View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18038_low_6 (Length: 394)
Name: NF18038_low_6
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18038_low_6 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 44923901 - 44923588
Alignment:
| Q |
1 |
atactattttttggtgtagcnnnnnnnngtaaattccaaaatgcccttacttgatgttagttagcagttttatcaaaaacaaaaatataactcattggca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
44923901 |
atactattttttggtgtagcctttttttgtaaatcccaaaatgcccttatttgatgttagttagcagttttatcaaaaataaaaatataactccttggca |
44923802 |
T |
|
| Q |
101 |
gtagttataacatacatagattttcactttcaaaatggatatgtgaaaaagaagggagaattgcaagacagtaatatgtgagagaagcaccacatcttgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
44923801 |
gtagttataacatacatagattttcactttcaaaatggatatgtgaaaaagaagggagaatagcaagacagtaatatgtgagagaagcaccacatcttgc |
44923702 |
T |
|
| Q |
201 |
caaaaacggcggttacggatcaatcttaccctttgttagtcttttttccgttccattgtccccaaagtaagtttctttctctatgttttttaatgcttac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44923701 |
caaaaacggcggttacggatcaatcttaccctttgttagtcttttttccgttccattgtccccaaagtaagtttctttctctatgttttttaatgcttac |
44923602 |
T |
|
| Q |
301 |
gatcagactacaca |
314 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
44923601 |
gatcaggctacaca |
44923588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 29 - 314
Target Start/End: Complemental strand, 510286 - 510001
Alignment:
| Q |
29 |
gtaaattccaaaatgcccttacttgatgttagttagcagttttatcaaaaacaaaaatataactcattggcagtagttataacatacatagattttcact |
128 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
510286 |
gtaaatcccaaaatgcccttacttgatgttagttagcagttttatcaaaaacaaaaatataactccttggcagtagttataacatacatagattttcact |
510187 |
T |
|
| Q |
129 |
ttcaaaatggatatgtgaaaaagaagggagaattgcaagacagtaatatgtgagagaagcaccacatcttgccaaaaacggcggttacggatcaatctta |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
510186 |
ttcaaaatggatatgtgaaaaagaagggagaatagcaagacagtaatatgtgagagaagcaccacatcttgccaaaaacagcggttacggatcaatctta |
510087 |
T |
|
| Q |
229 |
ccctttgttagtcttttttccgttccattgtccccaaagtaagtttctttctctatgttttttaatgcttacgatcagactacaca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
510086 |
ccctttgttagtcttttttccgttccattgtcctcaaagtaagtttctttctctatgttttttaatgcttacgatcaggctacaca |
510001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 29781157 - 29781467
Alignment:
| Q |
1 |
atactattttttggtgtagcnnnnnnnngtaaattccaaaatgcccttacttgatgttagttagcagttttatcaaaaacaaaaatataactcattggca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
29781157 |
atactattttttggtgtagcctttttttgtaaatcccaaaatgcccttacttgatgttagttagcaattttatcaaaaacaaaaatataactccttggca |
29781256 |
T |
|
| Q |
101 |
gtagttataacatacatagattttcactttcaaaatggatatgtgaaaaagaagggagaattgcaagacagtaatatgtgagagaagcaccacatcttgc |
200 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||||| |
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|
| T |
29781257 |
gcagt-ataacatacatagattttcactttcaaaatggatatgtgaaaaagaagggagaatagcaagataataatatgtgagagaagc--cacatcttgc |
29781353 |
T |
|
| Q |
201 |
caaaaacggcggttacggatcaatcttaccctttgttagtcttttttccgttccattgtccccaaagtaagtttctttctctatgttttttaatgcttac |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29781354 |
caaaaacggcggttacggatcagtcttaccctttgttagtctttttttcgttccattatccccaaactaagtttctttctctatgttttttaatgcttac |
29781453 |
T |
|
| Q |
301 |
gatcagactacaca |
314 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
29781454 |
gatcaggctacaca |
29781467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 314
Target Start/End: Original strand, 8195407 - 8195692
Alignment:
| Q |
29 |
gtaaattccaaaatgcccttacttgatgttagttagcagttttatcaaaaacaaaaatataactcattggcagtagttataacatacatagattttcact |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8195407 |
gtaaatcccaaaatgcccttacttgatgttagtttgcagttttatcaaaaacaaaaatataactccttggcagtagttataacatacatagattttcact |
8195506 |
T |
|
| Q |
129 |
ttcaaaatggatatgtgaaaaagaagggagaattgcaagacagtaatatgtgagagaagcaccacatcttgccaaaaacggcggttacggatcaatctta |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8195507 |
ttcaaaatggatatgtgaaaaagaagggagaatagcaagacagtaatatgtgagagaagcaccacatcttaccaaaaacggcggttacggatcaatctta |
8195606 |
T |
|
| Q |
229 |
ccctttgttagtcttttttccgttccattgtccccaaagtaagtttctttctctatgttttttaatgcttacgatcagactacaca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
8195607 |
ccctttgttagtcttttttccgttccattgtccccaaagtaagtttctttctccatgttttttaatgcttacgatcaggctacaca |
8195692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 314
Target Start/End: Original strand, 1412173 - 1412457
Alignment:
| Q |
30 |
taaattccaaaatgcccttacttgatgttagttagcagttttatcaaaaacaaaaatataactcattggcagtagttataacatacatagattttcactt |
129 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | || |
|
|
| T |
1412173 |
taaatcccaaaatgcctttacttgataatagttagcagttttatcaaaaacaaaaatataactccttggcagcagttataacatacatagatttttattt |
1412272 |
T |
|
| Q |
130 |
tcaaaatggatatgtgaaaaagaagggagaattgcaagacagtaatatgtgagagaagcaccacatcttgccaaaaacggcggttacggatcaatcttac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |
|
|
| T |
1412273 |
tcaaaatggatatgtgaaaaagaagggagaatagcaagacagtaatatgtgagagaagcaccacatcttgccaaaaacggcggtaactaatcagtcttac |
1412372 |
T |
|
| Q |
230 |
cctttgttagtcttttttccgttccattgtccccaaagtaagtttctttctctatgttttttaatgcttacgatcagactacaca |
314 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1412373 |
cctttattagtcttttttccgttccattgtccccaaactaagtttctttctctatgttttttaatgcttacgatcaggctacaca |
1412457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 314
Target Start/End: Complemental strand, 35579445 - 35579161
Alignment:
| Q |
30 |
taaattccaaaatgcccttacttgatgttagttagcagttttatcaaaaacaaaaatataactcattggcagtagttataacatacatagattttcactt |
129 |
Q |
| |
|
||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35579445 |
taaatcccaaaatgctcttatttgatgttagttagcagttttatcaaaaacaaaaatataactccttggcagtagttataacatacatagattttcactt |
35579346 |
T |
|
| Q |
130 |
tcaaaatggatatgtgaaaaagaagggagaattgcaagacagtaatatgtgagagaagcaccacatcttgccaaaaacggcggttacggatcaatcttac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
35579345 |
tcaaaatggatatgtgaaaaagaagggagaatagcaagacagtaatatgtgagagaaacaccacatcttgccaaaaacggcagttacggatcaatattac |
35579246 |
T |
|
| Q |
230 |
cctttgttagtcttttttccgttccattgtccccaaagtaagtttctttctctatgttttttaatgcttacgatcagactacaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
35579245 |
cctttgttagtcttttttccgttccattgtccccaaagtaagtttctttctcaatgttttttaatgcttacgatcaggctacaca |
35579161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 76 - 314
Target Start/End: Original strand, 46120357 - 46120595
Alignment:
| Q |
76 |
aaaacaaaaatataactcattggcagtagttataacatacatagattttcactttcaaaatggatatgtgaaaaagaagggagaattgcaagacagtaat |
175 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
46120357 |
aaaacaaaaatataactccttggcagcagttataacatacatatattttcactttcaaaatggatatgtgaaaaagaagggagaatagcgagacagtaat |
46120456 |
T |
|
| Q |
176 |
atgtgagagaagcaccacatcttgccaaaaacggcggttacggatcaatcttaccctttgttagtcttttttccgttccattgtccccaaagtaagtttc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46120457 |
atgtgagagaagcaccacatcttgccaaaaacggcagtaacggatcagtcttaccctttgttagtcttttttccgttccattgtccccaaactaagtttc |
46120556 |
T |
|
| Q |
276 |
tttctctatgttttttaatgcttacgatcagactacaca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46120557 |
tttctctatgttttttaatgcttacgatcaggctacaca |
46120595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 46119714 - 46119769
Alignment:
| Q |
29 |
gtaaattccaaaatgcccttacttgatgttagttagcagttttatcaaaaacaaaa |
84 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46119714 |
gtaaatcccaaaatgcccttacttgatgttagttagcagttttatcaaaaacaaaa |
46119769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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