View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18039_high_12 (Length: 254)
Name: NF18039_high_12
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18039_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 53 - 242
Target Start/End: Complemental strand, 15996720 - 15996531
Alignment:
| Q |
53 |
cctaagggcacaagttaacatgacccataaaatgaatagaaaaatatgttttttaatgacagtaccactattataaaaaataagtaccaaactaccacac |
152 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15996720 |
cctaaaggcacaagttaacatgacctataaaatgaatacaaaaatatgttttttaatgacagtaccactattataaaaaataagtaccaaactaccacac |
15996621 |
T |
|
| Q |
153 |
ctttagaattaagggaaccgattgttaccacgaaaagttgattcacgagctaattacggacctttgatttcaattctctccctctctgat |
242 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
15996620 |
ctttagaactaagggaaacgattgttaccacgaaaagttgattcacgggctaattacgggcctttgatttcaattctctccctccctgat |
15996531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 85
Target Start/End: Original strand, 28945979 - 28946009
Alignment:
| Q |
55 |
taagggcacaagttaacatgacccataaaat |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28945979 |
taagggcacaagttaacatgacccataaaat |
28946009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 50129187 - 50129224
Alignment:
| Q |
53 |
cctaagggcacaagttaacatgacccataaaatgaata |
90 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
50129187 |
cctaagggcacaagttaacatgacccatataataaata |
50129224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 37238784 - 37238752
Alignment:
| Q |
53 |
cctaagggcacaagttaacatgacccataaaat |
85 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
37238784 |
cctaagggcacaagttaacatgacccttaaaat |
37238752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 82
Target Start/End: Original strand, 9399672 - 9399701
Alignment:
| Q |
53 |
cctaagggcacaagttaacatgacccataa |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9399672 |
cctaagggcacaagttaacatgacccataa |
9399701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 24393632 - 24393660
Alignment:
| Q |
53 |
cctaagggcacaagttaacatgacccata |
81 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24393632 |
cctaagggcacaagttaacatgacccata |
24393660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University