View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18038_low_14 (Length: 273)

Name: NF18038_low_14
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18038_low_14
NF18038_low_14
[»] chr2 (12 HSPs)
chr2 (40-257)||(11095645-11095862)
chr2 (58-255)||(11104106-11104303)
chr2 (97-257)||(11145250-11145410)
chr2 (97-257)||(11149184-11149344)
chr2 (97-257)||(11136951-11137111)
chr2 (60-186)||(11171246-11171372)
chr2 (64-243)||(11155581-11155760)
chr2 (95-257)||(11110099-11110261)
chr2 (64-257)||(11118103-11118296)
chr2 (97-179)||(10794028-10794110)
chr2 (97-179)||(11177259-11177341)
chr2 (149-257)||(11191956-11192064)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 40 - 257
Target Start/End: Complemental strand, 11095862 - 11095645
Alignment:
Q  40 attgatgaaattaatgataaaacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaactgtgttaggacattcattttca 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||||    
T  11095862 attgatgaaattaatgataaaacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaacagtggctggacattcattttca 11095763  T
Q  140 actgctgtcttgatttgattcacaacatccaaacctcttaatgagtttatgtttggaagtgcatcttgctcacttaatatggtatcagtgttgttcaaca 239  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  11095762 actgctgtcttgatttggtttacaacatccaaaccccttaatgagtttatgtttggaagtgcatcttgctcacttactatggtattagtgttgttcaaca 11095663  T
Q  240 aaactgatccatcacaac 257  Q
    ||||||||||||||||||    
T  11095662 aaactgatccatcacaac 11095645  T

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Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 11104303 - 11104106
Alignment:
Q  58 aaaacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttga 157  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| |    
T  11104303 aaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttta 11104204  T
Q  158 ttcacaacatccaaacctcttaatgagtttatgtttggaagtgcatcttgctcacttaatatggtatcagtgttgttcaacaaaactgatccatcaca 255  Q
    ||||||||||||||||   ||||||||||| ||||||||| ||||||||| ||||| |  || |||||||||||||||||||||||||||||||||||    
T  11104203 ttcacaacatccaaacgctttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcaca 11104106  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 11145410 - 11145250
Alignment:
Q  97 aagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttatgtttgga 196  Q
    |||||||||||||||||||||||||||||| ||  | ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  11145410 aagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctctcaatgagtttctgtttgga 11145311  T
Q  197 agtgcatcttgctcacttaatatggtatcagtgttgttcaacaaaactgatccatcacaac 257  Q
    |  |||||||| ||||| |  || ||| ||||||| ||||||||||||||| |||||||||    
T  11145310 aaagcatcttgttcactgacaatagtagcagtgttattcaacaaaactgatgcatcacaac 11145250  T

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Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 11149344 - 11149184
Alignment:
Q  97 aagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttatgtttgga 196  Q
    |||||||||||| ||||||||||||||||||||  | ||||| || ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  11149344 aagaatatcagcgcaagaaactgtgttaggacaagccttttccacagctgttttgatttgattcacaacatctaaacctcttaatgagtttctgtttgga 11149245  T
Q  197 agtgcatcttgctcacttaatatggtatcagtgttgttcaacaaaactgatccatcacaac 257  Q
    |  |||||||| ||||| |  | ||||||||| |||||||  ||||||||| |||||||||    
T  11149244 aaagcatcttgttcactcacaacggtatcagttttgttcagtaaaactgatgcatcacaac 11149184  T

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Target: chr2; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 11137111 - 11136951
Alignment:
Q  97 aagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttatgtttgga 196  Q
    |||||||||||||||||||||||||||||||||  | ||||| |||||||| |||||||||||||||||||||||||||| ||  ||||| || |||||     
T  11137111 aagaatatcagcacaagaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaacctcgtagagagttgatatttggg 11137012  T
Q  197 agtgcatcttgctcacttaatatggtatcagtgttgttcaacaaaactgatccatcacaac 257  Q
    |  || ||||| ||||| |  ||||||||||| |||||||| ||||||||| |||||||||    
T  11137011 aaagcttcttgttcactcacaatggtatcagttttgttcaataaaactgatgcatcacaac 11136951  T

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Target: chr2; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 11171372 - 11171246
Alignment:
Q  60 aacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttgatt 159  Q
    |||||||||||||||| |  | || ||| |||| || ||||||||||||||||||||| |||||||||||  ||||||| |||||||| |||||||||||    
T  11171372 aacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgatt 11171273  T
Q  160 cacaacatccaaacctcttaatgagtt 186  Q
    ||||||||| |||||||||| ||||||    
T  11171272 cacaacatctaaacctcttattgagtt 11171246  T

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Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 243
Target Start/End: Complemental strand, 11155760 - 11155581
Alignment:
Q  64 taccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttgattcaca 163  Q
    |||||||||||| | | ||||||| |||| || |||||||||||||||||||||||||||||||||  || |||| |  || || ||||| ||||| |||    
T  11155760 taccagaacagaggatgcttgagcagcaagagcaagaatatcagcacaagaaactgtgttaggacaagcactttctatagcagttttgatctgatttaca 11155661  T
Q  164 acatccaaacctcttaatgagtttatgtttggaagtgcatcttgctcacttaatatggtatcagtgttgttcaacaaaac 243  Q
    ||||||||||||||||| |||||  | |||||||  || | ||| || ||||  || ||| |||| ||||||||||||||    
T  11155660 acatccaaacctcttaaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaac 11155581  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 257
Target Start/End: Complemental strand, 11110261 - 11110099
Alignment:
Q  95 gtaagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttatgtttg 194  Q
    |||||||||||||||||||||||| | ||||| ||  | ||||| |||   |||||||||||||| | ||||||||| |||||||| ||||| || ||||    
T  11110261 gtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttg 11110162  T
Q  195 gaagtgcatcttgctcacttaatatggtatcagtgttgttcaacaaaactgatccatcacaac 257  Q
    |||  |||||||| ||||| |  || ||  | ||||| ||||||||||||||| |||||||||    
T  11110161 gaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaac 11110099  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 257
Target Start/End: Complemental strand, 11118296 - 11118103
Alignment:
Q  64 taccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttgattcaca 163  Q
    ||||||||| |||| ||||  ||||||||  || ||||||||||||||||||||| | ||||||||  | ||||| ||  | || || || ||||| | |    
T  11118296 taccagaactgaagatactccagctgcaagtgtgagaatatcagcacaagaaactttattaggacaaactttttccacctcagttttaatctgattgata 11118197  T
Q  164 acatccaaacctcttaatgagtttatgtttggaagtgcatcttgctcacttaatatggtatcagtgttgttcaacaaaactgatccatcacaac 257  Q
    |||||||| | |||||| |||||||| ||||||   |||||||| |||||    || |||  ||| || ||||||||||||||| |||||||||    
T  11118196 acatccaatcttcttaaggagtttatatttggaccagcatcttgttcactcgcaatagtagaagttttattcaacaaaactgatgcatcacaac 11118103  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 10794028 - 10794110
Alignment:
Q  97 aagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttgattcacaacatccaaacctctta 179  Q
    |||||||||||||||||||||||| ||||| ||  | ||||| ||  ||||||||||  |||||||||| | |||||||||||    
T  10794028 aagaatatcagcacaagaaactgtattagggcaagctttttccacgtctgtcttgatacgattcacaacttgcaaacctctta 10794110  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 11177341 - 11177259
Alignment:
Q  97 aagaatatcagcacaagaaactgtgttaggacattcattttcaactgctgtcttgatttgattcacaacatccaaacctctta 179  Q
    ||||||||||||||||||||| |||||||||||  ||||||| || ||||| ||||| || || |  || |||||||||||||    
T  11177341 aagaatatcagcacaagaaacagtgttaggacaagcattttccaccgctgttttgatctggtttatcacgtccaaacctctta 11177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 11191956 - 11192064
Alignment:
Q  149 ttgatttgattcacaacatccaaacctcttaatgagtttatgtttggaagtgcatcttgctcacttaatatggtatcagtgttgttcaacaaaactgatc 248  Q
    |||||||||||||||| |||||||||||||| ||||||| | ||||| |  ||  |||||||||| |  || ||||||| ||  |||||||| | ||||     
T  11191956 ttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcacgatagtatcagagtcattcaacaagagtgatg 11192055  T
Q  249 catcacaac 257  Q
    |||||||||    
T  11192056 catcacaac 11192064  T

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