View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18038_low_8 (Length: 376)
Name: NF18038_low_8
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18038_low_8 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 78 - 327
Target Start/End: Complemental strand, 3475 - 3227
Alignment:
| Q |
78 |
taagagttgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagcaccatatgcatgat |
177 |
Q |
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| T |
3475 |
taagaattgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagcaccatatgcatgat |
3376 |
T |
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| Q |
178 |
tcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaattgttcgaatattttnnnnnnnttatgtaatagaatggaag |
277 |
Q |
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| T |
3375 |
tcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaactgtttgaatatttt-aaaaaattatgtaatagaatggaaa |
3277 |
T |
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| Q |
278 |
tgatgacattattccatctcatactatttttcattaaaatttcaccataa |
327 |
Q |
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| T |
3276 |
tgatgacattattccatctcatactatttttcattaaaatttcaccataa |
3227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 78 - 327
Target Start/End: Original strand, 10043595 - 10043843
Alignment:
| Q |
78 |
taagagttgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagcaccatatgcatgat |
177 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10043595 |
taagaattgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagcaccatatgcatgat |
10043694 |
T |
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| Q |
178 |
tcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaattgttcgaatattttnnnnnnnttatgtaatagaatggaag |
277 |
Q |
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| T |
10043695 |
tcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaactgtttgaatatttt-aaaaaattatgtaatagaatggaaa |
10043793 |
T |
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| Q |
278 |
tgatgacattattccatctcatactatttttcattaaaatttcaccataa |
327 |
Q |
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| T |
10043794 |
tgatgacattattccatctcatactatttttcattaaaatttcaccataa |
10043843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 78 - 327
Target Start/End: Original strand, 10105309 - 10105557
Alignment:
| Q |
78 |
taagagttgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagcaccatatgcatgat |
177 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10105309 |
taagaattgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagcaccatatgcatgat |
10105408 |
T |
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| Q |
178 |
tcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaattgttcgaatattttnnnnnnnttatgtaatagaatggaag |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| |
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| T |
10105409 |
tcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaactgtttgaatatttt-aaaaaattatgtaatagaatggaaa |
10105507 |
T |
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| Q |
278 |
tgatgacattattccatctcatactatttttcattaaaatttcaccataa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10105508 |
tgatgacattattccatctcatactatttttcattaaaatttcaccataa |
10105557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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