View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18039_high_2 (Length: 530)

Name: NF18039_high_2
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18039_high_2
NF18039_high_2
[»] chr4 (7 HSPs)
chr4 (3-519)||(10111424-10111937)
chr4 (371-515)||(40002117-40002261)
chr4 (371-515)||(13698386-13698530)
chr4 (371-515)||(21301908-21302052)
chr4 (371-515)||(54346251-54346395)
chr4 (371-515)||(8982360-8982504)
chr4 (377-515)||(36357195-36357333)
[»] scaffold0011 (1 HSPs)
scaffold0011 (371-518)||(4914-5061)
[»] chr5 (5 HSPs)
chr5 (371-518)||(13584789-13584936)
chr5 (371-515)||(41856467-41856612)
chr5 (371-515)||(24773432-24773576)
chr5 (371-515)||(42022860-42023005)
chr5 (371-515)||(17507950-17508093)
[»] chr8 (4 HSPs)
chr8 (371-518)||(19433322-19433469)
chr8 (371-518)||(19569472-19569619)
chr8 (371-515)||(21646157-21646301)
chr8 (371-515)||(32013574-32013718)
[»] chr6 (3 HSPs)
chr6 (371-517)||(17284919-17285064)
chr6 (371-519)||(10491015-10491163)
chr6 (371-515)||(22700321-22700465)
[»] scaffold0517 (1 HSPs)
scaffold0517 (371-515)||(1439-1583)
[»] scaffold0166 (1 HSPs)
scaffold0166 (371-515)||(15816-15960)
[»] scaffold0165 (1 HSPs)
scaffold0165 (371-515)||(14861-15005)
[»] scaffold0014 (1 HSPs)
scaffold0014 (371-515)||(29421-29565)
[»] chr7 (4 HSPs)
chr7 (371-515)||(33241051-33241195)
chr7 (371-515)||(47996848-47996992)
chr7 (371-421)||(17498785-17498835)
chr7 (371-421)||(17554379-17554429)
[»] chr3 (5 HSPs)
chr3 (371-515)||(3479022-3479166)
chr3 (371-515)||(15765094-15765238)
chr3 (371-515)||(17361953-17362097)
chr3 (371-515)||(17366595-17366739)
chr3 (371-515)||(20092725-20092869)
[»] chr2 (4 HSPs)
chr2 (371-515)||(42725523-42725667)
chr2 (371-515)||(44756675-44756819)
chr2 (374-515)||(40035834-40035975)
chr2 (438-515)||(27568706-27568786)
[»] chr1 (3 HSPs)
chr1 (371-515)||(27714319-27714463)
chr1 (371-515)||(37406491-37406635)
chr1 (371-515)||(5727993-5728137)


Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 3 - 519
Target Start/End: Original strand, 10111424 - 10111937
Alignment:
Q  3 cacagttatttctttgaaggctagcacggaatgagatagatttcatttgtttcatgtgtgctaagctaggttaaaatgaagaatctcaagccaataattt 102  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  10111424 cacaattatttctttgaaggctagcacggaatgaaatagatttcatttgtttcatgtgtgccaagctaggttaaaatgaagaatctcaagccaatcattt 10111523  T
Q  103 gtaaaagattttgtgtttgctttgtgttgaactaataaagcatcggaatttgaggatata-tactcttggtcgttgtttatgatttggttgcaaggtatt 201  Q
    |||||| | |||||||||||||||| |||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10111524 gtaaaaaactttgtgtttgctttgtcttgaactaa---agcatcggaatttgaggatataatactcttggtcgttgtttatgatttggttgcaaggtatt 10111620  T
Q  202 catttattgcttatcattgtgttggtaagttgaaatttcttatgtaacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 301  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111621 catttattgcttatcattgtgttggcaagttgaaatttcttatgtcacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 10111720  T
Q  302 taattaaagacattagtaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttagttttgggtactctgtttagcacata 401  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10111721 taattaaagacagcagtaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttagtttttggtactctgtttagcacata 10111820  T
Q  402 gctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaatttggtaaaggttcgattttttctttcg 501  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||     
T  10111821 gctaacagtcaatgaaattt-tccccaccaatgaggcgctgcatcagaattaagcatgatagcaactactaatttgataaaggtttgattttttctttcc 10111919  T
Q  502 gctttaccgttcatctca 519  Q
    ||||||||||||||||||    
T  10111920 gctttaccgttcatctca 10111937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 40002117 - 40002261
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  40002117 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 40002216  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||    
T  40002217 taattcggtaaaggttctattttttctttccgctttaccgttcat 40002261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 13698386 - 13698530
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  13698386 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 13698485  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  13698486 taattcggtaaacgttctattttttctttccgctttaccgttcat 13698530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 21302052 - 21301908
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  21302052 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 21301953  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  21301952 taattcggtaaacgttctattttttctttccgctttaccgttcat 21301908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 54346251 - 54346395
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  54346251 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 54346350  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  54346351 taattcggtaaacgttctattttttctttccgctttaccgttcat 54346395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 8982504 - 8982360
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||| ||||||||||||||  | |||||||||||  | ||||||||    
T  8982504 tctttgttttgggtactctgtttagaacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac 8982405  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  8982404 taattcggtaaacgttctattttttctttccgctttaccgttcat 8982360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 377 - 515
Target Start/End: Original strand, 36357195 - 36357333
Alignment:
Q  377 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaattt 476  Q
    ||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| |  |||||||||||  | |||||||||||||     
T  36357195 ttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctctggaattaagcattgttgcaactactaattc 36357294  T
Q  477 ggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    |||||| |||| |||||||||||| ||||||||||||||    
T  36357295 ggtaaacgttctattttttctttccgctttaccgttcat 36357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 371 - 518
Target Start/End: Original strand, 4914 - 5061
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4914 tcttagtcttgggtactccgtttagcacatagctaacagtcaataaaatttccccccacaaatgaggcgctgcaccagaattaagcatgatagcaactac 5013  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 518  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  5014 taattcggtaaaggttcgattttttctttccgctttaccgttcatctc 5061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 371 - 518
Target Start/End: Complemental strand, 13584936 - 13584789
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13584936 tcttcgttttgggtactctgtttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccagaattaagcatgatagcaactac 13584837  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 518  Q
    || || ||||||||||||||| |||||||| |||||||||||||||||    
T  13584836 tagttcggtaaaggttcgattctttctttccgctttaccgttcatctc 13584789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 41856467 - 41856612
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||  | ||||||||    
T  41856467 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccagaattaagcattgttgcaactac 41856566  T
Q  471 taatttggtaaaggttcga-ttttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||||||    
T  41856567 taattcggtaaacgttctatttttttctttccgctttaccgttcat 41856612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 24773576 - 24773432
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  24773576 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 24773477  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||  ||||||||||||||    
T  24773476 taattcggtaaacgttctattttttcttttcgctttaccgttcat 24773432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 42022860 - 42023005
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  42022860 tctttgttttgggtactgtgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 42022959  T
Q  471 taatttggtaaaggttcga-ttttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||||||    
T  42022960 taattcggtaaacgttctatttttttctttccgctttaccgttcat 42023005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 17507950 - 17508093
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||  ||||||||||  | ||||||||    
T  17507950 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccgaaattaagcattgttgcaactac 17508049  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||| | |||||| |||| | |||||||||| ||||||||||||||    
T  17508050 taactcggtaaacgttcta-tttttctttccgctttaccgttcat 17508093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 371 - 518
Target Start/End: Original strand, 19433322 - 19433469
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||    
T  19433322 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac 19433421  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 518  Q
    ||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  19433422 taattcggtaaaagttcgattctttctttccgctttaccgttcatctc 19433469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 371 - 518
Target Start/End: Original strand, 19569472 - 19569619
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||    
T  19569472 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac 19569571  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 518  Q
    ||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  19569572 taattcggtaaaagttcgattctttctttccgctttaccgttcatctc 19569619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 21646301 - 21646157
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  21646301 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 21646202  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  21646201 taattcggtaaacgttctattttttctttccgctttaccgttcat 21646157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 32013574 - 32013718
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  32013574 tctttgttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 32013673  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  32013674 taattcggtaaatgttctattttttctttccgctttaccgttcat 32013718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 9e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 371 - 517
Target Start/End: Complemental strand, 17285064 - 17284919
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  17285064 tcttagttttgggcagtctgtttagcacatagctaacagtcaataaaatttccccc-accaatgaggcgctgcaccagaattaagcatgatagcacctac 17284966  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcatct 517  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  17284965 taattcggtaaaggttcgattttttctttccgctttaccgttcatct 17284919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 371 - 519
Target Start/End: Original strand, 10491015 - 10491163
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  10491015 tcttagttttgggtgctccatttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccataattaagcatgatagcaactac 10491114  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcatctca 519  Q
    ||||| |||||| ||||||||||||||||  |||||| |||||||||||    
T  10491115 taattcggtaaaagttcgattttttcttttcgctttatcgttcatctca 10491163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 22700465 - 22700321
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  22700465 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 22700366  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  22700365 taattcggtaaacgttctattttttctttccgctttaccgttcat 22700321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 1439 - 1583
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  1439 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 1538  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  1539 taattcggtaaacgttctattttttctttccgctttaccgttcat 1583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 15960 - 15816
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  15960 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 15861  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  15860 taattcggtaaacgttctattttttctttccgctttaccgttcat 15816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 14861 - 15005
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  14861 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 14960  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  14961 taattcggtaaacgttctattttttctttccgctttaccgttcat 15005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 29421 - 29565
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  29421 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 29520  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  29521 taattcggtaaacgttctattttttctttccgctttaccgttcat 29565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 33241051 - 33241195
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  33241051 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 33241150  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  33241151 taattcggtaaacgttctattttttctttccgctttaccgttcat 33241195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 47996848 - 47996992
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  47996848 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 47996947  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  47996948 taattcggtaaacgttctattttttctttccgctttaccgttcat 47996992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 17498785 - 17498835
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt 421  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  17498785 tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17498835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 17554429 - 17554379
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt 421  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  17554429 tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17554379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 3479166 - 3479022
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  3479166 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 3479067  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  3479066 taattcggtaaacgttctattttttctttccgctttaccgttcat 3479022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 15765238 - 15765094
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  15765238 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 15765139  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  15765138 taattcggtaaacgttctattttttctttccgctttaccgttcat 15765094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 17361953 - 17362097
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  17361953 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 17362052  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  17362053 taattcggtaaacgttctattttttctttccgctttaccgttcat 17362097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 17366595 - 17366739
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  17366595 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 17366694  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  17366695 taattcggtaaacgttctattttttctttccgctttaccgttcat 17366739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 20092869 - 20092725
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  20092869 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 20092770  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  20092769 taattcggtaaacgttctattttttctttccgctttaccgttcat 20092725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 42725667 - 42725523
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  42725667 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 42725568  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  42725567 taattcggtaaacgttctattttttctttccgctttaccgttcat 42725523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 44756819 - 44756675
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  44756819 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 44756720  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  44756719 taattcggtaaacgttctattttttctttccgctttaccgttcat 44756675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 374 - 515
Target Start/End: Complemental strand, 40035975 - 40035834
Alignment:
Q  374 tagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaa 473  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||| ||| | |||||||||| |||||   |||||||||||||| ||||||||||    
T  40035975 tagttttgggtactctgtttagcacatggaaaacaatcaataaaatttctcccgaccaatgaggcgatgcactgaaattaagcatgataacaactactaa 40035876  T
Q  474 tttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    || ||||||||||| |||||||||||| ||| |||| |||||    
T  40035875 ttcggtaaaggttctattttttctttcagctctacctttcat 40035834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 515
Target Start/End: Original strand, 27568706 - 27568786
Alignment:
Q  438 cgctgcaccagaattaagcatgatagcaactactaatttggtaaaggttcga---ttttttctttcggctttaccgttcat 515  Q
    ||||||| | |||||||||||||||||||||| ||||| ||||||||||  |   |||||||| || ||||||||||||||    
T  27568706 cgctgcaacggaattaagcatgatagcaactaataattcggtaaaggttatatttttttttctctccgctttaccgttcat 27568786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 27714319 - 27714463
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  27714319 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 27714418  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  27714419 taattcggtaaacgttctattttttctttccgctttaccgttcat 27714463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 37406635 - 37406491
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||  | |||||||||||  | ||||||||    
T  37406635 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac 37406536  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  37406535 taattcggtaaacgttctattttttctttctgctttaccgttcat 37406491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 5727993 - 5728137
Alignment:
Q  371 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 470  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  5727993 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 5728092  T
Q  471 taatttggtaaaggttcgattttttctttcggctttaccgttcat 515  Q
    ||||| | ||||  ||| |||||||||||| ||||||||||||||    
T  5728093 taattcgataaacattctattttttctttccgctttaccgttcat 5728137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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