View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18039_low_10 (Length: 367)
Name: NF18039_low_10
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18039_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 39727728 - 39728063
Alignment:
| Q |
18 |
attatatagaataaggctggctaataattcttggtaaagaattctgttcaatagttacatatatagctaaatatgtaccgagaatattctaatcctaaat |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39727728 |
attatatagaataaggctgcctaataattcttggtaaagaattctgttcaatagttacatatatagctaaatatgtaccgagaatattcta-tcctaaat |
39727826 |
T |
|
| Q |
118 |
gggcgccaattgcatatttacaactctcccttcaagcaatgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39727827 |
gggcgccaattgcatatttacaactctcccttcaagcaatgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtg |
39727926 |
T |
|
| Q |
218 |
aaaacatttgcgaattgaagtccaaaagaccaggtcactatctaatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39727927 |
aaaacatttgcgaattgaagtccaaaagaccaggtcactatctaatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtg |
39728026 |
T |
|
| Q |
318 |
ttgggttacatgcattgctaatggaagaagtattatc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39728027 |
ttgggttacatgcattgctaatggaagaagtattatc |
39728063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University