View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18038_low_5 (Length: 403)
Name: NF18038_low_5
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18038_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 21180956 - 21180582
Alignment:
| Q |
17 |
gttaggaggaaagaagtcaagttaccattatttagtcttgtgagcgtttcagcagcaactaataacttttccgatacaaataaacttggcgaaggtggct |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21180956 |
gttaggaggaaagaagtcaagttgccattatttagtcttgtgagcgtttcagcagcaactaataacttttccgatacaaagaaacttggcgaaggtggct |
21180857 |
T |
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| Q |
117 |
ttggacctgtttataaggcatgttctgaagttctttttagaaatattgttaaaacttgcactctttcagaatgctattgatgtagctttgtcgaatcaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21180856 |
ttggacctgtttataaggcatgttctgaagttctttttagaaatattgttaaaacttgcactctttcagaatgctattgatgtagctttgtcgaatcaac |
21180757 |
T |
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| Q |
217 |
aaccatttatacatatttttataggacaaattttcctttccagggtacattattgaatgggggtgaggtcgcgataaaaaggctatctcgaagatcaggt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21180756 |
aaccatttatacatatttttataggacaaattttcctttccagggtacattattgaatgggggtgaggtcgcgataaaaaggctatctcgaatatcaggt |
21180657 |
T |
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| Q |
317 |
caaggatgggaggagttgcgaaatgaagtattgttgattgcaaaactccaacacaataatcttgttagacttctc |
391 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21180656 |
caaggatgggaggagttgcgaaatgaagcattgttgattgcgaaactccaacacaataatcttgttagacttctc |
21180582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 242 - 391
Target Start/End: Original strand, 23189215 - 23189364
Alignment:
| Q |
242 |
acaaattttcctttccagggtacattattgaatgggggtgaggtcgcgataaaaaggctatctcgaagatcaggtcaaggatgggaggagttgcgaaatg |
341 |
Q |
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|||| ||||||||| ||||| | |||||||||||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
23189215 |
acaacttttcctttgcagggcatattattgaatggggatgaggttgctgtaaaaaggctatctcgaagatcgggtcaaggatgggaggagttaagaaatg |
23189314 |
T |
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| Q |
342 |
aagtattgttgattgcaaaactccaacacaataatcttgttagacttctc |
391 |
Q |
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||| |||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
23189315 |
aagcattgttaattgcaaaactccaacataataatcttgttagacttctc |
23189364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 23181653 - 23181788
Alignment:
| Q |
20 |
aggaggaaagaagtcaagttaccattatttagtcttgtgagcgtttcagcagcaactaataacttttccgatacaaataaacttggcgaaggtggctttg |
119 |
Q |
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|||||||||||||||||||| |||||||| ||| ||| || ||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||||| |
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| T |
23181653 |
aggaggaaagaagtcaagttgccattattcagttttgcaagtgtttcagcagcgactaataacttttcagatacaaacaagcttggtgaaggtggctttg |
23181752 |
T |
|
| Q |
120 |
gacctgtttataaggcatgttctgaagttcttttta |
155 |
Q |
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||||||||||||||||| ||||| |||||||||||| |
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| T |
23181753 |
gacctgtttataaggcaagttctaaagttcttttta |
23181788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 23189030 - 23189179
Alignment:
| Q |
20 |
aggaggaaagaagtcaagttaccattatttagtcttgtgagcgtttcagcagcaactaataacttttccgatacaaataaacttggcgaaggtggctttg |
119 |
Q |
| |
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|||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||| |||||||| || ||| |||| || ||||| ||||||||||||| |
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| T |
23189030 |
aggaggaaagaagtcaagttgccattattcagttttgcaagcgtttcagcagcaaccaataacttctcagatgcaaacaagcttggtgaaggtggctttg |
23189129 |
T |
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| Q |
120 |
gacctgtttataaggcatgttctgaagttcttttt-agaaatattgttaa |
168 |
Q |
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||||||||||||||||| ||||| ||||||||||| ||||||||| |||| |
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| T |
23189130 |
gacctgtttataaggcaagttctaaagttctttttaagaaatatttttaa |
23189179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 267 - 391
Target Start/End: Original strand, 23181863 - 23181987
Alignment:
| Q |
267 |
tattgaatgggggtgaggtcgcgataaaaaggctatctcgaagatcaggtcaaggatgggaggagttgcgaaatgaagtattgttgattgcaaaactcca |
366 |
Q |
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|||||||||||| |||||| || | ||||||||||| |||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||| |
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| T |
23181863 |
tattgaatggggatgaggttgctgtgaaaaggctatcccgaagatccggtcaaggatgggaggaattaagaaatgaagcattgttgattgcaaaactcca |
23181962 |
T |
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| Q |
367 |
acacaataatcttgttagacttctc |
391 |
Q |
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|| ||||||||||||||||||||| |
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| T |
23181963 |
gcataataatcttgttagacttctc |
23181987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 23285745 - 23285675
Alignment:
| Q |
311 |
tcaggtcaaggatgggaggagttgcgaaatgaagtattgttgattgcaaaactccaacacaataatcttgt |
381 |
Q |
| |
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|||| |||||||| ||||||||| ||||||||| |||||||||||||||| |||||| ||||||||| |
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| T |
23285745 |
tcagatcaaggattggaggagtttaaaaatgaagttgtgttgattgcaaaacttcaacaccgtaatcttgt |
23285675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 23342073 - 23342033
Alignment:
| Q |
94 |
aaataaacttggcgaaggtggctttggacctgtttataagg |
134 |
Q |
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|||||||||||| |||||||| |||||||| |||||||||| |
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| T |
23342073 |
aaataaacttggggaaggtggatttggaccagtttataagg |
23342033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 23385061 - 23385101
Alignment:
| Q |
94 |
aaataaacttggcgaaggtggctttggacctgtttataagg |
134 |
Q |
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|||||||||||| |||||||| |||||||| |||||||||| |
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| T |
23385061 |
aaataaacttggggaaggtggatttggaccggtttataagg |
23385101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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