View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18038_low_10 (Length: 325)

Name: NF18038_low_10
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18038_low_10
NF18038_low_10
[»] chr7 (3 HSPs)
chr7 (4-318)||(18395911-18396234)
chr7 (204-263)||(27073633-27073692)
chr7 (204-263)||(27204621-27204680)
[»] chr8 (4 HSPs)
chr8 (196-311)||(11712244-11712361)
chr8 (217-271)||(32902470-32902524)
chr8 (165-246)||(7597380-7597462)
chr8 (196-246)||(8153572-8153622)
[»] chr2 (2 HSPs)
chr2 (196-311)||(4560904-4561021)
chr2 (229-271)||(28671797-28671839)
[»] chr4 (6 HSPs)
chr4 (158-271)||(21704111-21704225)
chr4 (158-251)||(3739418-3739511)
chr4 (224-311)||(6677306-6677394)
chr4 (220-263)||(4587792-4587835)
chr4 (217-298)||(36463657-36463738)
chr4 (218-251)||(43208174-43208207)
[»] scaffold0129 (1 HSPs)
scaffold0129 (217-297)||(19854-19933)
[»] chr5 (1 HSPs)
chr5 (199-271)||(5611453-5611524)
[»] chr3 (3 HSPs)
chr3 (199-271)||(21156740-21156811)
chr3 (220-271)||(40519481-40519532)
chr3 (224-268)||(9666754-9666797)
[»] chr1 (3 HSPs)
chr1 (212-268)||(2263271-2263327)
chr1 (224-271)||(8871343-8871390)
chr1 (198-246)||(25116407-25116455)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 4 - 318
Target Start/End: Original strand, 18395911 - 18396234
Alignment:
Q  4 gatggacatcatcaaggaaaacaaatgttgaaatttgtctaaaatatcgacaaaaattgggccgtgatttgcaaaaatcgtgacgcgattttggttaagg 103  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18395911 gatggccataatcaaggaaaacaaatgttgaaatttgtctaaaaaatcgacaaaaattgggccgcgatttgcaaaaatcgtgacgagattttggttaagg 18396010  T
Q  104 t---------tttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 194  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396011 ttttggaggttttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 18396110  T
Q  195 tacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaacgttgggtatcaaggaggtaactt 294  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  18396111 tacgattttctcggaacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagagagaaactttggatatcaaggaggtaactt 18396210  T
Q  295 taggttgaatgtctttgatgatgt 318  Q
    ||||||||||||||||| ||||||    
T  18396211 taggttgaatgtctttggtgatgt 18396234  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 27073633 - 27073692
Alignment:
Q  204 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 263  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27073633 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27073692  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 27204680 - 27204621
Alignment:
Q  204 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 263  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27204680 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27204621  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 11712361 - 11712244
Alignment:
Q  196 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaacgttgggtatc-aaggaggtaactt 294  Q
    |||||||||| ||||| |||||| ||||||||  ||||||||| |||||||| ||||||||||||||| ||||||| | ||||||| || ||||||||||    
T  11712361 acgattttcttgggacatgtgcactatataaggtttcattctttatgttttaggtagagcttcaagagagagaaacttagggtatcaaatgaggtaactt 11712262  T
Q  295 ta-ggttgaatgtctttg 311  Q
    || |||||| ||||||||    
T  11712261 tagggttgagtgtctttg 11712244  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 32902524 - 32902470
Alignment:
Q  217 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaac 271  Q
    |||| ||||||||||||||||||||||||| || || |||||||||| |||||||    
T  32902524 cattgtataagacttcattcttcatgttttgaggagggcttcaagagagagaaac 32902470  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 7597380 - 7597462
Alignment:
Q  165 aaatcgtggcacaattagtgaaaattgtgatacga-ttttctcgggacttgtgcattatataagacttcattcttcatgtttt 246  Q
    |||||||||||||||| |||||||| | |  || | |||||||| || ||| ||| |||||||| ||||||||||||||||||    
T  7597380 aaatcgtggcacaattggtgaaaatcggggcacaatttttctcgagatttgagcactatataaggcttcattcttcatgtttt 7597462  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 8153572 - 8153622
Alignment:
Q  196 acgattttctcgggacttgtgcattatataagacttcattcttcatgtttt 246  Q
    |||||||||||||  ||||| ||||||| ||| ||||||||||||||||||    
T  8153572 acgattttctcggatcttgtacattataaaaggcttcattcttcatgtttt 8153622  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 311
Target Start/End: Original strand, 4560904 - 4561021
Alignment:
Q  196 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaacgttgggtatca-aggaggtaactt 294  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || | | ||||||||| || |||| | ||  |||| ||||| ||||||    
T  4560904 acgattttctcgggacttgtgcattgtataagacttcattcttcatgtttttagaataacttcaagagagaaaaacttaggaaatcagaggagataactt 4561003  T
Q  295 tag-gttgaatgtctttg 311  Q
    ||| ||||| ||||||||    
T  4561004 tagagttgagtgtctttg 4561021  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 28671797 - 28671839
Alignment:
Q  229 cttcattcttcatgttttaagtagagcttcaagagtgagaaac 271  Q
    |||||||||||||||||| ||||| |||||||||| |||||||    
T  28671797 cttcattcttcatgttttgagtagggcttcaagagagagaaac 28671839  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 21704225 - 21704111
Alignment:
Q  158 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtaga-gct 256  Q
    |||| |||||||||||||| |||||  ||||||| |  ||||||||  | |||| |||||| ||| |||||||||||| ||||||||||  ||||| |||    
T  21704225 taacgtgaaatcgtggcacgattaggtaaaattggggcacgattttgacaggacatgtgcactatttaagacttcatttttcatgttttgtgtagaggct 21704126  T
Q  257 tcaagagtgagaaac 271  Q
    ||||||| |||||||    
T  21704125 tcaagagagagaaac 21704111  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 3739511 - 3739418
Alignment:
Q  158 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagta 251  Q
    |||| ||||||||||||| |||  ||| |||| | |  ||||||||  |||||| |||||||||| ||||||||||||||||||||||| ||||    
T  3739511 taacgtgaaatcgtggcaaaatgtgtgtaaatcgaggcacgattttgacgggacatgtgcattatttaagacttcattcttcatgttttgagta 3739418  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 6677306 - 6677394
Alignment:
Q  224 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaacgttgggtatc-aaggaggtaacttta-ggttgaatgtctttg 311  Q
    |||| |||||||||||||||||| ||||| |||||||||  ||||||  | ||||||| ||||||||||||||| |||||| ||||||||    
T  6677306 taaggcttcattcttcatgttttgagtag-gcttcaagaaagagaaatttagggtatcaaaggaggtaactttagggttgagtgtctttg 6677394  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 4587792 - 4587835
Alignment:
Q  220 tatataagacttcattcttcatgttttaagtagagcttcaagag 263  Q
    |||| |||||||||||||||||||||| || |||||||||||||    
T  4587792 tataaaagacttcattcttcatgttttgaggagagcttcaagag 4587835  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 36463738 - 36463657
Alignment:
Q  217 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaacgttgggtatca-aggaggtaactttagg 298  Q
    |||||| |||| ||||||||||||| |||| |||||||||||||||| || |||| | ||  |||| ||||||||||||||||    
T  36463738 cattatttaaggcttcattcttcat-ttttgagtagagcttcaagagagaaaaacttgggaaatcataggaggtaactttagg 36463657  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 43208207 - 43208174
Alignment:
Q  218 attatataagacttcattcttcatgttttaagta 251  Q
    ||||||||||||||||||||||||||||| ||||    
T  43208207 attatataagacttcattcttcatgttttgagta 43208174  T

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Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 19933 - 19854
Alignment:
Q  217 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaacgttgggtatcaaggaggtaactttag 297  Q
    ||||||||| ||||||||||||| |||||| ||||| |||||||||| | ||||| | ||  |||||||||||||||||||    
T  19933 cattatatatgacttcattcttcttgttttgagtag-gcttcaagagagtgaaacttgggaaatcaaggaggtaactttag 19854  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 5611524 - 5611453
Alignment:
Q  199 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaac 271  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||    
T  5611524 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaac 5611453  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 21156811 - 21156740
Alignment:
Q  199 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaac 271  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||    
T  21156811 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaac 21156740  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 40519532 - 40519481
Alignment:
Q  220 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaac 271  Q
    |||||||| |||||||| |||||| || |||||||||||||||| |||||||    
T  40519532 tatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaac 40519481  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 9666797 - 9666754
Alignment:
Q  224 taagacttcattcttcatgttttaagtagagcttcaagagtgaga 268  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||    
T  9666797 taagacttcattcttcat-ttttgagtagagcttcaagagagaga 9666754  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 2263327 - 2263271
Alignment:
Q  212 ttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgaga 268  Q
    ||||||| |||||||| ||||||||||||||||||  ||||||| ||||||| ||||    
T  2263327 ttgtgcactatataaggcttcattcttcatgttttgtgtagagcgtcaagagagaga 2263271  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 8871390 - 8871343
Alignment:
Q  224 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaac 271  Q
    |||| ||||||||||||||||||  ||||||||||||||| |||||||    
T  8871390 taaggcttcattcttcatgtttttggtagagcttcaagagagagaaac 8871343  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 25116407 - 25116455
Alignment:
Q  198 gattttctcgggacttgtgcattatataagacttcattcttcatgtttt 246  Q
    ||||||||| || | |||||| |||||||| ||||||||||||||||||    
T  25116407 gattttctcaggtcatgtgcactatataagtcttcattcttcatgtttt 25116455  T

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