View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18038_low_16 (Length: 267)
Name: NF18038_low_16
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18038_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 46555149 - 46555386
Alignment:
| Q |
8 |
cgaagaaaatatcattcacataataccaaccattgacaatctatcaacttgattgaactatatggaaaaacaaaccatcgacaggaaattcaagactgca |
107 |
Q |
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| T |
46555149 |
cgaaaaaaatatcattcacataataccaaccattgacaatctatcaacttgattgaactatatggaaaaacaaaccatcgacaggaaattcaagactgca |
46555248 |
T |
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| Q |
108 |
taatacacaatctccgagtcgcagaatactatcaaattcaaatttgatcatttgtctggtcttcaatttagcatcccggttcgatttaaactcagtggaa |
207 |
Q |
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| T |
46555249 |
taatacacaatctccgagtcgcagaatgctatcaaattcaaatttgatcatttatctggtcttcaatttagcatcccggttcgatttaaactcagtggaa |
46555348 |
T |
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| Q |
208 |
tacaagcatattagtttaccttgtggaaatgcttatag |
245 |
Q |
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| T |
46555349 |
tacaagcatattagtttaccttgtggaaatgctcatag |
46555386 |
T |
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Back To:
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 10822207 - 10822256
Alignment:
| Q |
111 |
tacacaatctccgagtcgcagaatactatcaaattcaaatttgatcattt |
160 |
Q |
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| T |
10822207 |
tacaccatctccgagtcgtagaatattatcaaatttaaatttgatcattt |
10822256 |
T |
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