View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18039_low_12 (Length: 262)

Name: NF18039_low_12
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18039_low_12
NF18039_low_12
[»] chr7 (1 HSPs)
chr7 (2-244)||(39169521-39169763)
[»] chr5 (5 HSPs)
chr5 (10-59)||(26516205-26516254)
chr5 (13-60)||(31687931-31687978)
chr5 (10-60)||(20982249-20982299)
chr5 (7-59)||(42582818-42582871)
chr5 (10-58)||(40534102-40534150)
[»] chr4 (1 HSPs)
chr4 (25-59)||(47771902-47771936)
[»] chr8 (1 HSPs)
chr8 (10-59)||(4389850-4389899)
[»] chr1 (1 HSPs)
chr1 (10-59)||(47885122-47885171)
[»] chr2 (1 HSPs)
chr2 (10-58)||(43965244-43965292)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 39169521 - 39169763
Alignment:
Q  2 gtgtaatggaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagcagctgatttcagaactaagttccaaacagagaaaataaacat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169521 gtgtaatggaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagcagctgatttcagaactaagttccaaacagagaaaataaacat 39169620  T
Q  102 gcacaaattctttgaataagttgatannnnnnnataagaatttattcagaacctacgcactcatctatctacatacagacaattgtaacagaattgagat 201  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169621 gcacaaattctttgaataagttgatatttttttataagaatttattcagaacctacgcactcatctatctacatacagacaattgtaacagaattgagat 39169720  T
Q  202 aaaaactttcacgataagctaacaaaaacatttcacaaaactg 244  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39169721 aaaaactttcacgataagctaacaaaaacatttcacaaaactg 39169763  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 26516254 - 26516205
Alignment:
Q  10 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagc 59  Q
    |||||||||||| | ||||| || ||||||||||||||||||||||||||    
T  26516254 gaaatagcttatacataagcacttatatgataagcgcttatgctataagc 26516205  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 31687978 - 31687931
Alignment:
Q  13 atagcttattcgtaagcgctcatatgataagcgcttatgctataagca 60  Q
    ||||||||||| ||||| || ||||||||||||| |||||||||||||    
T  31687978 atagcttattcataagcacttatatgataagcgcctatgctataagca 31687931  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 20982249 - 20982299
Alignment:
Q  10 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagca 60  Q
    |||||||||||| | ||||| || ||||||||||| |||||||||||||||    
T  20982249 gaaatagcttatacataagcacttatatgataagcacttatgctataagca 20982299  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 42582871 - 42582818
Alignment:
Q  7 atggaaatagcttattcgtaagcgctcat-atgataagcgcttatgctataagc 59  Q
    ||||||||||||||| | |||||||| || ||||||| ||||||||||||||||    
T  42582871 atggaaatagcttatacataagcgcttattatgataaacgcttatgctataagc 42582818  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 40534150 - 40534102
Alignment:
Q  10 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataag 58  Q
    |||||||||||| | ||||  || |||||||||||||||||||||||||    
T  40534150 gaaatagcttatacataagtccttatatgataagcgcttatgctataag 40534102  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 47771936 - 47771902
Alignment:
Q  25 taagcgctcatatgataagcgcttatgctataagc 59  Q
    |||||||| ||||||||||||||||||||||||||    
T  47771936 taagcgcttatatgataagcgcttatgctataagc 47771902  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 4389899 - 4389850
Alignment:
Q  10 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagc 59  Q
    |||||||||||||| || | ||||||||||||||| ||| ||||||||||    
T  4389899 gaaatagcttattcatatgtgctcatatgataagcacttctgctataagc 4389850  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 47885122 - 47885171
Alignment:
Q  10 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataagc 59  Q
    |||||| ||||||| |||||  | ||||||||||||||||||||||||||    
T  47885122 gaaataacttattcataagcaattatatgataagcgcttatgctataagc 47885171  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 43965244 - 43965292
Alignment:
Q  10 gaaatagcttattcgtaagcgctcatatgataagcgcttatgctataag 58  Q
    |||||||||||||| ||| | || |||||||||| ||||||||||||||    
T  43965244 gaaatagcttattcataaacacttatatgataagtgcttatgctataag 43965292  T

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