View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18038_low_4 (Length: 422)

Name: NF18038_low_4
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18038_low_4
NF18038_low_4
[»] chr8 (5 HSPs)
chr8 (21-407)||(4143437-4143824)
chr8 (17-222)||(4151495-4151700)
chr8 (17-231)||(4131039-4131253)
chr8 (17-229)||(4160150-4160362)
chr8 (17-213)||(4120794-4120990)
[»] chr7 (13 HSPs)
chr7 (60-213)||(20263551-20263704)
chr7 (55-193)||(20288770-20288908)
chr7 (40-207)||(19938564-19938731)
chr7 (40-207)||(19969703-19969870)
chr7 (60-208)||(20243061-20243209)
chr7 (60-208)||(20283654-20283802)
chr7 (60-207)||(20231096-20231243)
chr7 (55-208)||(20062930-20063083)
chr7 (60-208)||(20279077-20279225)
chr7 (60-208)||(20294176-20294324)
chr7 (39-124)||(20005811-20005896)
chr7 (63-208)||(20168485-20168630)
chr7 (60-208)||(20273366-20273514)
[»] chr4 (1 HSPs)
chr4 (39-208)||(40824213-40824382)
[»] chr2 (7 HSPs)
chr2 (21-184)||(2745857-2746020)
chr2 (55-184)||(2712948-2713077)
chr2 (21-184)||(2724027-2724190)
chr2 (91-187)||(2662798-2662894)
chr2 (69-187)||(34328539-34328657)
chr2 (284-326)||(34888753-34888795)
chr2 (55-184)||(2708024-2708153)
[»] chr5 (1 HSPs)
chr5 (283-407)||(15446510-15446634)
[»] chr3 (1 HSPs)
chr3 (309-342)||(18737345-18737378)


Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 407
Target Start/End: Complemental strand, 4143824 - 4143437
Alignment:
Q  21 gtgaaaagactctcaaagtcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcg-aaatctcgtaagactt 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4143824 gtgaaaagactctcgaagtcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcggaaatctcgtaagactt 4143725  T
Q  120 ctaggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagttattttgcctct 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  4143724 ctaggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaacaaaagtttggatgcattcctctttggttagttattttgccact 4143625  T
Q  220 tttgttttctaagttctaaccacaaattaatatttttagctcagttagtagtacagtgataagtattacacaacaagagtgaagaagataccttagagaa 319  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4143624 tttgttttctaagttctaaccacaaattaatattgttagctcagttagtagtacagtgataagtattacacaacaagagtgaagaagataccttagagaa 4143525  T
Q  320 caagcaatctagtttagcttagtaactagtttctttattctactgctatcctatcttagctattgtatgtcttcatttagctatatat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4143524 caagcaatctagtttagcttagtaactagtttctttattctactgctatcctatcttagctattgtatgtcttcatttagctatatat 4143437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 4151700 - 4151495
Alignment:
Q  17 tgctgtgaaaagactctcaaagtcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaaga 116  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || |||    
T  4151700 tgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaattcatgaatgaagttgtagtgatttctaaacttcaacatcgcaatcttgtgaga 4151601  T
Q  117 cttctaggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagttattttgcc 216  Q
    ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |    
T  4151600 cttttaggttgctgtgttgaaagaggagagcaaattttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagttctttggtc 4151501  T
Q  217 tctttt 222  Q
    ||||||    
T  4151500 tctttt 4151495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 4131253 - 4131039
Alignment:
Q  17 tgctgtgaaaagactctcaaagtcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaaga 116  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||    
T  4131253 tgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaattcatgaatgaagttgtagtgatttctaaacttcaacatcgcaatcttgtaaga 4131154  T
Q  117 cttctaggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagttattttgcc 216  Q
    ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||  |    
T  4131153 cttcttggttgttgtgttgaaagaggagagaaaatgttggtctatgagttcatgccaaataaaagtttggatgcctttctctttggttagttcttttcac 4131054  T
Q  217 tcttttgttttctaa 231  Q
    || ||||| ||||||    
T  4131053 tcatttgtattctaa 4131039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 4160362 - 4160150
Alignment:
Q  17 tgctgtgaaaagactctcaaagtcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaaga 116  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||| ||||||    
T  4160362 tgctgtaaaaagactctcaaaatcatctggacaaggaatagaagaatttatgaatgaagtagcagtgatttctaaacttcaacatcgcaatcttgtaaga 4160263  T
Q  117 cttctaggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagttattttgcc 216  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||| |||||||    
T  4160262 cttcttggttgctgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataagagtctggatgcctttctctttggttagttcttttgcc 4160163  T
Q  217 tcttttgttttct 229  Q
    || ||||| ||||    
T  4160162 tcatttgtattct 4160150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 4120990 - 4120794
Alignment:
Q  17 tgctgtgaaaagactctcaaagtcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaaga 116  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  4120990 tgctgtgaaaagactctcaaaagcatctggacaaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatcgtaatcttgtaaga 4120891  T
Q  117 cttctaggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagttatttt 213  Q
    ||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||  ||  ||||||||||||| ||||    
T  4120890 cttcttggttgttgtgtagaaaggggggagcaaatgttggtttatgagttcatgccaaataagagtttggatgtctttatctttggttagttctttt 4120794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 213
Target Start/End: Original strand, 20263551 - 20263704
Alignment:
Q  60 gaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggttt 159  Q
    ||||||||||||||| |||| ||||||| ||| |||||||| || ||||| ||||||||| | || |||||||||||| | |  ||  | |||||| | |    
T  20263551 gaattcatgaacgaaatagtggtgatttgtaagcttcaacaccgtaatcttgtaagacttattggctgttgtgttgaaggtgatgaaaagatgttgatgt 20263650  T
Q  160 atgagttcatgccaaataaaagtttggatgcattcctctttggttagttatttt 213  Q
    ||||||  |||||||| |||||||||||||||||| ||||||||||||| ||||    
T  20263651 atgagtatatgccaaacaaaagtttggatgcattcatctttggttagttttttt 20263704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 193
Target Start/End: Original strand, 20288770 - 20288908
Alignment:
Q  55 tagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgtt 154  Q
    |||||||||||| ||| |||||||| || |||| ||| ||||||||||| |||||  |||||||||| || || ||||||||| |||  ||  | |||||    
T  20288770 tagaagaattcaagaatgaagtagttgtcatttgtaagcttcaacatcgcaatctgataagacttcttggctgctgtgttgaaggagaggaaaagatgtt 20288869  T
Q  155 ggtttatgagttcatgccaaataaaagtttggatgcatt 193  Q
    | | ||||||| |||||||||||||||||||||||||||    
T  20288870 gatatatgagtacatgccaaataaaagtttggatgcatt 20288908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 207
Target Start/End: Original strand, 19938564 - 19938731
Alignment:
Q  40 catcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaag 139  Q
    |||| ||||||||  || ||||||||||||| ||||| |  || |||||||| |||||||| || ||||| |||| |||||| || || ||||||||  |    
T  19938564 catctggacaaggtctaaaagaattcatgaatgaagtggcggtcatttctaagcttcaacaccgcaatcttgtaaaacttcttggctgctgtgttgacgg 19938663  T
Q  140 aggagagcaaatgttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagt 207  Q
    ||  ||  | |||||| | ||||||| |||||||||||||||||||||||| || |||||||||||||    
T  19938664 agaggaaaagatgttgatatatgagtacatgccaaataaaagtttggatgcttttctctttggttagt 19938731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 207
Target Start/End: Original strand, 19969703 - 19969870
Alignment:
Q  40 catcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaag 139  Q
    |||| ||||||||  || ||||||||||||| ||||| |  || |||||||| |||||||| || ||||| |||| |||||| || || ||||||||  |    
T  19969703 catctggacaaggtctaaaagaattcatgaatgaagtggcggtcatttctaagcttcaacaccgcaatcttgtaaaacttcttggctgctgtgttgacgg 19969802  T
Q  140 aggagagcaaatgttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagt 207  Q
    ||  ||  | |||||| | ||||||| |||||||||||||||||||||||| || |||||||||||||    
T  19969803 agaggaaaagatgttgatatatgagtacatgccaaataaaagtttggatgcttttctctttggttagt 19969870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 20243061 - 20243209
Alignment:
Q  60 gaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggttt 159  Q
    |||||||||||||||||| | ||||||| ||| ||||||||||| || || ||||| ||| | || |||||||||||| | |  ||  | |||||| | |    
T  20243061 gaattcatgaacgaagtattggtgatttgtaagcttcaacatcgcaaccttgtaaggcttattggctgttgtgttgaaggtgatgaaaagatgttgatgt 20243160  T
Q  160 atgagttcatgccaaataaaagtttggatgcattcctctttggttagtt 208  Q
    |||| | ||||||||| |||||||||||||||||  |||||||||||||    
T  20243161 atgaatacatgccaaacaaaagtttggatgcatttatctttggttagtt 20243209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 20283654 - 20283802
Alignment:
Q  60 gaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggttt 159  Q
    ||||||||||| |||||| | ||||||  ||| |||||||| || ||||| ||||||||| | || |||||||||||| |||  ||  | |||||| | |    
T  20283654 gaattcatgaatgaagtaatggtgattagtaagcttcaacaccgcaatcttgtaagactttttggctgttgtgttgaaggagatgaaaagatgttgatgt 20283753  T
Q  160 atgagttcatgccaaataaaagtttggatgcattcctctttggttagtt 208  Q
    |||||  |||||||||||||| ||||||||| ||| |||||||||||||    
T  20283754 atgaggacatgccaaataaaactttggatgcgttcatctttggttagtt 20283802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 207
Target Start/End: Original strand, 20231096 - 20231243
Alignment:
Q  60 gaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggttt 159  Q
    |||||||||||||||||||| || |||| ||| |||||||| || || || ||||||||| | || |||||||||||| | |  ||  | |||||| | |    
T  20231096 gaattcatgaacgaagtagtggtaatttgtaagcttcaacaccgcaaccttgtaagacttattggctgttgtgttgaaggtgatgaaaagatgttgatgt 20231195  T
Q  160 atgagttcatgccaaataaaagtttggatgcattcctctttggttagt 207  Q
    |||| | ||||||||| |||||||||||| ||||| ||||||||||||    
T  20231196 atgaatacatgccaaacaaaagtttggattcattcatctttggttagt 20231243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 20063083 - 20062930
Alignment:
Q  55 tagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgtt 154  Q
    |||||||||||||||| |||||||| ||  ||| ||| |||||||| || ||||| ||||||||||| || |||||| ||||  | |  ||  | |||||    
T  20063083 tagaagaattcatgaatgaagtagtggtcctttgtaagcttcaacaccgtaatcttgtaagacttcttggctgttgtattgacggtgatgaaaagatgtt 20062984  T
Q  155 ggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagtt 208  Q
    | | ||||||| ||||||||| |||||||||||||||||  |||| ||||||||    
T  20062983 gatgtatgagtacatgccaaacaaaagtttggatgcatttatcttcggttagtt 20062930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 20279077 - 20279225
Alignment:
Q  60 gaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggttt 159  Q
    ||||| ||||| |||||||| ||  ||| ||| |||||||| || ||||| || | |||||| ||||||||| ||||| | |  ||  | |||||| | |    
T  20279077 gaatttatgaatgaagtagtggtcctttgtaagcttcaacaccgcaatcttgttaaacttcttggttgttgtattgaaggtgatgaaaagatgttgatgt 20279176  T
Q  160 atgagttcatgccaaataaaagtttggatgcattcctctttggttagtt 208  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  20279177 atgagtacatgccaaacaaaagtttggatgcattcatctttggttagtt 20279225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 20294176 - 20294324
Alignment:
Q  60 gaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggttt 159  Q
    ||||||||||| |||||||| ||  ||| ||| |||||||| || ||||| ||||| ||||| || || ||| ||||| | |  ||| | |||||| | |    
T  20294176 gaattcatgaatgaagtagtggttctttgtaagcttcaacaccgtaatcttgtaaggcttcttggctgctgtattgaaggcgatgagaagatgttgatgt 20294275  T
Q  160 atgagttcatgccaaataaaagtttggatgcattcctctttggttagtt 208  Q
    |||||| ||||||||| || ||||||||||||||| |||||||||||||    
T  20294276 atgagtacatgccaaacaagagtttggatgcattcatctttggttagtt 20294324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 20005896 - 20005811
Alignment:
Q  39 tcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctagg 124  Q
    ||||| ||||||||  |||||||||||||||| ||||| |||||||||||||| ||||| || || ||||| ||||||||| ||||    
T  20005896 tcatccggacaagggttagaagaattcatgaatgaagtcgtagtgatttctaagcttcagcaccgcaatcttgtaagacttgtagg 20005811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 20168630 - 20168485
Alignment:
Q  63 ttcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggtttatg 162  Q
    |||||||| |||||||| || |||| ||| |||||||| || ||||| ||||||||| | ||||| ||| ||||| | |  ||  | |||||| | ||||    
T  20168630 ttcatgaatgaagtagtggttatttgtaagcttcaacaccgcaatcttgtaagacttgttggttgctgtattgaaggcgatgaaaagatgttgatgtatg 20168531  T
Q  163 agttcatgccaaataaaagtttggatgcattcctctttggttagtt 208  Q
    ||| ||||| ||| | |||||||||||||||| |||||||||||||    
T  20168530 agtacatgctaaacagaagtttggatgcattcatctttggttagtt 20168485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 20273366 - 20273514
Alignment:
Q  60 gaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggttt 159  Q
    ||||||||||| |||||||| ||  ||| ||| |||||||| || ||||| ||||||||||| || || |||  |||  | |  ||  | |||||| | |    
T  20273366 gaattcatgaatgaagtagtggttctttgtaagcttcaacaccgtaatcttgtaagacttcttggctgctgtactgatggtgatgaaaagatgttgatgt 20273465  T
Q  160 atgagttcatgccaaataaaagtttggatgcattcctctttggttagtt 208  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  20273466 atgagtacatgccaaacaaaagtttggatgcattcatctttggttagtt 20273514  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 40824382 - 40824213
Alignment:
Q  39 tcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaa 138  Q
    ||||| ||||| ||| |||||||||||| ||| |||||||| ||||||| ||| ||||||||||| |||||  |||||||| | || || |||||||||     
T  40824382 tcatccggacagggactagaagaattcaagaatgaagtagttgtgatttgtaagcttcaacatcgcaatcttataagacttattggctgctgtgttgaag 40824283  T
Q  139 gaggagagcaaatgttggtttatgagttcatgccaaataaaagtttggatgcattcctctttggttagtt 208  Q
     ||  ||  | |||||| | || |||| |||||||||||||||||||||||||||  |||||||| ||||    
T  40824282 cagaggaaaagatgttgatatacgagtacatgccaaataaaagtttggatgcatttgtctttggtcagtt 40824213  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 2746020 - 2745857
Alignment:
Q  21 gtgaaaagactctcaaagtcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttc 120  Q
    ||||||||||| |||||| |||||||||| ||  |||||||||| ||||| |||||  | |||||||| || ||||||||||| ||||| || |||||||    
T  2746020 gtgaaaagactttcaaaggcatcaggacaggggttagaagaatttatgaatgaagtgattgtgatttccaagcttcaacatcgcaatcttgttagacttc 2745921  T
Q  121 taggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataaaagttt 184  Q
    |||| |||||  | ||| | | |||  | |||||||| ||||||| |||||| ||||| |||||    
T  2745920 taggctgttgcatcgaaggcgaagaaaagatgttggtctatgagtacatgcctaataacagttt 2745857  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 2713077 - 2712948
Alignment:
Q  55 tagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgtt 154  Q
    |||||||||| |||||||||||  | |||||||| || ||||||||||| ||||| ||||||||||||||||||||  | ||| | | |||  |||||||    
T  2713077 tagaagaatttatgaacgaagtgattgtgatttcaaagcttcaacatcgcaatcttgtaagacttctaggttgttgcatcgaaggggaagaaaaaatgtt 2712978  T
Q  155 ggtttatgagttcatgccaaataaaagttt 184  Q
    ||| ||||| | |||||| ||||| |||||    
T  2712977 ggtctatgaatacatgccgaataatagttt 2712948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 2724190 - 2724027
Alignment:
Q  21 gtgaaaagactctcaaagtcatcaggacaaggaatagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttc 120  Q
    ||||||||||| |||||| | |||||||| ||  |||||||||| ||||| |||||  | |||||||| || ||||||||||| ||||| || ||||||     
T  2724190 gtgaaaagactttcaaaggcttcaggacaggggctagaagaatttatgaatgaagtgattgtgatttccaagcttcaacatcgcaatcttgttagacttt 2724091  T
Q  121 taggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataaaagttt 184  Q
    | || |||||  | ||| | | |||  | |||||||| ||||||| |||||| ||||| |||||    
T  2724090 tgggctgttgcatcgaaggcgaagaaaagatgttggtctatgagtacatgcctaataacagttt 2724027  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 2662894 - 2662798
Alignment:
Q  91 aacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggtttatgagttcatgccaaataaaagtttgga 187  Q
    |||||||||||||||||||||| |  ||||| ||||||||| || || ||| |||  |||||||||| ||||| |  |||||||||| ||| |||||    
T  2662894 aacttcaacatcgaaatctcgtcaagcttcttggttgttgtattcaaggagaagataaaatgttggtctatgaatatatgccaaatagaagcttgga 2662798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 34328539 - 34328657
Alignment:
Q  69 aacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgttggtttatgagttca 168  Q
    |||||||||  | ||||| | ||||||||||| |||||||| ||||  ||||| ||||||||  ||||| |||  ||| ||||| |||||||||| | ||    
T  34328539 aacgaagtaaaattgattgcgaaacttcaacaccgaaatcttgtaaagcttcttggttgttgccttgaaggagaggagaaaatgctggtttatgaataca 34328638  T
Q  169 tgccaaataaaagtttgga 187  Q
    |||| ||||  ||||||||    
T  34328639 tgcctaatagtagtttgga 34328657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 34888795 - 34888753
Alignment:
Q  284 attacacaacaagagtgaagaagataccttagagaacaagcaa 326  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||    
T  34888795 attacacaacaagggtgaagaagataacttggagaacaagcaa 34888753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 2708153 - 2708024
Alignment:
Q  55 tagaagaattcatgaacgaagtagtagtgatttctaaacttcaacatcgaaatctcgtaagacttctaggttgttgtgttgaaagaggagagcaaatgtt 154  Q
    |||||||||| ||||| |||||  | || || || || ||||||||||| ||||| ||||||||||||||||| ||  ||||| | |  ||  | |||||    
T  2708153 tagaagaatttatgaatgaagtgattgttatatcaaagcttcaacatcgcaatcttgtaagacttctaggttgctgcattgaaggggacgaaaagatgtt 2708054  T
Q  155 ggtttatgagttcatgccaaataaaagttt 184  Q
    ||| ||||||| |||||| ||||| |||||    
T  2708053 ggtctatgagtacatgcctaataacagttt 2708024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 407
Target Start/End: Original strand, 15446510 - 15446634
Alignment:
Q  283 tattacacaacaagagtgaagaagataccttagagaacaagcaatctagtttagcttagtaactagtttctttattctactgctatcctatcttagctat 382  Q
    ||||||| || |||||||||| ||||| |||  ||||||||  |  |||||||||||||| | ||||| || |||  || ||  || ||||| ||| |||    
T  15446510 tattacataataagagtgaaggagataacttgcagaacaagttagttagtttagcttagtgattagttactatatgatattgtcattctatcatagttat 15446609  T
Q  383 tgtatgtcttcatttagctatatat 407  Q
    |||||| ||||||||||||||||||    
T  15446610 tgtatgccttcatttagctatatat 15446634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 18737345 - 18737378
Alignment:
Q  309 accttagagaacaagcaatctagtttagcttagt 342  Q
    |||||||||| |||||||||||||||||||||||    
T  18737345 accttagagaccaagcaatctagtttagcttagt 18737378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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