View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18038_low_9 (Length: 326)
Name: NF18038_low_9
Description: NF18038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18038_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 1785323 - 1785011
Alignment:
| Q |
1 |
caaatcacaaagagacaccacatctattgatnnnnnnn-ccactattatgagacaccacaacttcaccaaaaatcttaaggtattaattaagtatacgag |
99 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
1785323 |
caaatcacaaagagacaccacatctattgataaaaaaaaccactattatgagacaccacagcttcaccaaaaatcttaaggtattaattaaatatacgag |
1785224 |
T |
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| Q |
100 |
tcatttctcctaatttttagtcgatctgagacgaatcactcacacttaaattctaactatttccaccgccgttacaaaccaacggaaacaaaacatatca |
199 |
Q |
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|||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
1785223 |
tcatttctcctaattttttgtcgatctaggacgaattactcacacttaaattccaactatttgcaccgccgttacaaaccaacggaaacaaaacatgtca |
1785124 |
T |
|
| Q |
200 |
cctgactccattaccaataataatacctttgatacaaggatccatcatatctagattcactcccgctccccatccagctgagcaagggctctgataccac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1785123 |
cctgactccattaccaataataatacctttgatacaaggatccatcatatctagattcactcccgctccccatccaactgagcaagggctctgataccac |
1785024 |
T |
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| Q |
300 |
ttgttgagaagtc |
312 |
Q |
| |
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||||||||||||| |
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| T |
1785023 |
ttgttgagaagtc |
1785011 |
T |
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