View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18039_high_17 (Length: 233)
Name: NF18039_high_17
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18039_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 8533370 - 8533569
Alignment:
| Q |
16 |
aagaatcatattaaatgtctgaacattaggttccagaccattgttcttcatctggtcatacaatgttcgagcctctaaagttcttccacttctaagatgc |
115 |
Q |
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| T |
8533370 |
aagaatcatattaaatgtctgaaaattaggttccagaccatttttcttcatctggtcatacaatgttctggcctctaaagttcttccacttctaagatgt |
8533469 |
T |
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| Q |
116 |
gcatcgatgccaacaccatatgctaaactgtcaagaggatatttcttaagtgcttcggatataaaaacatcagaagcctgttgataatgaccagtctttt |
215 |
Q |
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| T |
8533470 |
gcatcgatgccaacaccatatgctatactgtcaagaggatatttcttaactgcttcggatataaaaacatcagaagcctgttcatactgaccagcctttt |
8533569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 975002 - 975101
Alignment:
| Q |
16 |
aagaatcatattaaatgtctgaacattaggttccagaccattgttcttcatctggtcatacaatgttcgagcctctaaagttcttccacttctaagatgc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
975002 |
aagaatcatattaaatgtctgaacattaggttccagaccattgttcttcatctggtcatacaatgttcgggcctctaaagttcttccacttctaagatgc |
975101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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