View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18038_low_12 (Length: 283)
Name: NF18038_low_12
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18038_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 31447982 - 31447728
Alignment:
| Q |
17 |
taggactgtcaagattccttttttgtgcgcacacatagagcactcaacactagaggctgcatgcaagttaattgggaataaattctaatttatctttaat |
116 |
Q |
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| T |
31447982 |
taggactgtcaagatttcttttttgtgcgcacacatagagcactcaacactagaggctgcatgcaagttaattgggaataaattctaatttatctttaat |
31447883 |
T |
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| Q |
117 |
caatattaaagtgcctttatctaaaactaattacgaatcaattactggttcctagctagaaggaaaataaatgttagctgtcatattttaattaattgta |
216 |
Q |
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| T |
31447882 |
caatattaaagtgcctttatctaaaact--ttacgaatcaattactggttcctagctagaaggaaaataaatgttagctgtcatattttaattaatcgta |
31447785 |
T |
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| Q |
217 |
ggatcctagagaataaattaatctgtcatgagtatactataaataggtgttcctttg |
273 |
Q |
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| T |
31447784 |
gaatcctagagaataaattcatctgtcatgagtatactataaataggtgttcctttg |
31447728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 31454796 - 31454566
Alignment:
| Q |
39 |
ttgtgcgcacacatagagcactcaacactagaggctgcatgcaagttaattgggaataaattctaatttatctttaatcaatattaaagtgcctttatct |
138 |
Q |
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| T |
31454796 |
ttgtgcgcacacatagagcactcaacactaga--ctgcatgcaagttatttgggaataaattctaatttatctttaaccaataataaagttcctttatat |
31454699 |
T |
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| Q |
139 |
aaaactaattacgaatcaattactggttcctagctagaaggaaaataaatgttagctgtcatattttaattaattgtaggatcctagagaataaattaat |
238 |
Q |
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| T |
31454698 |
aaaact--ttacgaatcaattactggttcctagctagaaggaaaataaatgttagctgtcatattttaattaatcgtagaatcctagagaataaattcat |
31454601 |
T |
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| Q |
239 |
ctgtcatgagtatactataaataggtgttcctttg |
273 |
Q |
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| T |
31454600 |
ctgtcatgagtatactataaataggtgttactttg |
31454566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 31441652 - 31441579
Alignment:
| Q |
188 |
tgttagctgtcatattttaattaattgtaggatcctagagaataaattaatctgtcatgagtatactataaata |
261 |
Q |
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| T |
31441652 |
tgttagctgtcatatttcaattaattgtaggatcctagagaataaattcatatgacattagtatactataaata |
31441579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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