||| ||||||||||| ||||||||||||||    
T  17606028 ggagctgataccgatttttggcgagattgttggtgtgg 17606065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 20882627 - 20882764
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||| |||||||  | ||||||||||||||| ||||| |||    
T  20882627 ttgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtggggagggttggtttgcatgttgtgttaggaggagggtgggggat 20882726  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    || || || ||  |||||||||| ||||||||||||||    
T  20882727 ggagccgaaaccaatttttggcgagattgttggtgtgg 20882764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 334
Target Start/End: Original strand, 10576848 - 10577176
Alignment:
Q  5 tcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 104  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| |    
T  10576848 tcttcgtggtggagggagatagttaggattagagatgggataggtgagggtggggagggctggtttataggttgtgttaggaggagggtgggggatggag 10576947  T
Q  105 cagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagt 204  Q
    | ||||| ||||||||| | ||||||||||||||   ||||||  | ||||| || |||||||| |||| ||| ||  ||||  | |||   ||  ||||    
T  10576948 ctgataccgatttttggtgagattgttggtgtggtagtgttccgttgtgtgttcgttttaggcggctttatgatttaactgtcaataaagttattacagt 10577047  T
Q  205 taggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
      |||| |||||  ||||||||||||| |  |  |||| ||||| |  ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||    
T  10577048 gcggaacatgtttttgctgggggtggagggtgatgggg-ggcgtggcagtggcgtcgtcgtttatgggtatgggaggaggaattgctagtagagtgtagg 10577146  T
Q  305 gctttgttactaacagtttctttgcaggaa 334  Q
    | ||| ||||| ||||| ||||||||||||    
T  10577147 gatttattactgacagtctctttgcaggaa 10577176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 33185981 - 33185678
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| ||||||| |||||| ||||| || ||||||||| | || |  ||||| ||||| |||||||  |||| |||  ||||||| ||||| |||    
T  33185981 ttgttcttcttggtggatggagatagtgagaataagagatggggttggcggaggtggtgaggggtggtttgtatcttatgtctggaggagggtgggggat 33185882  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||| |  |||  || | | | || |||| ||||||| ||||  |||||  ||||     
T  33185881 ggggctgaaactgatttttggcgtgattgttggtgtggtgatgttcctttccgtgagcgctctcgtcgtctttatgacttgactgtcaacaaagtaatca 33185782  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | |||||||| ||| ||||| ||||   ||| |  || |||||||||| |  ||| ||||| || |||||| | |||||||| |||||||||||||||||    
T  33185781 cggttaggaacatgctcctgttgggttgggaggatggtggggaggcgtggcagtgacgtcgccgtttgtggacatgggaggaagagttggtagaggagtg 33185682  T
Q  301 tagg 304  Q
    ||||    
T  33185681 tagg 33185678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 21629705 - 21629838
Alignment:
Q  5 tcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 104  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| |    
T  21629705 tcttcgtggtggagggagattgttaggattagagatgggataagtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggag 21629804  T
Q  105 cagatactgatttttggcgtgattgttggtgtgg 138  Q
    | ||||  ||||||||||| ||||||||||||||    
T  21629805 ctgatatcgatttttggcgagattgttggtgtgg 21629838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 17573268 - 17573387
Alignment:
Q  19 ggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggcagatactgatttt 118  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||||| ||||||    
T  17573268 ggagattgtgaggattagagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttt 17573367  T
Q  119 tggcgtgattgttggtgtgg 138  Q
    ||||| ||||||||||||||    
T  17573368 tggcgcgattgttggtgtgg 17573387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 13938265 - 13938101
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggag-gagagtgggaga 99  Q
    |||||| || ||||||  |||||| ||||||||||||||||||||||| ||||| || ||||| |||||||  ||  |||||||||| ||| ||||||||    
T  13938265 ttgttcatcttggtggcaggagatagtgaggattagagatgggataggagagggaggagagggttggtttgcatcaggtgttaggagagag-gtgggaga 13938167  T
Q  100 tggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttag 165  Q
    ||| || || ||||| ||||| |||||||||||||||||| |||||||  ||||||| || |||||    
T  13938166 tggtgctgagactgacttttgtcgtgattgttggtgtggaaatgttccgttttgtgtgcgatttag 13938101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 13937994 - 13937914
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 333  Q
    ||||||||| || ||||||| ||||||||| ||||||||||||||||||||||  || ||||| |||||| ||||||||||    
T  13937994 gtggcgtcgccgcttgtgggtttgggaggaagagttggtagaggagtgtagggaattattacttacagttactttgcagga 13937914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 20882880 - 20882964
Alignment:
Q  254 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 338  Q
    |||||||| || || ||||| |||||||||||  ||||||| | |||||||| ||| ||||||||||| ||||||||||||||||    
T  20882880 tggcgtcgtcgtttatgggcgtgggaggaggacctggtagaagggtgtagggatttattactaacagtctctttgcaggaatcag 20882964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 26514007 - 26513967
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26514007 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 26513967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 649898 - 649968
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | |||||||||||||||||||    
T  649898 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 649968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 18051306 - 18051351
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  18051306 ggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 18051351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 9199084 - 9199151
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 306  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||    
T  9199084 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggagaagttagaggagtgtagggc 9199151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 11462664 - 11462617
Alignment:
Q  290 gtagaggagtgtagggctttgttactaacagtttctttgcaggaatca 337  Q
    ||||| |||||||||| ||| ||||||||||| |||||||||||||||    
T  11462664 gtagaagagtgtagggatttattactaacagtctctttgcaggaatca 11462617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 5041815 - 5041737
Alignment:
Q  250 gaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttg 328  Q
    ||||||||||||  | |||||||  |||||||| |||||| |||||||||||||||| ||  |||| ||| ||||||||    
T  5041815 gaggtggcgtcgtggtttgtgggtgtgggaggaagagttgttagaggagtgtagggcattactactgacaatttctttg 5041737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 18682168 - 18682238
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttg 71  Q
    ||||||||| |||||| ||||||| |||| |||||   |||| |||||||||||||  |||||||||||||    
T  18682168 ttgttcttcttggtggcgggagatagtgaagattaataatggtataggtgagggtgaggagggatggtttg 18682238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 18682401 - 18682455
Alignment:
Q  274 ttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttg 328  Q
    ||||||||| ||||||| |||||||||||||||| | ||||| |||||| |||||    
T  18682401 ttgggaggaagagttggcagaggagtgtagggctctattactcacagttactttg 18682455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 25318126 - 25318092
Alignment:
Q  275 tgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||||||||| |||||||||||||||||||    
T  25318126 tgggaggaggagttgctagaggagtgtagggcttt 25318092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 26205620 - 26205586
Alignment:
Q  275 tgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||||||||| |||||||||||||||||||    
T  26205620 tgggaggaggagttgctagaggagtgtagggcttt 26205586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 29055813 - 29055763
Alignment:
Q  254 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||| ||||||||||||  | ||||||||||||||||| ||||||||||    
T  29055813 tggcgtaggcggttgtgggtctaggaggaggagttggtaggggagtgtagg 29055763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 333532 - 333577
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| ||||| ||||||||| |||||||||||||| ||||    
T  333532 ggttgtgggcatgggatgaggagttgttagaggagtgtaggacttt 333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 5085885 - 5085926
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagggct 307  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  5085885 ttgtgggcgtgggaggaggagatgttagaggagtgtagggct 5085926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 17079048 - 17079093
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||||||||||||||||  | |||||||| ||||||||||    
T  17079048 ggttgtgggcttgggaggaggaggagttagaggagcgtagggcttt 17079093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 17573501 - 17573586
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 338  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||| |||||  |||||||||||||||    
T  17573501 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtagggatttattactgacagtcactttgcaggaatcag 17573586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 23065894 - 23065947
Alignment:
Q  254 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggct 307  Q
    ||||| || ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  23065894 tggcggcgtcggttgtgggcgtgggaggaggatttgctagaggagtgtaaggct 23065947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 11060694 - 11060757
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 305  Q
    |||||||||| || |||| |  || ||||||||||||||||||||||||   |||||||||||||||    
T  11060694 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggagt---tagaggagtgtaggg 11060757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 25350506 - 25350466
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||| ||||| ||||||||||||||||| ||||||||||||    
T  25350506 ggttatgggcgtgggaggaggagttggtggaggagtgtagg 25350466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 28253266 - 28252931
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||| ||||| ||||||  |  ||||||||||||||| ||||| |||    
T  28253266 ttgttcttcttggtggagggagatagtgaggattagagatgggatagacgagggtggggagggttggttttcggtttgtgttaggaggagggtgggggat 28253167  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    ||  | ||||||||||||||||| |||||| ||||||| |||||||   || |||  || ||||| || || | ||| ||| | ||  |||||  ||||     
T  28253166 ggttccgatactgatttttggcgggattgtcggtgtggtgatgttctgtttcgtgagcgctttagacggctatatgatttggccgtcaacaaagtaatca 28253067  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    | ||||||| ||||||  || |||||||||| || || || ||||||| |  ||||||||| ||||| ||||| |||||||| ||  | |||||||||||    
T  28253066 cggttaggactatgtttttgttgggggtggaggttggtggtgaggcgtggtagtggcgtcgtcggttatgggcatgggaggatgacctagtagaggagtg 28252967  T
Q  301 tagggctttgttactaacagtttctttgcaggaatc 336  Q
    ||||||||| ||||| ||||||| ||||||||||||    
T  28252966 tagggctttattactgacagtttttttgcaggaatc 28252931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 193 - 363
Target Start/End: Complemental strand, 41207370 - 41207200
Alignment:
Q  193 atcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggta 292  Q
    ||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||||   |||||||| ||||||||||| |||||||| |||||||||    
T  41207370 atcaatcacagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcaatggcgtcgtcggttgtgggcatgggaggaagagttggta 41207271  T
Q  293 gaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacc 363  Q
    ||||||||||||| ||| ||| | |||||||| |||||||||||||||  ||| |||||| | ||||||||    
T  41207270 gaggagtgtagggttttattatttacagtttccttgcaggaatcagtggcagatagatggttgtggttacc 41207200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 12646082 - 12645749
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||  ||||||| |  ||||||||||||||| |||||||||    
T  12646082 ttgttcttcttggtggagggagatagtcaggattagagatgggataggcgagggtggggaggattggtttgcggattgtgttaggaggagggtgggagat 12645983  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 200  Q
    || ||    || ||||||||||| ||||||||||||||   ||||||| | ||||  || |||||||| || | ||||||  ||||  | |||  ||||     
T  12645982 ggagccacaacagatttttggcgagattgttggtgtggtagtgttcctttgtgtgagcgctttaggcgactatatgacttagctgtcaataaagtaatca 12645883  T
Q  201 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 300  Q
    |||| ||||| |||||| || |||||||||| | ||| || |  |||| |  |||||| || || || ||||  ||| ||||||| ||||||||||||||    
T  12645882 cagtaaggaacatgttcttgttgggggtggaggagggtggaggagcgtggcagtggcgacgtcgtttatgggtgtggaaggaggatttggtagaggagtg 12645783  T
Q  301 tagggctttgttactaacagtttctttgcaggaa 334  Q
    ||||| ||| ||||||||| | ||||||||||||    
T  12645782 tagggatttattactaacaatctctttgcaggaa 12645749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 76 - 336
Target Start/End: Complemental strand, 40177139 - 40176879
Alignment:
Q  76 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 175  Q
    ||||||||||||||| ||||| ||||| |  ||||| ||||||||| | ||||||||||||||   ||||||  | ||||  || |||||||| |||| |    
T  40177139 ttgtgttaggaggagggtgggggatggagttgataccgatttttggtgagattgttggtgtggtagtgttccgttgtgtgaacgctttaggcgactttat 40177040  T
Q  176 gacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggctt 275  Q
    |||||  |  |  | ||||||||| | || ||||| |||||| || |||||||||| |  || ||||  |||| |  ||||||||| ||||| ||||  |    
T  40177039 gacttagccatcaataaatcaatcacggtgaggaagatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgt 40176940  T
Q  276 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatc 336  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  40176939 gggaggaggacttggtagaggagtgtagggctttattactaacagtctctttgcaggaatc 40176879  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 14440290 - 14440155
Alignment:
Q  1 ttgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 100  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||| |||||||| ||||| |||||||    ||||||  ||||||| ||| | |||    
T  14440290 ttgttcttcgtggtggagggagatagctaggattagagatgggataggcgagggtggggagggctggtttgcaggttgtgt--ggaggagggtgagggat 14440193  T
Q  101 ggggcagatactgatttttggcgtgattgttggtgtgg 138  Q
    || || ||||| ||| ||||||| ||||||||||||||    
T  14440192 ggagccgataccgatatttggcgagattgttggtgtgg 14440155  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 33515802 - 33515902
Alignment:
Q  2 tgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 101  Q
    ||||||||||||||||||||||| || | ||||| ||| |||||| |||||||||| ||||| ||||||  |  ||||||||||||||| ||||| ||||    
T  33515802 tgttcttcgtggtggagggagatagtcaagattaaagacgggatatgtgagggtggggagggttggtttacggattgtgttaggaggagggtgggggatg 33515901  T
Q  102 g 102  Q
    |    
T  33515902 g 33515902  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 36804205 - 36804150
Alignment:
Q  254 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||  |||||||||| ||||||||||| ||| |||||||||||||||||||    
T  36804205 tggcgtcgaaggttgtgggcgtgggaggaggacttgttagaggagtgtagggcttt 36804150  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 18844490 - 18844530
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  18844490 ggttgtgggcgtgggaggaggagttggtggaggagtgtagg 18844530  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 36804420 - 36804365
Alignment:
Q  254 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||  |||||| ||| ||||||||||| ||| |||||||||||||||||||    
T  36804420 tggcgtcgaaggttgtaggcgtgggaggaggacttgttagaggagtgtagggcttt 36804365  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 38604247 - 38604306
Alignment:
Q  275 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 334  Q
    |||||||| || ||||||||||||||||||  |||  |||| ||||||||||||||||||    
T  38604247 tgggaggaagacttggtagaggagtgtaggaatttagtacttacagtttctttgcaggaa 38604306  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 22052899 - 22052865
Alignment:
Q  275 tgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||||||||| |||||||||||||||||||    
T  22052899 tgggaggaggagttgctagaggagtgtagggcttt 22052865  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 44547706 - 44547756
Alignment:
Q  265 gttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 315  Q
    ||||| ||| |||||||||||||||||||||||||||| | |||| |||||    
T  44547706 gttgttggcatgggaggaggagttggtagaggagtgtatgactttattact 44547756  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 301
Target Start/End: Original strand, 12808007 - 12808044
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgt 301  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  12808007 ggttgtgggcgtgggaggaggcgttggtagaggagtgt 12808044  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 14440040 - 14439959
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 334  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  ||||||| || ||| ||||||||||| ||||||||||||    
T  14440040 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtatggatttattactaacagtctctttgcaggaa 14439959  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 16315632 - 16315672
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  16315632 ggttgtgggcgtgggaggaggccttggtagaggagtgtagg 16315672  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 18489091 - 18489051
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||||| ||||||||||| || |||||||||||||||    
T  18489091 ggttgtgggcgtgggaggaggaattagtagaggagtgtagg 18489051  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 31093536 - 31093468
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagg 332  Q
    |||| ||||| |||||||| ||||| ||||||||||||||| ||||  |||| || ||||| |||||||    
T  31093536 ggttatgggcgtgggaggatgagttagtagaggagtgtaggactttactactgactgtttcattgcagg 31093468  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 33276209 - 33276265
Alignment:
Q  253 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||||| ||||||| ||| ||||||||||| ||| || ||||||||||| ||||    
T  33276209 gtggcgtcgtcggttgtaggcatgggaggaggaattgttaaaggagtgtaggacttt 33276265  T

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Target: scaffold1350 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 86 - 1
Alignment:
Q  5 tcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggag 90  Q
    ||||| |||||||||||||| || || ||||||||||||||||| |||||||  ||||| ||||||| |  |||||||||||||||    
T  86 tcttcttggtggagggagatagtcagaattagagatgggataggcgagggtgtggagggttggtttgcggattgtgttaggaggag 1  T

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Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 7836 - 7766
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| ||||||| |  || |||||||||| ||||||||||||  | |||||||||||||||||||    
T  7836 ggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 7766  T

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Target: scaffold0179; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 12770 - 12700
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||| ||||||| |  || |||||||||| ||||||||||||  | |||||||||||||||||||    
T  12770 ggggaggcgtggaggtggtggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 12700  T

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Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 15482 - 15552
Alignment:
Q  239 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    ||||||| || ||||||||||||  | |||||||| |||||||||||  || |||||||||||||||||||    
T  15482 ggggaggggtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggcttt 15552  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 182412 - 182367
Alignment:
Q  264 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 309  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  182412 ggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 182367  T

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Target: scaffold0555 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 7949 - 7911
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  7949 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 7911  T

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Target: scaffold0043 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 34468 - 34506
Alignment:
Q  266 ttgtgggcttgggaggaggagttggtagaggagtgtagg 304  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  34468 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 34506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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