View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18039_high_7 (Length: 418)

Name: NF18039_high_7
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18039_high_7
NF18039_high_7
[»] chr3 (46 HSPs)
chr3 (145-311)||(375735-375899)
chr3 (140-208)||(9588856-9588924)
chr3 (148-208)||(15638424-15638484)
chr3 (148-208)||(3751554-3751614)
chr3 (148-204)||(6512499-6512555)
chr3 (239-303)||(23272051-23272115)
chr3 (219-310)||(25841940-25842029)
chr3 (226-288)||(7259718-7259778)
chr3 (229-310)||(19234007-19234086)
chr3 (221-306)||(25342386-25342469)
chr3 (224-288)||(633295-633357)
chr3 (1-44)||(375995-376038)
chr3 (146-208)||(7259623-7259685)
chr3 (159-208)||(37030921-37030970)
chr3 (160-306)||(5493547-5493693)
chr3 (151-207)||(6472670-6472726)
chr3 (219-310)||(9588735-9588824)
chr3 (247-303)||(20141042-20141098)
chr3 (245-309)||(27264104-27264168)
chr3 (1-44)||(6749236-6749279)
chr3 (145-208)||(38751023-38751086)
chr3 (1-39)||(6472524-6472562)
chr3 (219-276)||(21934489-21934544)
chr3 (1-39)||(38750886-38750924)
chr3 (225-310)||(45759965-45760048)
chr3 (148-208)||(296546-296604)
chr3 (239-288)||(1272438-1272487)
chr3 (159-208)||(2599148-2599197)
chr3 (161-306)||(45646594-45646738)
chr3 (224-310)||(296424-296509)
chr3 (219-306)||(19578326-19578411)
chr3 (148-274)||(23720335-23720461)
chr3 (148-274)||(23738791-23738917)
chr3 (161-208)||(2093873-2093920)
chr3 (163-206)||(12568520-12568563)
chr3 (163-206)||(13544984-13545027)
chr3 (148-282)||(23772176-23772312)
chr3 (1-44)||(45759721-45759764)
chr3 (5-39)||(21915701-21915735)
chr3 (148-197)||(6749087-6749136)
chr3 (159-208)||(20841405-20841454)
chr3 (1-38)||(21934326-21934363)
chr3 (224-306)||(20841315-20841393)
chr3 (140-208)||(21959634-21959702)
chr3 (148-208)||(23701880-23701940)
chr3 (256-304)||(27817413-27817460)
[»] chr5 (36 HSPs)
chr5 (155-310)||(16365723-16365875)
chr5 (224-310)||(17201218-17201302)
chr5 (159-306)||(8544685-8544823)
chr5 (219-288)||(14654941-14655008)
chr5 (155-305)||(32717924-32718072)
chr5 (152-306)||(39614828-39614983)
chr5 (148-306)||(19931832-19931982)
chr5 (159-306)||(1583455-1583597)
chr5 (219-288)||(1590163-1590230)
chr5 (219-288)||(19924901-19924967)
chr5 (159-208)||(6428326-6428375)
chr5 (159-208)||(17201328-17201377)
chr5 (245-309)||(13220066-13220130)
chr5 (219-310)||(17202834-17202923)
chr5 (145-200)||(43346608-43346663)
chr5 (1-39)||(249319-249357)
chr5 (219-288)||(19922151-19922217)
chr5 (145-208)||(249456-249516)
chr5 (140-181)||(14967651-14967692)
chr5 (159-208)||(18413316-18413365)
chr5 (156-205)||(20201754-20201803)
chr5 (159-208)||(42674027-42674076)
chr5 (4-39)||(8544536-8544571)
chr5 (245-288)||(12436763-12436806)
chr5 (161-208)||(17202341-17202388)
chr5 (224-274)||(20201664-20201712)
chr5 (159-206)||(32474288-32474335)
chr5 (224-273)||(249553-249600)
chr5 (227-276)||(11825447-11825494)
chr5 (260-310)||(17557948-17557998)
chr5 (245-298)||(36437372-36437426)
chr5 (219-280)||(39584844-39584903)
chr5 (1-39)||(43346471-43346509)
chr5 (219-286)||(11992224-11992289)
chr5 (160-208)||(36437297-36437345)
chr5 (145-173)||(39888589-39888617)
[»] chr8 (32 HSPs)
chr8 (140-208)||(1358819-1358887)
chr8 (140-208)||(34038981-34039049)
chr8 (224-307)||(32233623-32233705)
chr8 (225-309)||(45083036-45083118)
chr8 (219-298)||(27231777-27231854)
chr8 (219-306)||(34146179-34146264)
chr8 (224-310)||(4418562-4418645)
chr8 (239-310)||(7578229-7578300)
chr8 (219-288)||(9455248-9455315)
chr8 (235-308)||(14896623-14896694)
chr8 (219-284)||(38457289-38457352)
chr8 (224-288)||(5870769-5870831)
chr8 (161-288)||(16393718-16393842)
chr8 (219-306)||(39628293-39628379)
chr8 (219-306)||(39637843-39637929)
chr8 (140-204)||(16599268-16599332)
chr8 (160-310)||(25496641-25496788)
chr8 (145-208)||(3741747-3741810)
chr8 (149-281)||(29315806-29315934)
chr8 (219-288)||(2742941-2743008)
chr8 (224-281)||(3741656-3741711)
chr8 (247-305)||(38401563-38401621)
chr8 (245-306)||(1530622-1530683)
chr8 (224-284)||(16599386-16599444)
chr8 (140-208)||(3443631-3443699)
chr8 (219-310)||(25400462-25400551)
chr8 (4-39)||(3741908-3741943)
chr8 (224-306)||(7695303-7695383)
chr8 (1-39)||(36682796-36682834)
chr8 (247-288)||(30887895-30887936)
chr8 (148-208)||(4418824-4418884)
chr8 (160-208)||(11087222-11087270)
[»] chr2 (39 HSPs)
chr2 (224-307)||(4316692-4316773)
chr2 (148-298)||(41541048-41541199)
chr2 (239-310)||(42756782-42756853)
chr2 (148-288)||(44898124-44898263)
chr2 (219-313)||(20171448-20171540)
chr2 (229-310)||(32113373-32113452)
chr2 (141-310)||(33659694-33659860)
chr2 (159-288)||(45273364-45273491)
chr2 (145-208)||(4316802-4316865)
chr2 (219-308)||(11083896-11083983)
chr2 (224-309)||(36244050-36244133)
chr2 (153-310)||(15507442-15507599)
chr2 (148-208)||(158006-158066)
chr2 (219-282)||(158100-158161)
chr2 (140-208)||(11084013-11084080)
chr2 (140-208)||(27746582-27746650)
chr2 (148-201)||(42872200-42872253)
chr2 (223-298)||(4700974-4701047)
chr2 (224-306)||(21252576-21252656)
chr2 (227-309)||(33659550-33659630)
chr2 (149-208)||(34424692-34424751)
chr2 (1-39)||(20171229-20171267)
chr2 (158-208)||(25965802-25965852)
chr2 (1-39)||(36243816-36243854)
chr2 (224-276)||(7486330-7486380)
chr2 (159-208)||(16806503-16806552)
chr2 (159-208)||(16845784-16845833)
chr2 (226-310)||(27746459-27746541)
chr2 (219-298)||(1770188-1770265)
chr2 (219-288)||(150288-150353)
chr2 (149-200)||(4959298-4959349)
chr2 (224-310)||(4959395-4959479)
chr2 (1-44)||(25714153-25714196)
chr2 (1-35)||(4316914-4316948)
chr2 (219-288)||(29408800-29408867)
chr2 (159-204)||(11073881-11073926)
chr2 (148-181)||(33024374-33024407)
chr2 (224-288)||(38589315-38589377)
chr2 (4-44)||(33659957-33659997)
[»] chr6 (22 HSPs)
chr6 (140-310)||(7972565-7972730)
chr6 (219-310)||(9095778-9095867)
chr6 (140-208)||(8460948-8461016)
chr6 (220-310)||(2437845-2437933)
chr6 (224-310)||(25056482-25056566)
chr6 (150-207)||(23410573-23410630)
chr6 (154-309)||(4665871-4666028)
chr6 (245-306)||(14093819-14093880)
chr6 (140-208)||(21527231-21527299)
chr6 (149-208)||(6111041-6111100)
chr6 (159-288)||(8049193-8049318)
chr6 (149-208)||(9095684-9095743)
chr6 (219-284)||(6111132-6111195)
chr6 (159-208)||(25056591-25056640)
chr6 (219-310)||(21527333-21527422)
chr6 (160-208)||(4184770-4184818)
chr6 (219-298)||(34889065-34889142)
chr6 (1-44)||(9353337-9353380)
chr6 (1-39)||(23410740-23410778)
chr6 (219-276)||(26252600-26252655)
chr6 (245-282)||(9353140-9353177)
chr6 (144-181)||(31871714-31871751)
[»] chr7 (30 HSPs)
chr7 (162-307)||(35793061-35793204)
chr7 (149-310)||(4962870-4963033)
chr7 (219-305)||(2273520-2273604)
chr7 (140-309)||(25290611-25290782)
chr7 (224-304)||(28226544-28226622)
chr7 (219-286)||(2798619-2798684)
chr7 (224-288)||(10026227-10026291)
chr7 (219-298)||(39430609-39430686)
chr7 (159-208)||(3835594-3835643)
chr7 (224-284)||(15643351-15643409)
chr7 (148-204)||(17269571-17269625)
chr7 (159-288)||(4567328-4567451)
chr7 (160-208)||(12394239-12394287)
chr7 (169-208)||(2271863-2271902)
chr7 (247-305)||(10535042-10535100)
chr7 (224-305)||(37124169-37124248)
chr7 (159-208)||(8614780-8614829)
chr7 (162-281)||(16196804-16196919)
chr7 (224-288)||(43368797-43368859)
chr7 (3-39)||(12394395-12394431)
chr7 (160-208)||(14771361-14771409)
chr7 (160-208)||(15221813-15221861)
chr7 (148-208)||(15643449-15643509)
chr7 (219-276)||(39427425-39427481)
chr7 (224-269)||(4678434-4678477)
chr7 (260-310)||(14771456-14771506)
chr7 (260-310)||(15221908-15221958)
chr7 (1-39)||(29664536-29664574)
chr7 (159-208)||(10534959-10535008)
chr7 (224-288)||(39432604-39432666)
[»] chr4 (32 HSPs)
chr4 (219-310)||(24538312-24538401)
chr4 (148-208)||(53370311-53370371)
chr4 (219-305)||(25490459-25490543)
chr4 (149-208)||(30913637-30913696)
chr4 (224-288)||(45635465-45635527)
chr4 (219-310)||(37209992-37210081)
chr4 (219-288)||(25493839-25493906)
chr4 (163-305)||(54982705-54982846)
chr4 (245-306)||(6949087-6949148)
chr4 (148-204)||(30912714-30912770)
chr4 (245-309)||(50720892-50720956)
chr4 (245-288)||(9089646-9089689)
chr4 (161-208)||(38840364-38840411)
chr4 (219-276)||(668035-668090)
chr4 (224-281)||(33889622-33889677)
chr4 (219-306)||(23529510-23529596)
chr4 (159-208)||(25493924-25493973)
chr4 (224-284)||(38434248-38434306)
chr4 (159-208)||(53393438-53393487)
chr4 (149-208)||(24538220-24538279)
chr4 (165-208)||(37209934-37209977)
chr4 (161-208)||(45666417-45666464)
chr4 (159-282)||(2492863-2492983)
chr4 (256-310)||(21342252-21342306)
chr4 (248-306)||(21956513-21956571)
chr4 (247-305)||(24074145-24074203)
chr4 (256-310)||(37371447-37371501)
chr4 (247-311)||(46196827-46196892)
chr4 (247-284)||(49263014-49263051)
chr4 (160-208)||(6949223-6949271)
chr4 (164-208)||(19443501-19443545)
chr4 (224-288)||(46016598-46016662)
[»] chr1 (27 HSPs)
chr1 (219-288)||(1674777-1674844)
chr1 (225-306)||(36319983-36320062)
chr1 (219-311)||(788293-788383)
chr1 (224-288)||(2655726-2655788)
chr1 (145-276)||(52414965-52415092)
chr1 (148-208)||(4395994-4396054)
chr1 (224-306)||(13254772-13254852)
chr1 (224-288)||(11238258-11238320)
chr1 (159-208)||(39386782-39386831)
chr1 (224-275)||(23699441-23699490)
chr1 (149-196)||(1394781-1394828)
chr1 (245-288)||(21535849-21535892)
chr1 (224-314)||(43021120-43021208)
chr1 (227-288)||(10430538-10430597)
chr1 (248-310)||(23698755-23698817)
chr1 (146-204)||(37710398-37710456)
chr1 (1-43)||(40519011-40519053)
chr1 (219-276)||(40519207-40519262)
chr1 (155-208)||(788205-788258)
chr1 (140-200)||(1674694-1674754)
chr1 (161-306)||(6295699-6295840)
chr1 (148-208)||(19269825-19269885)
chr1 (1-44)||(1674563-1674606)
chr1 (219-276)||(4671443-4671498)
chr1 (219-284)||(10101679-10101741)
chr1 (5-39)||(23699203-23699237)
chr1 (219-284)||(31623119-31623182)
[»] scaffold1130 (1 HSPs)
scaffold1130 (149-288)||(399-530)
[»] scaffold0118 (2 HSPs)
scaffold0118 (224-310)||(14911-14994)
scaffold0118 (148-208)||(15171-15231)
[»] scaffold0005 (1 HSPs)
scaffold0005 (224-314)||(256732-256820)
[»] scaffold0188 (2 HSPs)
scaffold0188 (148-204)||(6349-6405)
scaffold0188 (224-310)||(6403-6487)
[»] scaffold0006 (1 HSPs)
scaffold0006 (140-288)||(46510-46650)
[»] scaffold0841 (1 HSPs)
scaffold0841 (1-44)||(4477-4520)
[»] scaffold0242 (2 HSPs)
scaffold0242 (145-205)||(14895-14955)
scaffold0242 (145-205)||(23730-23790)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 145 - 311
Target Start/End: Complemental strand, 375899 - 375735
Alignment:
Q  145 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||| ||||||||||||||||    
T  375899 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttaaaaaaaa--caaaatttaattttccaaatatataa 375802  T
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatact 311  Q
    ||||||||||  ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||    
T  375801 agcattaattaattttattaaaaaagataagagtaattgacaaaagatataattaacaaatcatact 375735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 9588924 - 9588856
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  9588924 catgaaatcattattataggtaacaaagttttgtttaaattttaagataacaagaaacaaactttgttt 9588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 15638424 - 15638484
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  15638424 cattattataggtaacaaaattttgtttgaattttaagataacaagaaacaaactttgttt 15638484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 3751614 - 3751554
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||    
T  3751614 cattattataggtaagaaaattttgtttaaatttaaagataacaagaaacaaactttgttt 3751554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 6512499 - 6512555
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 204  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  6512499 cattattataggtaacaaaattttgtataaatttgaggataacaagaaacaaacttt 6512555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 23272115 - 23272051
Alignment:
Q  239 atataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaa 303  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||    
T  23272115 atatatagcattaatttgttttattgaaaaagataagaataattgagaaaatgtataattgacaa 23272051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 25841940 - 25842029
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||||| |||||| |||||||||||   ||| ||| |||||||||||    
T  25841940 caaattttagttttccaaatatata--gcattaattagttttattgaaaaatataagattaattgacaaagggtatgattgacaaatcatac 25842029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 7259718 - 7259778
Alignment:
Q  226 tagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    ||||||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||    
T  7259718 tagttttccaaatatata--gcattaattagttttattgaaaaatataagaataattgacaaa 7259778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 19234007 - 19234086
Alignment:
Q  229 ttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||| |||||||||||   ||||||| | |||||||||    
T  19234007 ttttccaaatatata--gcattaattttttttattgaaaaagataagagtaattgacaaagggtataattgaaaaatcatac 19234086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 25342386 - 25342469
Alignment:
Q  221 aaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||||||||||||||||||||||||  |||||||| |||||||| |||| ||||| | |||||||||||  |||||||| |||||||    
T  25342386 aaatttagttttccaaatatataa--cattaattagttttattaaaaacgataaaagtaattgacaaaggatataattgacaaatc 25342469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 633295 - 633357
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||||||||||||||  |||||||| ||||||||||||| ||||||| |||||||||||    
T  633295 tttagttttccaaatatataa--cattaattagttttattgaaaatgataagagtaattgacaaa 633357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 376038 - 375995
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatgcagtc 44  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  376038 aatgagtctttcactctttattccttttgaacattcatgcagtc 375995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 7259623 - 7259685
Alignment:
Q  146 atcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||| |||||||||||||||||||| |||||| | ||||| |||||||||| |||||||    
T  7259623 atcattatcataggtaacaaaattttgtttaaatttgaagataataagaaacaaattttgttt 7259685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 37030921 - 37030970
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  37030921 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 37030970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 306
Target Start/End: Complemental strand, 5493693 - 5493547
Alignment:
Q  160 taacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaat--ttagttttccaaatatataaagcattaatttgt 257  Q
    ||||||||||||||| |||||| | ||||| ||||||||||||||||||           ||||   |||||||| |||||| | ||  |||||||| ||    
T  5493693 taacaaaattttgtttaaatttgaagataataagaaacaaactttgtttttaaaaaaaaaaaaaaaattagtttttcaaatagacaa--cattaattagt 5493596  T
Q  258 tttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||||||||||||||||||| |||||||||||   ||||||| |||||||    
T  5493595 tttattgaaaaagataagagtaattgacaaagggtataattgacaaatc 5493547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 6472670 - 6472726
Alignment:
Q  151 tattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtt 207  Q
    |||| ||||||||||||||||||  |||||| || ||||||||||||||||||||||    
T  6472670 tattgtaggtaacaaaattttgtataaatttgagaataacaagaaacaaactttgtt 6472726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 9588824 - 9588735
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||| |||||||||||||||||||||  |||||||| ||||| ||||||||||||  | |||||||||||   ||||||| | |||||||||    
T  9588824 caaactttagttttccaaatatataa--cattaattagtttttttgaaaaagatattagtaattgacaaagggtataattgataaatcatac 9588735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 20141042 - 20141098
Alignment:
Q  247 cattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaa 303  Q
    |||||||||||||||||||||||||||||| ||||||| ||||  ||||||| ||||    
T  20141042 cattaatttgttttattgaaaaagataagagtaattgagaaaaggtataattgacaa 20141098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 27264168 - 27264104
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcata 309  Q
    ||||||||||  |||||||||||||||||||| |||||||||||   ||||||| ||||||||||    
T  27264168 agcattaattaattttattgaaaaagataagagtaattgacaaatggtataattgacaaatcata 27264104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6749279 - 6749236
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatgcagtc 44  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||    
T  6749279 aatgagtcttccactctttcttccttttgaacattcatgaagtc 6749236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 38751023 - 38751086
Alignment:
Q  145 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||| |||||||||||||||| |||| |   |||||||||||||||| |||||||    
T  38751023 aatcattattatatgtaacaaaattttgtttaaatctgtagataacaagaaacaaattttgttt 38751086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6472524 - 6472562
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  6472524 aatgagtcttccactctttcttccttttgaacattcatg 6472562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 21934489 - 21934544
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataaga 276  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||| ||||||||||||    
T  21934489 caaactttagttttccaaatatata--gcattaattagttttattaaaaaagataaga 21934544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 38750886 - 38750924
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  38750886 aatgagtcttccactctttcttccttttgaacattcatg 38750924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 45759965 - 45760048
Alignment:
Q  225 ttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||| |||||| |||  ||||||||| |||||||||| |||||||||| |||||||||||   ||||||| |||||| ||||    
T  45759965 ttagtttttcaaatagata--gcattaattagttttattgagaaagataagagtaattgacaaagggtataattgacaaatgatac 45760048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 296604 - 296546
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||  ||||||||||||||| |||||||| ||||||||||||| || |||||||    
T  296604 cattattata--taacaaaattttgtttaaattttaagataacaagaaacgaaatttgttt 296546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 1272487 - 1272438
Alignment:
Q  239 atataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    ||||| |||||||||| |||||||||||||| |||||| |||||||||||    
T  1272487 atatatagcattaattagttttattgaaaaatataagagtaattgacaaa 1272438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 2599197 - 2599148
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||| ||||||||| |||||| | ||||||||||||||||||||||||    
T  2599197 gtaacacaattttgtttaaatttaaagataacaagaaacaaactttgttt 2599148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 306
Target Start/End: Complemental strand, 45646738 - 45646594
Alignment:
Q  161 aacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnn-caaaatttagttttccaaatatataaagcattaatttgttt 259  Q
    |||||||||||||| ||||||   ||||||| ||||||||||||||||           |||| ||||||||| |||||| |||  ||||||||| ||||    
T  45646738 aacaaaattttgtttaaatttgcagataacaggaaacaaactttgtttaaaaaaacaaacaaactttagtttttcaaatagata--gcattaattagttt 45646641  T
Q  260 tattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    |||||||||||| || | |||||||||||   ||||||| |||||||    
T  45646640 tattgaaaaagaaaaaagtaattgacaaagggtataattgacaaatc 45646594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 296509 - 296424
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaa-gataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||||||||||||||||||  |||| |||| ||||||| |||||| ||||||| |||||||||||   ||||| | |||||||||||    
T  296509 tttagttttccaaatatata--gcataaattagttttatagaaaaaagataagagtaattgacaaagggtataactgacaaatcatac 296424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 19578411 - 19578326
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    |||| ||| |||||| ||||||||||  |||||||| |||||||||||||||| ||||  ||||||||||   ||||||| |||||||    
T  19578411 caaacttttgttttctaaatatataa--cattaattagttttattgaaaaagacaagagcaattgacaaagggtataattgacaaatc 19578326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 23720335 - 23720461
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagc 247  Q
    |||| |||||| ||||||||||||||| |||||| | |||||||  ||||||| |||||||           ||| ||||||||| |||||||||| | |    
T  23720335 cattgttatagataacaaaattttgtttaaatttaaagataacattaaacaaattttgtttttaaaaaaaaaaaactttagtttttcaaatatatataac 23720434  T
Q  248 attaatttgttttattgaaaaagataa 274  Q
    ||| ||| |||||||||||||| ||||    
T  23720435 atttattagttttattgaaaaatataa 23720461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 23738791 - 23738917
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagc 247  Q
    |||| |||||| ||||||||||||||| |||||| | |||||||  ||||||| |||||||           ||| ||||||||| |||||||||| | |    
T  23738791 cattgttatagataacaaaattttgtttaaatttaaagataacattaaacaaattttgtttttaaaaaaaaaaaactttagtttttcaaatatatataac 23738890  T
Q  248 attaatttgttttattgaaaaagataa 274  Q
    ||| ||| |||||||||||||| ||||    
T  23738891 atttattagttttattgaaaaatataa 23738917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 2093920 - 2093873
Alignment:
Q  161 aacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||| ||| |||||| | ||||||||||||||||||||||||    
T  2093920 aacaaaatttagtttaaatttgaagataacaagaaacaaactttgttt 2093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 12568563 - 12568520
Alignment:
Q  163 caaaattttgttaaaattttaggataacaagaaacaaactttgt 206  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||    
T  12568563 caaaattttgtttaaattttaagataataagaaacaaactttgt 12568520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 13545027 - 13544984
Alignment:
Q  163 caaaattttgttaaaattttaggataacaagaaacaaactttgt 206  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||    
T  13545027 caaaattttgtttaaattttaagataataagaaacaaactttgt 13544984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 23772176 - 23772312
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaa--tttagttttccaaatatataaa 245  Q
    |||| |||||| ||||||||||||||| |||||| | |||||||  ||||||| |||||||           ||||  ||||||||| |||||||||| |    
T  23772176 cattgttatagataacaaaattttgtttaaatttaaagataacattaaacaaattttgtttttaaaaaaaaaaaaaactttagtttttcaaatatatata 23772275  T
Q  246 gcattaatttgttttattgaaaaagataagaataatt 282  Q
     |||| ||| |||||||||||||| |||||| |||||    
T  23772276 acatttattagttttattgaaaaatataagagtaatt 23772312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45759721 - 45759764
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatgcagtc 44  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||    
T  45759721 aatgagtcttccactctttattctttttgaacatttatggagtc 45759764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 21915735 - 21915701
Alignment:
Q  5 agtcttccactctttattccttttgaacattcatg 39  Q
    |||||||||||| ||||||||||||||||||||||    
T  21915735 agtcttccactcgttattccttttgaacattcatg 21915701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 6749136 - 6749087
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaac 197  Q
    |||||| ||||||| |||||||||||  |||||| |||||||||||||||    
T  6749136 cattatgataggtagcaaaattttgtataaatttgaggataacaagaaac 6749087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 20841454 - 20841405
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||| ||||||||| |||||| | ||||| ||||||||||||||||||    
T  20841454 gtaacacaattttgtttaaatttaaagataataagaaacaaactttgttt 20841405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21934326 - 21934363
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcat 38  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  21934326 aatgagtcttccactatttattctttttgaacattcat 21934363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 20841393 - 20841315
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||||||||| |||||| |||  ||||||||| |||||||||||||| |||||  |||||||||||   ||||||| |||||||    
T  20841393 tttagtttttcaaatagata--gcattaattagttttattgaaaaaaataag--taattgacaaatggtataattgacaaatc 20841315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 21959634 - 21959702
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||  ||||| ||||||||||| |||||||| |||||| | |||||||| |||| || |||||||    
T  21959634 catggaactattatcataggtaacaacattttgtttaaatttgaagataacaataaactaattttgttt 21959702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 23701880 - 23701940
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||| |||||| ||||||||||||||| |||||| | |||||||  ||||||| |||||||    
T  23701880 cattgttatagataacaaaattttgtttaaatttaaagataacattaaacaaattttgttt 23701940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 27817460 - 27817413
Alignment:
Q  256 gttttattgaaaaagataagaataattgacaaaaaatataattaacaaa 304  Q
    ||||||||||||||||||| ||||||||||||||  ||||||| |||||    
T  27817460 gttttattgaaaaagataa-aataattgacaaaaggtataattgacaaa 27817413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 16365875 - 16365723
Alignment:
Q  155 ataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatt 254  Q
    |||||||||||||||||||| |||||| | |||||||||||||||| |||||||          |||| |||||||| |||||||||||  ||| |||||    
T  16365875 ataggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttttgagacaaaacaaactttagttt-ccaaatatata--gcactaatt 16365779  T
Q  255 tgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
     |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||    
T  16365778 agttttattgaaaaatataagaataattgacaaaaagtataattgacaaatcatac 16365723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 17201302 - 17201218
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||||||||| |||  ||||||||| ||||||||||||||||||||| |||||||||||  |||||||| |||||||||||    
T  17201302 tttagttttccaaatagata--gcattaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaaatcatac 17201218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 8544685 - 8544823
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtt 258  Q
    ||||||||||||||||  ||||| | ||||||||||||||||||||||||           ||||| |||||||||||||| |||| |  |||||| |||    
T  8544685 gtaacaaaattttgtttgaatttgaagataacaagaaacaaactttgtttaaaa-------aaaatgtagttttccaaataaataacg--ttaattagtt 8544775  T
Q  259 ttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    |||||||||||||||||| ||||||||| |  |||||||| |||||||    
T  8544776 ttattgaaaaagataagagtaattgacagatgatataattgacaaatc 8544823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 14655008 - 14654941
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||    
T  14655008 caaactttagttttccaaatatata--gcattaattagttttattgaaaaatataagaataattgacaaa 14654941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 305
Target Start/End: Original strand, 32717924 - 32718072
Alignment:
Q  155 ataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatt 254  Q
    |||||||||||||||||||| |||||| | |||||||||||| |||  ||||||          |||| ||||||||| |||||||||  ||||||||||    
T  32717924 ataggtaacaaaattttgtttaaatttgaagataacaagaaataaatattgttttaaaacaaaacaaactttagtttttcaaatatat--agcattaatt 32718021  T
Q  255 tgttttattgaaaaagataagaataattgacaaaaaatataattaacaaat 305  Q
     |||| ||||||||| |||||||||| |||||||   ||||||| ||||||    
T  32718022 agtttaattgaaaaatataagaataactgacaaagggtataattgacaaat 32718072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 306
Target Start/End: Complemental strand, 39614983 - 39614828
Alignment:
Q  152 attataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnn---caaaatttagttttccaaatatataaagca 248  Q
    ||||||||||||| ||||||||| |||||| | ||||| ||||||||||||||||||             |||| |||| |||| ||||||||||  |||    
T  39614983 attataggtaacacaattttgtttaaatttgaagataataagaaacaaactttgtttaaaaaaaaacaaacaaactttaatttttcaaatatata--gca 39614886  T
Q  249 ttaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    |||||| ||||| ||||||||||||||| ||||| |||||  |||||||| |||||||    
T  39614885 ttaattagttttgttgaaaaagataagagtaattaacaaaggatataattgacaaatc 39614828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 306
Target Start/End: Complemental strand, 19931982 - 19931832
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagc 247  Q
    ||||||||||||||| |||||| | |  |||||| | |||||||||||||||| |||||||          |||| |||||||||| ||||||||||  |    
T  19931982 cattattataggtaaaaaaattgtct--aaatttgaagataacaagaaacaaattttgttttaaaaaa---caaactttagttttc-aaatatataa--c 19931891  T
Q  248 attaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    || |||| ||||||||||||||||||||||||||||||||| | ||||| | |||||||    
T  19931890 atgaattagttttattgaaaaagataagaataattgacaaatagtataactgacaaatc 19931832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 1583597 - 1583455
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtt 258  Q
    |||||||||||||||| || ||| | |||||||| |||||||||||||||           ||| |||||||||||||||| |||  ||||||||| |||    
T  1583597 gtaacaaaattttgtttaagtttgaagataacaaaaaacaaactttgttttaaaaaaaa--aaactttagttttccaaatagata--gcattaattagtt 1583502  T
Q  259 ttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||||||||||||| |||| | ||||||||| | ||||||| |||||||    
T  1583501 ttattgaaaaagacaagagt-attgacaaagagtataattgacaaatc 1583455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 1590230 - 1590163
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| ||||||||| ||||||||||  ||||||||| |||||||| |||||||||||| |||||||||||    
T  1590230 caaactttagtttttcaaatatata--gcattaattagttttattaaaaaagataagagtaattgacaaa 1590163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 19924967 - 19924901
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| |||||||||| ||||||||||  ||| |||| |||||||||||||||||||||||||||||||||    
T  19924967 caaactttagttttc-aaatatataa--catgaattagttttattgaaaaagataagaataattgacaaa 19924901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 6428375 - 6428326
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||||    
T  6428375 gtaacaaaattttgttaaaatttaaagataacaacaaacaaactttgttt 6428326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 17201377 - 17201328
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  17201377 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 17201328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 13220066 - 13220130
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcata 309  Q
    ||||| |||| |||||||| |||||||||| | || ||||||||| |||||||||||||||||||    
T  13220066 agcatgaattagttttattaaaaaagataaaagtagttgacaaaagatataattaacaaatcata 13220130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 17202834 - 17202923
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||| |||||||||||||||| ||||  |||||||| |||||||||| |||||||| | |||||||||||   ||||||| | |||||||||    
T  17202834 caaactttagttttccaaatagataa--cattaattagttttattgataaagataaaagtaattgacaaagggtataattgaaaaatcatac 17202923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 43346608 - 43346663
Alignment:
Q  145 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaa 200  Q
    ||||||||||||| |||||||||||||||| ||||||   ||||||||||||||||    
T  43346608 aatcattattatatgtaacaaaattttgtttaaatttgtagataacaagaaacaaa 43346663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 249319 - 249357
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  249319 aatgagtcttccactctttcttccttttgaacattcatg 249357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 19922217 - 19922151
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| |||||||||| ||||||||||  ||| |||| ||||||||||||||||||||||||| |||||||    
T  19922217 caaactttagttttc-aaatatataa--catgaattagttttattgaaaaagataagaataactgacaaa 19922151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 249456 - 249516
Alignment:
Q  145 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||| |||||||||||||||| |||   || |||||||||||||||| |||||||    
T  249456 aatcattattatatgtaacaaaattttgtttaaa---taagataacaagaaacaaattttgttt 249516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 14967692 - 14967651
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattt 181  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  14967692 catggaagcattattataggtaacaaaattttgtttaaattt 14967651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 18413316 - 18413365
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| | |||||||||||||||||| |||||    
T  18413316 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactgtgttt 18413365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 20201803 - 20201754
Alignment:
Q  156 taggtaacaaaattttgttaaaattttaggataacaagaaacaaactttg 205  Q
    ||||||||||||||||||| |||||| | |||||||||||||||| ||||    
T  20201803 taggtaacaaaattttgtttaaatttgaagataacaagaaacaaagtttg 20201754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 42674027 - 42674076
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||| || |||||| | ||||||||||||||||||||||||    
T  42674027 gtaacaaaattttatttaaatttgaagataacaagaaacaaactttgttt 42674076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 8544536 - 8544571
Alignment:
Q  4 gagtcttccactctttattccttttgaacattcatg 39  Q
    |||||||||||||||| |||||||||||||||||||    
T  8544536 gagtcttccactctttcttccttttgaacattcatg 8544571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 12436763 - 12436806
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||| |||||||||||||| |||||| |||||||||||    
T  12436763 agcattaattagttttattgaaaaatataagagtaattgacaaa 12436806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 17202341 - 17202388
Alignment:
Q  161 aacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||| |||||| | ||||||||||||| ||||||||||    
T  17202341 aacaaaattttgtttaaatttgaagataacaagaaaccaactttgttt 17202388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 20201712 - 20201664
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataa 274  Q
    |||||||||||||||||||||  |||||||| |||||||||||||| ||||    
T  20201712 tttagttttccaaatatataa--cattaattagttttattgaaaaatataa 20201664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 32474335 - 32474288
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgt 206  Q
    ||||||||||||| || |||||| | ||||||||||||||||||||||    
T  32474335 gtaacaaaattttatttaaatttgaagataacaagaaacaaactttgt 32474288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 249553 - 249600
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagata 273  Q
    |||||||||||||||||||  |||||||||| |||||||| |||||||||    
T  249553 tttagttttccaaatatat--agcattaattagttttattaaaaaagata 249600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 11825447 - 11825494
Alignment:
Q  227 agttttccaaatatataaagcattaatttgttttattgaaaaagataaga 276  Q
    ||||||||||||||| ||  |||||||| |||||||||||||||||||||    
T  11825447 agttttccaaatatacaa--cattaattagttttattgaaaaagataaga 11825494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 17557998 - 17557948
Alignment:
Q  260 tattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||| ||||||||||||||||||   ||||||| |||||||||||    
T  17557998 tattgaaaaatataagaataattgacaaagggtataattgacaaatcatac 17557948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 36437372 - 36437426
Alignment:
Q  245 agcattaattt-gttttattgaaaaagataagaataattgacaaaaaatataatt 298  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||  ||||||||    
T  36437372 agcattaatttagttttattgaaaaagataagagtaattgataaaggatataatt 36437426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 39584903 - 39584844
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataa 280  Q
    |||| |||||||||||||||| ||||   ||||||| ||||||| |||||||||||||||||    
T  39584903 caaactttagttttccaaatacataag--attaattggttttatcgaaaaagataagaataa 39584844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43346471 - 43346509
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  43346471 aatgagtcttccactcttttttctttttgaacattcatg 43346509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 11992224 - 11992289
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgaca 286  Q
    |||| |||||||||||||||| |||  |||||||||  ||||| |||||||||||| | |||||||||    
T  11992224 caaactttagttttccaaataaata--gcattaattaattttactgaaaaagataaaagtaattgaca 11992289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 36437297 - 36437345
Alignment:
Q  160 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||| |||||| | |||||  |||||||||||||||||    
T  36437297 taacaaaattttgtttaaatttgaagataatgagaaacaaactttgttt 36437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 39888617 - 39888589
Alignment:
Q  145 aatcattattataggtaacaaaattttgt 173  Q
    |||||||||||||||||||||||||||||    
T  39888617 aatcattattataggtaacaaaattttgt 39888589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 1358819 - 1358887
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  1358819 catggaaccattattataggtaacaaaattttgtttaaattttaagataacaagaaacaaactttgttt 1358887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 34039049 - 34038981
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||    
T  34039049 catggaatcattattataggtaacaaaattttatttaaattttaagataacaagaaacaaactttgttt 34038981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 32233705 - 32233623
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatca 307  Q
    |||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||   ||||||| ||||||||    
T  32233705 tttagtgttccaaatagataa-gcattaattagttttattgaaaaagataagagtaattgacaaagggtataattgacaaatca 32233623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 45083036 - 45083118
Alignment:
Q  225 ttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcata 309  Q
    ||||||||||||||| || |  |||||||| ||||||||||||||||||||| ||||| |  || ||||||||||||||||||||    
T  45083036 ttagttttccaaatacatta--cattaattagttttattgaaaaagataagagtaattaaacaagaatataattaacaaatcata 45083118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 27231854 - 27231777
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataatt 298  Q
    |||| |||||||||||||||| |||  ||||||||| |||||||||||||| |||||||||||| ||||| | |||||||    
T  27231854 caaactttagttttccaaatagata--gcattaattagttttattgaaaaaaataagaataattaacaaagagtataatt 27231777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 34146264 - 34146179
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    |||| |||||||||||||||| | |   |||||||| ||||||||||||||||||||| ||||||||||| | ||||||| |||||||    
T  34146264 caaactttagttttccaaatagacat--cattaattagttttattgaaaaagataagagtaattgacaaagagtataattgacaaatc 34146179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 4418645 - 4418562
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||||||||||||||||||  ||||||||| |||||||| |||||||| ||  ||||||||||| | ||||||| |||||||||||    
T  4418645 tttagttttccaaatatata--gcattaattagttttatt-aaaaagatgagggtaattgacaaagagtataattgacaaatcatac 4418562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 7578229 - 7578300
Alignment:
Q  239 atataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||||   ||||||| ||| |||||||    
T  7578229 atatatagcattaattagttttattgaaaaatataagaataattgacaaagggtataattgacagatcatac 7578300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 9455315 - 9455248
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| |||| |||| ||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||    
T  9455315 caaactttattttttcaaatatata--gcattaattagttttattgaaaaatataagaataattgacaaa 9455248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 14896694 - 14896623
Alignment:
Q  235 aaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcat 308  Q
    ||||||||||  |||||||| ||||||||||||||||||||| |||||||||||  ||||| || |||||||||    
T  14896694 aaatatataa--cattaattagttttattgaaaaagataagagtaattgacaaatgatatatttgacaaatcat 14896623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 38457352 - 38457289
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattga 284  Q
    |||| |||||||||||||||| |||  ||||||||| ||||||||||||||||||| |||||||||    
T  38457352 caaactttagttttccaaatagata--gcattaattagttttattgaaaaagataaaaataattga 38457289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 5870831 - 5870769
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    ||||||||| |||||| ||||  |||||||| ||||||||||||| |||||||||||||||||||    
T  5870831 tttagtttttcaaatagataa--cattaattagttttattgaaaatgataagaataattgacaaa 5870769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 16393842 - 16393718
Alignment:
Q  161 aacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtttt 260  Q
    |||||||||||||| |||||| | |||||||| ||| |||||||||||          |||| |||||||||||||||| |||  ||||||||| |||||    
T  16393842 aacaaaattttgtttaaatttgaagataacaaaaaataaactttgtttaaaaaaaac-caaactttagttttccaaatagata--gcattaattagtttt 16393746  T
Q  261 attgaaaaagataagaataattgacaaa 288  Q
    |||||||||| ||| | |||||||||||    
T  16393745 attgaaaaagctaaaagtaattgacaaa 16393718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 306
Target Start/End: Original strand, 39628293 - 39628379
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaa-atataattaacaaatc 306  Q
    |||| |||||||||||||||| ||||  |||||||| |||||||||||||| |||||| ||||||| |||||  ||||||| |||||||    
T  39628293 caaactttagttttccaaatagataa--cattaattagttttattgaaaaaaataagagtaattgataaaaaggtataattgacaaatc 39628379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 306
Target Start/End: Original strand, 39637843 - 39637929
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaa-atataattaacaaatc 306  Q
    |||| |||||||||||||||| ||||  |||||||| |||||||||||||| |||||| ||||||| |||||  ||||||| |||||||    
T  39637843 caaactttagttttccaaatagataa--cattaattagttttattgaaaaaaataagagtaattgataaaaaggtataattgacaaatc 39637929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 16599268 - 16599332
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 204  Q
    |||||||||||||| ||||||||||||||||| || |||||| | ||||||  ||||||||||||    
T  16599268 catggaatcattatgataggtaacaaaattttatttaaatttgaagataactcgaaacaaacttt 16599332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 310
Target Start/End: Complemental strand, 25496788 - 25496641
Alignment:
Q  160 taacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgttt 259  Q
    ||||||||||||||| |||||| | ||||| ||||||||||||||| ||          |||| ||||||||| |||||| |||  ||||||||| ||||    
T  25496788 taacaaaattttgtttaaatttaaagataataagaaacaaactttgcttaaaataaaa-caaactttagtttttcaaatagata--gcattaattagttt 25496692  T
Q  260 tattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||||||||||||| | ||||| |||||   ||||||| | |||||||||    
T  25496691 tattgaaaaagataaaagtaattaacaaagggtataattgataaatcatac 25496641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 3741810 - 3741747
Alignment:
Q  145 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||| ||||||||||||| || |||| | | |||||||||||||||| |||||||    
T  3741810 aatcattattatatgtaacaaaattttctttaaatatgaagataacaagaaacaaattttgttt 3741747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 29315806 - 29315934
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagca 248  Q
    ||||||||| |||||||||||||||| |||| |   |||||||||||||||| |||||||           ||| |||||||||||||||||||  ||||    
T  29315806 attattatatgtaacaaaattttgtttaaatctgtagataacaagaaacaaattttgttttaaaaaaaa--aaactttagttttccaaatatat--agca 29315901  T
Q  249 ttaatttgttttattgaaaaagataagaataat 281  Q
    ||| || |||||||| |||||||||||| ||||    
T  29315902 ttacttagttttattaaaaaagataagagtaat 29315934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 2742941 - 2743008
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| |||| |||| ||||||||||  ||||||||| |||||||||||||| |||| |||||||||||||    
T  2742941 caaactttaatttttcaaatatata--gcattaattagttttattgaaaaatataaaaataattgacaaa 2743008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 3741711 - 3741656
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataat 281  Q
    ||||||||||||||||||||  ||||||||| |||||||| |||||||||||| ||||    
T  3741711 tttagttttccaaatatata--gcattaattagttttattaaaaaagataagagtaat 3741656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 38401621 - 38401563
Alignment:
Q  247 cattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaat 305  Q
    ||||||||  ||||||| |||||||||||| ||||||||||| ||||||||| ||||||    
T  38401621 cattaattaattttattaaaaaagataagagtaattgacaaataatataattgacaaat 38401563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 1530622 - 1530683
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    |||||||||  |||||||||||||| |||||| ||||||||||||  ||||||| |||||||    
T  1530622 agcattaatcagttttattgaaaaaaataagagtaattgacaaaatgtataattgacaaatc 1530683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 16599386 - 16599444
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattga 284  Q
    ||||||||| ||||||||||   |||||||| ||||||||||||||||||||| |||||||    
T  16599386 tttagttttacaaatatatat--cattaattagttttattgaaaaagataagagtaattga 16599444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 3443631 - 3443699
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||  ||||| |||| ||||||||||| ||| |||||| | |||||||||||||||| |||||||    
T  3443631 catggaactattatcatagataacaaaatttggtttaaatttgaagataacaagaaacaaattttgttt 3443699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 25400551 - 25400462
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||| |||||||||||||||| |||  ||||||||| ||||||||||||| ||||| | ||||| |||||   ||||||| | |||||||||    
T  25400551 caaactttagttttccaaatagata--gcattaattagttttattgaaaaggataaaagtaattaacaaagggtataattgataaatcatac 25400462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 3741943 - 3741908
Alignment:
Q  4 gagtcttccactctttattccttttgaacattcatg 39  Q
    |||||||||||||||| |||||||||||||||||||    
T  3741943 gagtcttccactctttcttccttttgaacattcatg 3741908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 7695303 - 7695383
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||||||||| |||||| ||||  |||||| | ||||||||||||||||||||| ||||| | |||  |||||||| |||||||    
T  7695303 tttagtttttcaaatagataa--cattaactagttttattgaaaaagataagagtaattaaaaaatgatataattgacaaatc 7695383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36682834 - 36682796
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  36682834 aatgagtcttccactattttttccttttgaacattcatg 36682796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 30887895 - 30887936
Alignment:
Q  247 cattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||| |||||||| |||||||||||| |||||||||||    
T  30887895 cattaattagttttattaaaaaagataagagtaattgacaaa 30887936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 4418824 - 4418884
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||||||| ||| ||| |||||| | ||||| ||||||||| ||| ||||    
T  4418824 cattattataggtaacaaagtttagtttaaatttgaagataataagaaacaatcttcgttt 4418884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 11087270 - 11087222
Alignment:
Q  160 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||| |||||| | ||||| ||||||||| ||||||||    
T  11087270 taacaaaattttgtttaaatttgaagataataagaaacaagctttgttt 11087222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 4316773 - 4316692
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatca 307  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  4316773 tttagttttccaaatatataa--cattaattagttttattgaaaaagataagagtaattgacaaaagatataattgacaaatca 4316692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 298
Target Start/End: Complemental strand, 41541199 - 41541048
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt---nnnnnnnnnncaaaatttagttttccaaatatataa 244  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||              ||| ||||||||| |||||||||      
T  41541199 cattattatagataacaaaattttgtttaaattttaagataacaagaaacaaactttatttaaaaaacaaaaaataaactttagtttttcaaatatat-- 41541102  T
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaaaaatataatt 298  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||    
T  41541101 agcattaattagttttattgaaaaagataagagtaaatgacaaaagatataatt 41541048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 42756853 - 42756782
Alignment:
Q  239 atataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||||| |||||||| |||||||||||    
T  42756853 atatatagcattaattagttttattgaaaaatataagaataattgacaaaagatataattgacaaatcatac 42756782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 148 - 288
Target Start/End: Complemental strand, 44898263 - 44898124
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnn-caaaatttagttttccaaatatataaag 246  Q
    ||||||||||||||| ||||||||||| |||||| | |||||||||||||  |||||||||           | || ||||||||| |||||||||||      
T  44898263 cattattataggtaataaaattttgtttaaatttgaagataacaagaaacgcactttgtttaaaaaaacaaaccaactttagtttttcaaatatataa-- 44898166  T
Q  247 cattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  44898165 cattaattagttttattgaaaaagataagagtaattgacaaa 44898124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 20171448 - 20171540
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatactct 313  Q
    |||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||||||||   ||||||| |||| |||| ||||    
T  20171448 caaactttagttttccaaatatataa--cattaattagttttattgaaaaagataagagtaattgacaaagggtataattgacaactcatgctct 20171540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 32113373 - 32113452
Alignment:
Q  229 ttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||||||||||||| |||  |||||||| |||||||||||    
T  32113373 ttttccaaatatataa--cattaattagttttattgaaaaatataagaataattgataaaggatataattgacaaatcatac 32113452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 310
Target Start/End: Complemental strand, 33659860 - 33659694
Alignment:
Q  141 atggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaac--tttgtttnnnnnnnnnncaaaatttagttttccaaat 238  Q
    |||||| |||| |||||||||||||||||||||| ||||| || ||||||||||||||| |  || ||||          |||| || |||||| |||||    
T  33659860 atggaaccattgttataggtaacaaaattttgtttaaattgtaagataacaagaaacaagcaattagtttaaaaaaa---caaacttcagtttttcaaat 33659764  T
Q  239 atataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||||   ||||||| ||||||||||||||||||||| |||||||||||  |||||||| |||||| ||||    
T  33659763 atataat--attaattagttttattgaaaaagataagagtaattgacaaatgatataattgacaaattatac 33659694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 288
Target Start/End: Original strand, 45273364 - 45273491
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtt 258  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||||||||           ||| |||| ||||| ||||| ||  | |||||||| |||    
T  45273364 gtaacaaagttttgtttaaattttaagataacaagaaacaaactttgtttaaaaaaaatataaactttatttttctaaatagat--atcattaattagtt 45273461  T
Q  259 ttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||||||||||| |||||||||||    
T  45273462 ttattgaaaaagataagagtaattgacaaa 45273491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 4316865 - 4316802
Alignment:
Q  145 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| ||||||||||||| |||||| | ||||||||| ||||||||||||||    
T  4316865 aatcattattataggttacaaaattttgtttaaatttaaagataacaaggaacaaactttgttt 4316802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 11083983 - 11083896
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcat 308  Q
    |||| ||||||||| |||||||||||  |||||||| |||||||| |||||||| |||  |||||||||||  |||||||||||||||||    
T  11083983 caaactttagtttttcaaatatataa--cattaattagttttattaaaaaagatcagagaaattgacaaaaggtataattaacaaatcat 11083896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 36244050 - 36244133
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcata 309  Q
    |||||||||||||||||||||  |||||||| |||||||| ||||| |||||| |||||||||||   ||||||| ||||||||||    
T  36244050 tttagttttccaaatatataa--cattaattagttttattaaaaaatataagagtaattgacaaagggtataattgacaaatcata 36244133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 310
Target Start/End: Complemental strand, 15507599 - 15507442
Alignment:
Q  153 ttataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnn---caaaatttagttttccaaatatataaagcat 249  Q
    ||||||||| ||||||||||||  ||||||| |||||||| |||||||||||||||             |||| ||||||||| ||| ||||||  ||||    
T  15507599 ttataggtagcaaaattttgtttgaattttaagataacaaaaaacaaactttgttttaaaagaaacaaacaaactttagtttttcaattatata--gcat 15507502  T
Q  250 taatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||| |||| |||||||||||||||| |||||||||||   ||||||| |||||||||||    
T  15507501 taattagttt-attgaaaaagataagagtaattgacaaagggtataattgacaaatcatac 15507442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 158006 - 158066
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||    
T  158006 cattattatagataacaaaattttgtttaaatttgaaggtaacaagaaacaaactttgttt 158066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 158100 - 158161
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataatt 282  Q
    |||| ||||||||||||||||||||||  ||||||| ||||||||||||||||||||| |||||    
T  158100 caaattttagttttccaaatatataaa--attaattagttttattgaaaaagataagagtaatt 158161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 11084080 - 11084013
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||| ||||||||||||| ||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  11084080 catggaaccattattataggtgacaaaattt-gtttaaattttaagatagcaagaaacaaactttgttt 11084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 27746650 - 27746582
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||| |||||| ||||||| |||||||||||| |||||| | |||||||||||||||| |||||||    
T  27746650 catggaaccattatcataggtagcaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 27746582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 42872200 - 42872253
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaac 201  Q
    |||| |||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  42872200 cattgttataggtaacaaagttttgtttaaattttaagataacaagaaacaaac 42872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 4700974 - 4701047
Alignment:
Q  223 atttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataatt 298  Q
    |||||||||||||||||||||  | |||||||  |||||||||||| ||||||| ||||||||||| | |||||||    
T  4700974 atttagttttccaaatatata--gtattaattaattttattgaaaacgataagagtaattgacaaatagtataatt 4701047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 21252656 - 21252576
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||||||||| |||||| |||  |||||||||  |||||||||||||||||||  ||||||||||| | ||||||| |||||||    
T  21252656 tttagtttttcaaatagata--gcattaattaattttattgaaaaagataagtgtaattgacaaagagtataattgacaaatc 21252576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 33659630 - 33659550
Alignment:
Q  227 agttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcata 309  Q
    ||||||||||||||||||  |||||||| |||||||||||||| |||||| ||||| | |||   ||||||| ||||||||||    
T  33659630 agttttccaaatatataa--cattaattagttttattgaaaaatataagagtaattaataaattgtataattgacaaatcata 33659550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 34424692 - 34424751
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||| |||||||||||||||||||| |||||| | |||||||| ||||||| |||||||    
T  34424692 attatcataggtaacaaaattttgtttaaatttgaagataacaaaaaacaaattttgttt 34424751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20171229 - 20171267
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  20171229 aatgagtcttccactctttcttccttttgaacattcatg 20171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 25965802 - 25965852
Alignment:
Q  158 ggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  25965802 ggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 25965852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36243816 - 36243854
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatg 39  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  36243816 aatgtgtcttccactctttattccttttgaacattcatg 36243854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 7486330 - 7486380
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataaga 276  Q
    |||||||||||||||||||||  |||||||| |||||||||||||| ||||||    
T  7486330 tttagttttccaaatatataa--cattaattagttttattgaaaaatataaga 7486380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 16806503 - 16806552
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| ||||||||||||| |||| |||||||    
T  16806503 gtaacaaaattttgtttaaatttgaggataacaagaatcaaattttgttt 16806552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 16845784 - 16845833
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| ||||||||||||| |||| |||||||    
T  16845784 gtaacaaaattttgtttaaatttgaggataacaagaatcaaattttgttt 16845833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 27746541 - 27746459
Alignment:
Q  226 tagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||||| ||||||||||  ||||||||| |||||||||||||| |||| | ||||  ||||||  ||||||| |||||||||||    
T  27746541 tagtttttcaaatatata--gcattaattagttttattgaaaaatataaaagtaataaacaaaaggtataattgacaaatcatac 27746459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 1770188 - 1770265
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataatt 298  Q
    |||| ||||||||| |||||||||||  |||||||| ||||||||||||||  ||||| | |||||||||  ||||||||    
T  1770188 caaactttagtttttcaaatatataa--cattaattagttttattgaaaaaattaagagtgattgacaaatgatataatt 1770265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 150288 - 150353
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| ||||||||| |||||||||||  |||||||| |||||||||||||  |||||| |||||||||||    
T  150288 caaactttagtttttcaaatatataa--cattaattagttttattgaaaa--ataagagtaattgacaaa 150353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 4959298 - 4959349
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaa 200  Q
    ||||| ||||||||||||||||| || |||||| | ||||||||||||||||    
T  4959298 attatcataggtaacaaaattttatttaaatttgaagataacaagaaacaaa 4959349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 4959395 - 4959479
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||||| ||||||||||||  |||||||||  ||||||| ||||  |||||||| |||||||||   ||||||| |||||||||||    
T  4959395 tttagttatccaaatatata--gcattaattaattttattaaaaactataagaatgattgacaaacggtataattgacaaatcatac 4959479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25714153 - 25714196
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatgcagtc 44  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||||    
T  25714153 aatgattcttccactctttcttccttttgaacattcatggagtc 25714196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 4316948 - 4316914
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacatt 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  4316948 aatgagtcttccactctttcttccttttgaacatt 4316914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 29408800 - 29408867
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| ||||||||| |||||| ||||  ||||||||  |||||||||||||||||| | |||||||||||    
T  29408800 caaactttagttttgcaaatagataa--cattaattacttttattgaaaaagataaaagtaattgacaaa 29408867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 11073881 - 11073926
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 204  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||    
T  11073881 gtaacaaaattttgtttaaatttgaaaataacaagaaacaaacttt 11073926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 33024407 - 33024374
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattt 181  Q
    ||||||||||||||||||||||||||| ||||||    
T  33024407 cattattataggtaacaaaattttgtttaaattt 33024374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 38589315 - 38589377
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||| ||||| |||  |||||||||  |||||||||||||||||| | |||||||||||    
T  38589315 tttagttttctaaatagata--gcattaattgattttattgaaaaagataaaagtaattgacaaa 38589377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 33659997 - 33659957
Alignment:
Q  4 gagtcttccactctttattccttttgaacattcatgcagtc 44  Q
    |||||||| ||||||| ||||||||||||||||||| ||||    
T  33659997 gagtcttctactctttcttccttttgaacattcatggagtc 33659957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 310
Target Start/End: Original strand, 7972565 - 7972730
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaata 239  Q
    |||||||  ||||| | |||||||||||||||||| |||||| | |||||||||||||||| |||||||          |||| ||||||||| ||||||    
T  7972565 catggaactattatcacaggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgtttaaaaaaa---caaactttagtttttcaaata 7972661  T
Q  240 tataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||  |||||||| |||||||||||||| || |||||||||||||||   ||||||| | |||||||||    
T  7972662 tataa--cattaattagttttattgaaaaatattagaataattgacaaagtgtataattgataaatcatac 7972730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 9095778 - 9095867
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||   ||||||| |||||||||||    
T  9095778 caaattttagttttccaaatatata--gcattaattagttttattgaaaaatataagaataattgacaaatggtataattgacaaatcatac 9095867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 8461016 - 8460948
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||| |||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  8461016 catggaaccattgttataggtaacaaagttttgtttaaattttaagataacaagaaacaaactttgttt 8460948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 2437845 - 2437933
Alignment:
Q  220 aaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||||||||||||| |||   |||||||| |||||||||||||| ||||||||||||||||||   ||||||| |||||||||||    
T  2437845 aaaatttagttttccaaatagatat--cattaattagttttattgaaaaaaataagaataattgacaaagggtataattgacaaatcatac 2437933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 25056566 - 25056482
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||||||||| |||  ||||||||| ||||||||||||||||||||| ||||||||||| | ||| ||| |||||||||||    
T  25056566 tttagttttccaaatagata--gcattaattagttttattgaaaaagataagagtaattgacaaagagtatgattgacaaatcatac 25056482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 23410630 - 23410573
Alignment:
Q  150 ttattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtt 207  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  23410630 ttatcataggtaacaaaattttgtttaaattttaagataacaagaaacaaactttgtt 23410573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 309
Target Start/End: Complemental strand, 4666028 - 4665871
Alignment:
Q  154 tataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt----nnnnnnnnnncaaaatttagttttccaaatatataaagcat 249  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||| |||||||              |||| ||||||||| |||||||||  |||||    
T  4666028 tataggtaacaaaattttgtttaaatttaaagataacaagaaacaaattttgttttaaaacaaaacaaacaaactttagtttttcaaatatat--agcat 4665931  T
Q  250 taatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcata 309  Q
    ||||| |||||||| ||||| |||||| ||||||| |||   ||||||| ||||||||||    
T  4665930 taattagttttatttaaaaatataagagtaattgataaatggtataattgacaaatcata 4665871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 14093819 - 14093880
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| | ||||||| |||||||    
T  14093819 agcattaattagttttattgaaaaagataagagtaattgacaaagagtataattgacaaatc 14093880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 21527231 - 21527299
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||  ||||| |||||||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  21527231 catggaactattatcataggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 21527299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 6111041 - 6111100
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||||||||||| || || ||| | ||||||||||||||||||||||||    
T  6111041 attattataggtaacaaaattttatttaagtttgaagataacaagaaacaaactttgttt 6111100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 8049318 - 8049193
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtt 258  Q
    |||||||||||  |||||||| | | |||||||||||||||| |||||||          |||| |||||||||||||||| |||   |||||||| |||    
T  8049318 gtaacaaaattacgttaaaatgtgaagataacaagaaacaaattttgtttaagaaaaa--caaactttagttttccaaatagatat--cattaattagtt 8049223  T
Q  259 ttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||||||||||| |||||||||||    
T  8049222 ttattgaaaaagataagagtaattgacaaa 8049193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 9095684 - 9095743
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||| |||||||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  9095684 attatcataggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 9095743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 6111132 - 6111195
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattga 284  Q
    |||| |||||||||||||||||||||  |||||||| |||||||| |||||||||||| |||||||    
T  6111132 caaactttagttttccaaatatataa--cattaattagttttatttaaaaagataagagtaattga 6111195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 25056640 - 25056591
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  25056640 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 25056591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 21527333 - 21527422
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||| ||||||||| |||||||  |||||||||||| |||||| ||||||| || |||||||||||||||   | ||||| |||||||||||    
T  21527333 caaactttagtttttcaaatat--aaagcattaattagttttaatgaaaaatattagaataattgacaaagggtttaattgacaaatcatac 21527422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 4184818 - 4184770
Alignment:
Q  160 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  4184818 taacaaaattttgtttaaatttaaagataacaagaaacaaattttgttt 4184770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 34889142 - 34889065
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataatt 298  Q
    |||| |||| |||| |||||||||||  || ||||| ||||||||||||||||||||| ||||| ||||| | |||||||    
T  34889142 caaactttaatttttcaaatatataa--caataattagttttattgaaaaagataagagtaattaacaaagagtataatt 34889065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9353380 - 9353337
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatgcagtc 44  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||    
T  9353380 aatgagtcttctactctttcttccttttgaacattcatggagtc 9353337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23410778 - 23410740
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  23410778 aatgagtcttcgactctttcttccttttgaacattcatg 23410740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 26252600 - 26252655
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataaga 276  Q
    |||| |||| |||||||||||||||  ||||||||| |||||||| ||||||||||||    
T  26252600 caaactttatttttccaaatatata--gcattaattagttttattaaaaaagataaga 26252655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 9353177 - 9353140
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataatt 282  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  9353177 agcattaattagttttattgaaaaagataagagtaatt 9353140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 31871714 - 31871751
Alignment:
Q  144 gaatcattattataggtaacaaaattttgttaaaattt 181  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  31871714 gaatcattattatagataacaaaatattgttaaaattt 31871751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 162 - 307
Target Start/End: Original strand, 35793061 - 35793204
Alignment:
Q  162 acaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtttta 261  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||           |||  ||||||||||||||| | ||  |||||||| ||||||    
T  35793061 acaaaattttgtttaaatttgaagataacaagaaacaaactttgttttaagaaaaaaaaaacattagttttccaaatagacaa--cattaattagtttta 35793158  T
Q  262 ttgaaaaagataagaataattgacaaaaaatataattaacaaatca 307  Q
    ||||||||||||||| |||||||||||   ||||||| ||||||||    
T  35793159 ttgaaaaagataagagtaattgacaaagggtataattgacaaatca 35793204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 310
Target Start/End: Original strand, 4962870 - 4963033
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaa----tttagttttccaaatatataa 244  Q
    ||||| |||||||||||||||||||| |||||| | |||||||| ||||||| |||||||          ||||     ||||||||| ||||||||||     
T  4962870 attatcataggtaacaaaattttgtttaaatttgaagataacaataaacaaattttgttttaaaacaaaacaaacaaactttagtttttcaaatatata- 4962968  T
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
     ||| ||||| |||||||||||||| |||||||||||||||||||  ||||||| | |||||||||    
T  4962969 -gcactaattagttttattgaaaaatataagaataattgacaaaaggtataattgataaatcatac 4963033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 2273520 - 2273604
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaat 305  Q
    |||| ||||||||||||||||||||  ||||||||  ||||||||||||||||||||| |||||||||||   ||||||| ||||||    
T  2273520 caaactttagttttccaaatatata--gcattaataagttttattgaaaaagataagagtaattgacaaagcgtataattgacaaat 2273604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 140 - 309
Target Start/End: Complemental strand, 25290782 - 25290611
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt----nnnnnnnnnncaaaatttagttttcca 235  Q
    |||||||  ||||| | |||||||||||||||||| |||||| | ||||||| |||||||| |||||||              |||| ||||||||| ||    
T  25290782 catggaactattatcacaggtaacaaaattttgtttaaatttgatgataacaggaaacaaattttgttttaaaataaaacaaacaaactttagtttttca 25290683  T
Q  236 aatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcata 309  Q
    ||||||  |  |||||||| |||||||||||||| ||||||||||||||||||| |||||||| | ||||||||    
T  25290682 aatatacga--cattaattagttttattgaaaaatataagaataattgacaaaagatataattgataaatcata 25290611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 28226622 - 28226544
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaa 304  Q
    ||||||||| |||||||||||  |||||||| |||||||||||||||||||||  |||||||||||  ||||||| |||||    
T  28226622 tttagtttttcaaatatataa--cattaattagttttattgaaaaagataagagcaattgacaaaaggtataattgacaaa 28226544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 2798684 - 2798619
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgaca 286  Q
    |||| ||||||||| ||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  2798684 caaactttagtttttcaaatatata--gcattaattagttttattgaaaaagataagagtaattgaca 2798619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 10026227 - 10026291
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    ||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||| |||||    
T  10026227 tttagtttttcaaatatatataacattaattagttttattgaaaaagataagagtaattaacaaa 10026291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 39430609 - 39430686
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataatt 298  Q
    |||| ||||||||| ||||||||||  ||| ||||| |||||||||||||| |||||||||||||||||| | |||||||    
T  39430609 caaactttagtttttcaaatatata--gcactaattagttttattgaaaaatataagaataattgacaaagagtataatt 39430686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 3835594 - 3835643
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  3835594 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 3835643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 15643409 - 15643351
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattga 284  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||| |||||| |||||||    
T  15643409 tttagttttccaaatatata--gcattaattagttttattgaaaaaaataagagtaattga 15643351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 17269625 - 17269571
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 204  Q
    ||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||||    
T  17269625 cattattataggtaacaaaattttgttgaaattttatgataac--gaaacaaacttt 17269571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 4567451 - 4567328
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtt 258  Q
    |||||||||||||||| |||||| | ||||| ||||||||||||||||||           ||| ||||||||||||| || ||  |||||||||| |||    
T  4567451 gtaacaaaattttgtttaaatttgaagataagaagaaacaaactttgtttaaagaaa----aaactttagttttccaactagat--agcattaattagtt 4567358  T
Q  259 ttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||||||||| | || ||||||||    
T  4567357 ttattgaaaaagataaaagtagttgacaaa 4567328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 12394287 - 12394239
Alignment:
Q  160 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  12394287 taacaaaattttgtttaaatttgatgataacaagaaacaaactttgttt 12394239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 2271863 - 2271902
Alignment:
Q  169 tttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  2271863 tttgtttaaattttaggataacaagaaacaaactttgttt 2271902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 10535042 - 10535100
Alignment:
Q  247 cattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaat 305  Q
    |||||||| |||||||||||||||||||||  |||||||||||  ||||||| ||||||    
T  10535042 cattaattagttttattgaaaaagataagaggaattgacaaaaggtataattgacaaat 10535100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 37124248 - 37124169
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaat 305  Q
    |||||||||||||||| | |  ||||||||| ||||||||||||||||||||| ||||| |||||   ||||||| ||||||    
T  37124248 tttagttttccaaatagaga--gcattaattagttttattgaaaaagataagagtaatttacaaagggtataattgacaaat 37124169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 8614780 - 8614829
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  8614780 gtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 8614829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 281
Target Start/End: Complemental strand, 16196919 - 16196804
Alignment:
Q  162 acaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtttta 261  Q
    ||||||||||||| |||||| | || |||||||||||||||||||||          |||| ||||||||||||| || ||||  ||| |||| ||||||    
T  16196919 acaaaattttgtttaaatttgaagaaaacaagaaacaaactttgttt--aataaaaacaaactttagttttccaattagataa--catcaattagtttta 16196824  T
Q  262 ttgaaaaagataagaataat 281  Q
    ||||||||||||||| ||||    
T  16196823 ttgaaaaagataagagtaat 16196804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 43368859 - 43368797
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||||||||||||||  | |||||| |||||||| |||||||||| | |||||||||||    
T  43368859 tttagttttccaaatatataa--ctttaattagttttatttaaaaagataaaagtaattgacaaa 43368797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 12394431 - 12394395
Alignment:
Q  3 tgagtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||||||||| |||||||||||||||||||    
T  12394431 tgagtcttccactcttttttccttttgaacattcatg 12394395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 14771361 - 14771409
Alignment:
Q  160 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  14771361 taacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 14771409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 15221813 - 15221861
Alignment:
Q  160 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  15221813 taacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 15221861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 15643509 - 15643449
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||| |||| ||||||||||||||| |||||| | |||||||| ||||||| |||||||    
T  15643509 cattatgatagctaacaaaattttgtttaaatttgaagataacaataaacaaattttgttt 15643449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 39427481 - 39427425
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaattt-gttttattgaaaaagataaga 276  Q
    |||| |||||||||||||||||||  ||||||||||| |||||||| ||||||||||||    
T  39427481 caaactttagttttccaaatatat--agcattaatttagttttattaaaaaagataaga 39427425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 4678477 - 4678434
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaa 269  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||    
T  4678477 tttagttttccaaatatataa--cattaattagttttattgaaaaa 4678434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 14771456 - 14771506
Alignment:
Q  260 tattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||| ||||||||||||||||||   ||||||| |||||||||||    
T  14771456 tattgaaaaatataagaataattgacaaagggtataattgacaaatcatac 14771506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 15221908 - 15221958
Alignment:
Q  260 tattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||| ||||||||||||||||||   ||||||| |||||||||||    
T  15221908 tattgaaaaatataagaataattgacaaagggtataattgacaaatcatac 15221958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29664574 - 29664536
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  29664574 aatgagtcttccactcttttttctttttgaacattcatg 29664536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 10534959 - 10535008
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||| | |||||| | |||||||||||||||||| |||||    
T  10534959 gtaacaaaattttggttaaatttgaagataacaagaaacaaactatgttt 10535008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 39432666 - 39432604
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    ||||||||| ||||||||||  ||| ||||  |||||||||||||| |||| |||||||||||||    
T  39432666 tttagtttttcaaatatata--gcactaataagttttattgaaaaatataaaaataattgacaaa 39432604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 24538312 - 24538401
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||| |||||||||||||||||||||  || ||||| |||||||||||||| ||||||||||||||||||   | ||||| |||||||||||    
T  24538312 caaactttagttttccaaatatataa--cactaattagttttattgaaaaatataagaataattgacaaaggttgtaattgacaaatcatac 24538401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 53370311 - 53370371
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||    
T  53370311 cattattataggtaacaaacttttgtttaaattttaagataataagaaacaaactttgttt 53370371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 25490543 - 25490459
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaat 305  Q
    |||| |||||||||||||||||||||  ||||||||  |||||||||||| ||||||| |||||||||||   ||||||||||||||    
T  25490543 caaactttagttttccaaatatataa--cattaattatttttattgaaaatgataagagtaattgacaaatggtataattaacaaat 25490459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 30913696 - 30913637
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||    
T  30913696 attattataggtaacaaaaatttgtttaaattttaagataacaagaaacaagctttgttt 30913637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 45635465 - 45635527
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||||||||||||||  |||||||| |||||||||||||| |||||| |||||||||||    
T  45635465 tttagttttccaaatatataa--cattaattagttttattgaaaaatataagagtaattgacaaa 45635527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 37209992 - 37210081
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||| |||||||||||||||| |||  ||||| ||| ||||||||||||||||||| |||||||||||||   ||||||| |||||| ||||    
T  37209992 caaactttagttttccaaatagata--gcattgattagttttattgaaaaagataaaaataattgacaaagggtataattgacaaattatac 37210081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 25493906 - 25493839
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| |||||||||||||||| ||||  |||||||| ||||||||||||||||||||| |||||| ||||    
T  25493906 caaactttagttttccaaatagataa--cattaattagttttattgaaaaagataagagtaattgtcaaa 25493839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 305
Target Start/End: Original strand, 54982705 - 54982846
Alignment:
Q  163 caaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaa-tttagttttccaaatatataaagcattaatttgtttta 261  Q
    |||||||||||  |||||| | ||||||||||||||||||||||||          | ||| |||||||||||||||| |||  |||||| || ||||||    
T  54982705 caaaattttgtataaatttgaagataacaagaaacaaactttgtttaaaaagaaaaccaaactttagttttccaaatagata--gcattagttagtttta 54982802  T
Q  262 ttgaaaaagataagaataattgacaaaaaatataattaacaaat 305  Q
    ||||||| ||||| | ||||||||||| | ||||||| ||||||    
T  54982803 ttgaaaaggataaaagtaattgacaaagagtataattgacaaat 54982846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 6949148 - 6949087
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    |||||||||| ||||||||||||||||||||| |||||||||||   ||||||| |||||||    
T  6949148 agcattaattagttttattgaaaaagataagagtaattgacaaatggtataattgacaaatc 6949087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 30912770 - 30912714
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 204  Q
    ||||||| |||||||||||  |||||| |||||||| ||||||||||||||||||||    
T  30912770 cattattgtaggtaacaaatatttgtttaaattttaagataacaagaaacaaacttt 30912714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 50720956 - 50720892
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcata 309  Q
    |||||||||| ||||||||||||||||||||| |||||||||||   ||||||| ||| ||||||    
T  50720956 agcattaattagttttattgaaaaagataagagtaattgacaaatggtataattgacacatcata 50720892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 9089646 - 9089689
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  9089646 agcattaattagttttattgaaaaagataagagtaattgacaaa 9089689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 38840364 - 38840411
Alignment:
Q  161 aacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||| |||||| | ||||||||||||||||||||||||    
T  38840364 aacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 38840411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 668035 - 668090
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataaga 276  Q
    |||| |||||||||||||||||||||  |||||||| |||||||| ||||||||||||    
T  668035 caaactttagttttccaaatatataa--cattaattagttttatttaaaaagataaga 668090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 33889677 - 33889622
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataat 281  Q
    ||||||||||||||||||||  ||||||||| |||||||| |||||||||||| ||||    
T  33889677 tttagttttccaaatatata--gcattaattagttttattaaaaaagataagagtaat 33889622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 23529596 - 23529510
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattga-aaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    |||| |||||||||||||||| |||  ||||||||| |||||||||| ||||||||| | ||||||| ||||  ||||||| |||||||    
T  23529596 caaattttagttttccaaataaata--gcattaattagttttattgaaaaaagataaaagtaattgagaaaaggtataattgacaaatc 23529510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 25493973 - 25493924
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| | |||| |||||||||||||||||||    
T  25493973 gtaacaaaattttgtttaaatttgaagataccaagaaacaaactttgttt 25493924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 38434248 - 38434306
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattga 284  Q
    ||||||||| ||||||||||  ||| ||||| |||||||||||||| ||||||||||||||    
T  38434248 tttagtttttcaaatatata--gcactaattagttttattgaaaaatataagaataattga 38434306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 53393487 - 53393438
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| | |||||| |||||||||||||||||    
T  53393487 gtaacaaaattttgtttaaatttaaagataactagaaacaaactttgttt 53393438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 24538220 - 24538279
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||| ||||||||||||||||||||  ||||  | |||||||||||||||| |||||||    
T  24538220 attatcataggtaacaaaattttgtttgaattcgaagataacaagaaacaaattttgttt 24538279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 37209934 - 37209977
Alignment:
Q  165 aaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||| |||||| | ||||||||||||||||||||||||    
T  37209934 aaattttgtttaaatttgaagataacaagaaacaaactttgttt 37209977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 45666464 - 45666417
Alignment:
Q  161 aacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||| |||||| |  |||||||||||||||||||||||    
T  45666464 aacaaaattttgtttaaatttcaaaataacaagaaacaaactttgttt 45666417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 282
Target Start/End: Complemental strand, 2492983 - 2492863
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtt 258  Q
    |||||||||||||||| |||||| | |||||||| ||||||| |||||||           ||| ||||||||| |||||| ||  |||||||||| |||    
T  2492983 gtaacaaaattttgtttaaatttgaagataacaaaaaacaaattttgtttttaaaaaaat-aaactttagtttttcaaatagat--agcattaattagtt 2492887  T
Q  259 ttattgaaaaagataagaataatt 282  Q
    ||||| |||||||||||| |||||    
T  2492886 ttattaaaaaagataagagtaatt 2492863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 21342252 - 21342306
Alignment:
Q  256 gttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||||||||||||||||||| ||||| |||||  |||||||| | |||||||||    
T  21342252 gttttattgaaaaagataagagtaattaacaaatgatataattgataaatcatac 21342306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 21956513 - 21956571
Alignment:
Q  248 attaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||||||| ||||||||||||||||||||| || |||| |||| |||||| | |||||||    
T  21956513 attaattagttttattgaaaaagataagagtatttgagaaaagatataagtgacaaatc 21956571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 24074145 - 24074203
Alignment:
Q  247 cattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaat 305  Q
    |||||||| ||||||||||||||| ||||| |||||||||||   ||||||| ||||||    
T  24074145 cattaattagttttattgaaaaagttaagagtaattgacaaagggtataattgacaaat 24074203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 37371447 - 37371501
Alignment:
Q  256 gttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||||||| ||||||||||||||||||   ||||||| | |||||||||    
T  37371447 gttttattgaaaaatataagaataattgacaaagggtataattgataaatcatac 37371501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 46196827 - 46196892
Alignment:
Q  247 cattaatttgttttattgaaaaag-ataagaataattgacaaaaaatataattaacaaatcatact 311  Q
    |||||||| ||||||||||||||  |||||| ||||||||||| | | ||||| ||||||||||||    
T  46196827 cattaattagttttattgaaaaaatataagagtaattgacaaatagtgtaattgacaaatcatact 46196892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 49263051 - 49263014
Alignment:
Q  247 cattaatttgttttattgaaaaagataagaataattga 284  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  49263051 cattaattagttttattgaaaaagataagagtaattga 49263014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 6949271 - 6949223
Alignment:
Q  160 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||| ||||||  ||||| | ||||||||||||||||||||||||    
T  6949271 taacaaaaatttgtttcaatttgaagataacaagaaacaaactttgttt 6949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 19443501 - 19443545
Alignment:
Q  164 aaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||| |||||| | |||||||||||||||| |||||||    
T  19443501 aaaattttgtttaaatttgaagataacaagaaacaaattttgttt 19443545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 46016598 - 46016662
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||| ||| ||||||| ||  |||||| |||| |||||||||||||||| ||||| |||||    
T  46016598 tttagtttaccatatatatatagttttaattagtttgattgaaaaagataagagtaattaacaaa 46016662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 1674777 - 1674844
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||| ||||||||| |||||||||||  |||||||| |||||||||||||| ||||||||||||||||||    
T  1674777 caaactttagtttttcaaatatataa--cattaattagttttattgaaaaatataagaataattgacaaa 1674844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 36319983 - 36320062
Alignment:
Q  225 ttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||||||||||||||| |||  ||||||||| ||||||||||||||||||||| |||||||||||   ||||||| |||||||    
T  36319983 ttagttttccaaatagata--gcattaattagttttattgaaaaagataagagtaattgacaaatggtataattgacaaatc 36320062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 788293 - 788383
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatact 311  Q
    |||| |||| ||||||||||||||||  |||||||| |||||||||||||| || |||||||||||||||   ||||||| | ||||||||||    
T  788293 caaactttatttttccaaatatataa--cattaattagttttattgaaaaatattagaataattgacaaatggtataattgataaatcatact 788383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 2655788 - 2655726
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||||||||||||||  |||||||| |||||||||||||| |||||| |||||||||||    
T  2655788 tttagttttccaaatatataa--cattaattagttttattgaaaaatataagagtaattgacaaa 2655726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 52415092 - 52414965
Alignment:
Q  145 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataa 244  Q
    ||||||||||| | |||||||||||||||| |||| | | ||||| |||||||||| |||||||          |||| |||||||||||||||||||||    
T  52415092 aatcattattacatgtaacaaaattttgtttaaatctgaagataagaagaaacaaattttgtttaaaaaaaa--caaactttagttttccaaatatataa 52414995  T
Q  245 agcattaatttgttttattgaaaaagataaga 276  Q
      |||||||| |||||||| ||||||||||||    
T  52414994 --cattaattagttttattaaaaaagataaga 52414965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 4395994 - 4396054
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||||||| ||||||| |||||||| | |||| |||||||||||||||||    
T  4395994 cattattataggtaacaaagttttgtttaaattttaagctaacgagaaacaaactttgttt 4396054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 13254772 - 13254852
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||||||| |||||||| |||  ||||||||| ||||||||||||||||||||| ||||||| ||||  ||||||| |||||||    
T  13254772 tttagttctccaaatagata--gcattaattagttttattgaaaaagataagagtaattgataaaaggtataattgacaaatc 13254852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 11238258 - 11238320
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    ||||||||||||||||||||   |||||||| |||||||||||||| ||||||||||||| ||||    
T  11238258 tttagttttccaaatatatat--cattaattagttttattgaaaaatataagaataattgccaaa 11238320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 39386831 - 39386782
Alignment:
Q  159 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  39386831 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 39386782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 23699441 - 23699490
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataag 275  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  23699441 tttagttttccaaatatata--gcattaattagttttattgaaaaagataag 23699490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 1394781 - 1394828
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaa 196  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||||    
T  1394781 attagtataggtaacaaaattttgtttaaattttaagataacaagaaa 1394828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 21535849 - 21535892
Alignment:
Q  245 agcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||||||| |||||||||||||| ||||||||||||||||||    
T  21535849 agcattaattagttttattgaaaaatataagaataattgacaaa 21535892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 43021208 - 43021120
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatactctt 314  Q
    ||||||||| |||||||||||  |||||||| |||||||||| ||| |||||| |||||| ||||   ||||||| ||||||| |||||||    
T  43021208 tttagtttttcaaatatataa--cattaattagttttattgataaatataagagtaattggcaaatggtataattgacaaatcgtactctt 43021120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 10430538 - 10430597
Alignment:
Q  227 agttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||| ||||||||||  ||||||||| |||||||| |||||||||||| |||||||||||    
T  10430538 agttttgcaaatatata--gcattaattagttttattaaaaaagataagagtaattgacaaa 10430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 23698817 - 23698755
Alignment:
Q  248 attaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    ||||||| |||||||| ||||| |||||| |||||||||||  |||||||| |||||||||||    
T  23698817 attaattagttttatttaaaaatataagagtaattgacaaaggatataattgacaaatcatac 23698755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 37710398 - 37710456
Alignment:
Q  146 atcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 204  Q
    ||||||||||||||||| ||||||||||| |||||| | |||| ||| |||||||||||    
T  37710398 atcattattataggtaagaaaattttgtttaaatttgaagataccaaaaaacaaacttt 37710456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 40519011 - 40519053
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatgcagt 43  Q
    ||||||||||||||| ||| |||||||||||||||||||||||    
T  40519011 aatgagtcttccactgtttcttccttttgaacattcatgcagt 40519053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 40519207 - 40519262
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataaga 276  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||| ||||||||||||    
T  40519207 caaactttagttttccaaatatata--gcattaattagttttattaaaaaagataaga 40519262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 788205 - 788258
Alignment:
Q  155 ataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    |||||||||||||||||||| |||||| | |||||||||||| ||| |||||||    
T  788205 ataggtaacaaaattttgtttaaatttgaagataacaagaaataaattttgttt 788258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 1674694 - 1674754
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaa 200  Q
    ||||||| |||||| |||| |||||||||||| || |||||| | ||||||||||||||||    
T  1674694 catggaaccattatcatagataacaaaattttatttaaatttgaagataacaagaaacaaa 1674754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 306
Target Start/End: Original strand, 6295699 - 6295840
Alignment:
Q  161 aacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagcattaatttgtttt 260  Q
    |||||||||||||| |||||| | |||||||||||||||| |||||||           |||| |||||||| |||||| ||  |||||||||| |||||    
T  6295699 aacaaaattttgtttaaatttgaagataacaagaaacaaattttgtttaaaaaaaaa--aaaaattagtttttcaaatagat--agcattaattagtttt 6295794  T
Q  261 attgaaaaagataagaataattgacaaaaaatataattaacaaatc 306  Q
    ||| |||||||||| | ||| |||||||   ||||||||| |||||    
T  6295795 atttaaaaagataaaagtaagtgacaaagggtataattaataaatc 6295840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 19269885 - 19269825
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||| |||| ||||||  ||||| | ||||||||||| ||||||||||||    
T  19269885 cattattataggtaaaaaaaatttgtttcaatttgaagataacaagaagcaaactttgttt 19269825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1674563 - 1674606
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatgcagtc 44  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||    
T  1674563 aatgagtcttccactctttcttccttttaaacattcatgaagtc 1674606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 4671498 - 4671443
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataaga 276  Q
    |||| ||||||||||||||||||||  | ||||||| |||||||| ||||||||||||    
T  4671498 caaattttagttttccaaatatata--gtattaattagttttattaaaaaagataaga 4671443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 10101679 - 10101741
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattga 284  Q
    |||| |||||||||||||||| |||  |||||| || ||||||||||||||||||||| |||||||    
T  10101679 caaactttagttttccaaatagata--gcatta-ttagttttattgaaaaagataagagtaattga 10101741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 23699203 - 23699237
Alignment:
Q  5 agtcttccactctttattccttttgaacattcatg 39  Q
    ||||||||||||||| |||||||||||||||||||    
T  23699203 agtcttccactctttcttccttttgaacattcatg 23699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 31623119 - 31623182
Alignment:
Q  219 caaaatttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattga 284  Q
    |||| |||||||||| ||||||||||  ||||||||  |||||| |||||| ||||||||||||||    
T  31623119 caaattttagttttcgaaatatataa--cattaattaattttatggaaaaatataagaataattga 31623182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 288
Target Start/End: Complemental strand, 530 - 399
Alignment:
Q  149 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaatatataaagca 248  Q
    ||||| |||| ||||||||||||||| |||||| | ||| |||||||||||| |||||||          |||| |||||||||| ||||||||||  ||    
T  530 attatcatagataacaaaattttgtttaaatttgaagatgacaagaaacaaattttgttttaaaa-----caaactttagttttc-aaatatataa--ca 439  T
Q  249 ttaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||||| |||||||||||||  ||||||||||||||||||    
T  438 ttaattagttttattgaaaattataagaataattgacaaa 399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 14994 - 14911
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||||||||||||||  |||||||| ||||||||||||| ||| ||  ||||||||||||  ||||||| |||||||||||    
T  14994 tttagttttccaaatatataa--cattaattagttttattgaaaa-gatgagggtaattgacaaaaggtataattgacaaatcatac 14911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 15171 - 15231
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 208  Q
    ||||||||||||||||||| ||| ||| |||||| | ||||| ||||||||| ||| ||||    
T  15171 cattattataggtaacaaagtttagtttaaatttgaagataataagaaacaatcttcgttt 15231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 256820 - 256732
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatactctt 314  Q
    |||||||||||||||| ||||  |||||||| |||||||||||||||||||||  ||||||||||   ||||||| ||||||  |||||||    
T  256820 tttagttttccaaatagataa--cattaattagttttattgaaaaagataagagaaattgacaaatggtataattgacaaatggtactctt 256732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 6349 - 6405
Alignment:
Q  148 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 204  Q
    ||||||||||| ||||||||||||||| |||| ||| |||||||||||| |||||||    
T  6349 cattattatagataacaaaattttgtttaaatattaagataacaagaaataaacttt 6405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 6403 - 6487
Alignment:
Q  224 tttagttttccaaatatataaagcattaatttgttttattgaaaaagataagaataattgacaaaaaatataattaacaaatcatac 310  Q
    |||||||||||||||||||||  || |||||  ||||||||||||| |||  | |||||||||||  |||||||| | |||||||||    
T  6403 tttagttttccaaatatataa--caataattaattttattgaaaaacatagaagtaattgacaaaggatataattgataaatcatac 6487  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 288
Target Start/End: Original strand, 46510 - 46650
Alignment:
Q  140 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtttnnnnnnnnnncaaaatttagttttccaaata 239  Q
    |||||||  ||||| |||| ||||||||||||||| |||||| | ||| |||||||||||| |||||||          |||| |||| |||| ||||||    
T  46510 catggaactattatcatagataacaaaattttgtttaaatttgaagatgacaagaaacaaattttgttt-----taaaacaaactttaatttt-caaata 46603  T
Q  240 tataaagcattaatttgttttattgaaaaagataagaataattgacaaa 288  Q
    |||  ||||||||||  ||||||||||||  ||||||||||||||||||    
T  46604 tat--agcattaattaattttattgaaaattataagaataattgacaaa 46650  T

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Target: scaffold0841 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4477 - 4520
Alignment:
Q  1 aatgagtcttccactctttattccttttgaacattcatgcagtc 44  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||||    
T  4477 aatgattcttccactctttcttccttttgaacattcatggagtc 4520  T

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Target: scaffold0242 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 14955 - 14895
Alignment:
Q  145 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttg 205  Q
    ||||||||||||| |||||||||||||| | |||||| | |||||||| ||| ||| ||||    
T  14955 aatcattattatatgtaacaaaattttggttaaatttaaagataacaataaataaattttg 14895  T

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Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 23790 - 23730
Alignment:
Q  145 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttg 205  Q
    ||||||||||||| |||||||||||||| | |||||| | |||||||| ||| ||| ||||    
T  23790 aatcattattatatgtaacaaaattttggttaaatttaaagataacaataaataaattttg 23730  T

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