View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18039_low_15 (Length: 250)

Name: NF18039_low_15
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18039_low_15
NF18039_low_15
[»] chr7 (10 HSPs)
chr7 (1-241)||(39169271-39169511)
chr7 (191-228)||(47941310-47941347)
chr7 (177-228)||(27517312-27517364)
chr7 (176-216)||(33645991-33646031)
chr7 (176-230)||(46056040-46056095)
chr7 (192-230)||(39907788-39907826)
chr7 (176-228)||(3968787-3968840)
chr7 (185-230)||(48507707-48507752)
chr7 (190-222)||(21453287-21453319)
chr7 (192-232)||(46104349-46104389)
[»] chr4 (7 HSPs)
chr4 (176-241)||(7694040-7694106)
chr4 (173-232)||(42866051-42866111)
chr4 (176-238)||(43372001-43372062)
chr4 (176-238)||(18628573-18628636)
chr4 (192-232)||(16200028-16200068)
chr4 (179-230)||(28300332-28300384)
chr4 (179-230)||(50742869-50742921)
[»] chr8 (6 HSPs)
chr8 (179-239)||(42215339-42215400)
chr8 (195-230)||(7646191-7646226)
chr8 (188-230)||(38537576-38537618)
chr8 (180-239)||(6509337-6509397)
chr8 (176-227)||(8062317-8062369)
chr8 (192-228)||(32841355-32841391)
[»] chr6 (10 HSPs)
chr6 (176-232)||(33887813-33887870)
chr6 (176-229)||(7945914-7945967)
chr6 (194-228)||(769126-769160)
chr6 (196-233)||(7446530-7446567)
chr6 (176-216)||(19275666-19275707)
chr6 (177-232)||(1401092-1401148)
chr6 (196-228)||(2735056-2735088)
chr6 (193-241)||(4246384-4246432)
chr6 (188-228)||(10860958-10860998)
chr6 (176-235)||(28088252-28088312)
[»] chr3 (6 HSPs)
chr3 (179-231)||(24785189-24785242)
chr3 (192-230)||(25447291-25447329)
chr3 (180-239)||(1816559-1816619)
chr3 (192-228)||(22203417-22203453)
chr3 (191-239)||(38462257-38462305)
chr3 (180-227)||(41724199-41724247)
[»] chr2 (10 HSPs)
chr2 (176-232)||(42419980-42420037)
chr2 (176-239)||(35486393-35486457)
chr2 (193-237)||(33931618-33931662)
chr2 (188-239)||(13866865-13866916)
chr2 (173-214)||(42817403-42817445)
chr2 (191-228)||(39621938-39621975)
chr2 (195-239)||(9551555-9551599)
chr2 (179-218)||(10884554-10884594)
chr2 (192-232)||(33319859-33319899)
chr2 (176-215)||(36852472-36852512)
[»] chr5 (9 HSPs)
chr5 (176-222)||(8651383-8651429)
chr5 (189-239)||(9106797-9106847)
chr5 (176-241)||(17368650-17368716)
chr5 (176-222)||(32408622-32408669)
chr5 (180-222)||(9174809-9174851)
chr5 (176-232)||(4619690-4619747)
chr5 (176-220)||(30217077-30217122)
chr5 (176-239)||(16889711-16889775)
chr5 (195-239)||(18857450-18857494)
[»] chr1 (5 HSPs)
chr1 (176-232)||(35017559-35017616)
chr1 (192-228)||(7137045-7137081)
chr1 (179-230)||(7472296-7472348)
chr1 (176-230)||(6279384-6279439)
chr1 (190-238)||(33527192-33527240)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39169271 - 39169511
Alignment:
Q  1 aagccaacaattcacagcagaaagaagctgtaaaacaaacaaattctcatatacattattcctaaaggatgatctgttcaaacacataaaggaccttttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169271 aagccaacaattcacagcagaaagaagctgtaaaacaaacaaattctcatatacattattcctaaaggatgatctgttcaaacacataaaggaccttttg 39169370  T
Q  101 gcttgacttattcaagtttatctaacggcatagccacttgttacactattcaggagaacttatgaaaaaacctacttccataagctctcaggatagctta 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169371 gcttgacttattcaagtttatctaccggcatagccacttgttacactattcaggagaacttatgaaaaaacctacttccataagctctcaggatagctta 39169470  T
Q  201 tgaaaacagtttatagattatacaaaaacagtctgacttca 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39169471 tgaaaacagtttatagattatacaaaaacagtctgacttca 39169511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 47941347 - 47941310
Alignment:
Q  191 ggatagcttatgaaaacagtttatagattatacaaaaa 228  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  47941347 ggatagcttatgaaaacagtttatagattatactaaaa 47941310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 27517312 - 27517364
Alignment:
Q  177 tccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaa 228  Q
    ||||||||||||| |||||| |||||||||||||||| ||| |||||||||||    
T  27517312 tccataagctctccaggataacttatgaaaacagtttgtagcttatacaaaaa 27517364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 33645991 - 33646031
Alignment:
Q  176 ttccataagctctcaggatagcttatgaaaacagtttatag 216  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  33645991 ttccataagctctccagatagcttatgaaaacagtttatag 33646031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 46056040 - 46056095
Alignment:
Q  176 ttccataagctct-caggatagcttatgaaaacagtttatagattatacaaaaaca 230  Q
    ||||||||||||| | |||||||||||||||||| ||||||| ||| |||||||||    
T  46056040 ttccataagctctacgggatagcttatgaaaacaatttatagcttacacaaaaaca 46056095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 39907826 - 39907788
Alignment:
Q  192 gatagcttatgaaaacagtttatagattatacaaaaaca 230  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  39907826 gatagtttatgaaaacagtttatagcttatacaaaaaca 39907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 3968787 - 3968840
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaa 228  Q
    |||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||    
T  3968787 ttccataaactctccaggatagcttatgaaaatagcttatatattatacaaaaa 3968840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 48507752 - 48507707
Alignment:
Q  185 ctctcaggatagcttatgaaaacagtttatagattatacaaaaaca 230  Q
    |||| ||||| |||||||||||||||||||||  ||||||||||||    
T  48507752 ctctaaggatggcttatgaaaacagtttatagcatatacaaaaaca 48507707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 21453319 - 21453287
Alignment:
Q  190 aggatagcttatgaaaacagtttatagattata 222  Q
    ||||||||||||||||||||||||||| |||||    
T  21453319 aggatagcttatgaaaacagtttatagcttata 21453287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 46104349 - 46104389
Alignment:
Q  192 gatagcttatgaaaacagtttatagattatacaaaaacagt 232  Q
    |||| |||||||||||||||||||| |||||| ||||||||    
T  46104349 gataacttatgaaaacagtttatagcttatacgaaaacagt 46104389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 7694040 - 7694106
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgacttca 241  Q
    |||||||| ||||| |||||| ||||||||||||| |||||| ||||||||||||||| ||||||||    
T  7694040 ttccataaactctccaggataacttatgaaaacagcttatagcttatacaaaaacagtttgacttca 7694106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 42866111 - 42866051
Alignment:
Q  173 tacttccataagctctca-ggatagcttatgaaaacagtttatagattatacaaaaacagt 232  Q
    |||||||||||||||||| ||||||||||||||||||  |||||| ||||| |||||||||    
T  42866111 tacttccataagctctcaaggatagcttatgaaaacaacttatagcttatataaaaacagt 42866051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 43372001 - 43372062
Alignment:
Q  176 ttccataagctctcaggatagcttatgaaaacagtttatagattatacaaaaacagtctgact 238  Q
    |||||||||||||  ||||||||||||||| |||||||||| ||||| ||||||||| |||||    
T  43372001 ttccataagctctt-ggatagcttatgaaatcagtttatagcttatataaaaacagtttgact 43372062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 18628573 - 18628636
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgact 238  Q
    |||||||||||||| | |||| |||||||||||||||||||  ||||| ||||||||| |||||    
T  18628573 ttccataagctctccaagataacttatgaaaacagtttataacttatataaaaacagtttgact 18628636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 16200028 - 16200068
Alignment:
Q  192 gatagcttatgaaaacagtttatagattatacaaaaacagt 232  Q
    |||||||||||||||||| ||||||  ||||||||||||||    
T  16200028 gatagcttatgaaaacagcttatagcatatacaaaaacagt 16200068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 28300332 - 28300384
Alignment:
Q  179 cataagctct-caggatagcttatgaaaacagtttatagattatacaaaaaca 230  Q
    |||||||||| || |||||| |||||||| ||||||||| |||||||||||||    
T  28300332 cataagctcttcaagatagcctatgaaaatagtttatagcttatacaaaaaca 28300384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 50742869 - 50742921
Alignment:
Q  179 cataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaaca 230  Q
    ||||||||||| |||||||||||||||||||  ||||  ||||||||||||||    
T  50742869 cataagctctccaggatagcttatgaaaacaagttatttattatacaaaaaca 50742921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 42215339 - 42215400
Alignment:
Q  179 cataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    ||||||||||| |||||||| |||||||| || |||||||||||||||||||||| ||||||    
T  42215339 cataagctctccaggatagcatatgaaaataggttatagattatacaaaaacagtttgactt 42215400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 7646226 - 7646191
Alignment:
Q  195 agcttatgaaaacagtttatagattatacaaaaaca 230  Q
    |||||||||| |||||||||||||||||||||||||    
T  7646226 agcttatgaagacagtttatagattatacaaaaaca 7646191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 38537618 - 38537576
Alignment:
Q  188 tcaggatagcttatgaaaacagtttatagattatacaaaaaca 230  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||    
T  38537618 tcaggatagtttatgaaagcagcttatagattatacaaaaaca 38537576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 6509337 - 6509397
Alignment:
Q  180 ataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    |||||||||| |||||||||||||||||||| |||||| ||||| ||| ||| | ||||||    
T  6509337 ataagctctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgactt 6509397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 8062369 - 8062317
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaa 227  Q
    |||||||| ||||| | |||||||||||||||||| |||||| ||||||||||    
T  8062369 ttccataatctctctaagatagcttatgaaaacagcttatagcttatacaaaa 8062317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 32841355 - 32841391
Alignment:
Q  192 gatagcttatgaaaacagtttatagattatacaaaaa 228  Q
    |||||||||||||||||| |||||| |||||||||||    
T  32841355 gatagcttatgaaaacagcttatagcttatacaaaaa 32841391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 33887870 - 33887813
Alignment:
Q  176 ttccataagc-tctcaggatagcttatgaaaacagtttatagattatacaaaaacagt 232  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||    
T  33887870 ttccataagcatttcaggatagcttatgaaaacagtttattgattatactaaaacagt 33887813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 7945914 - 7945967
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaac 229  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  7945914 ttccataagctctccaggatagct-atgaaaacaggttatagattatacaaaaac 7945967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 769160 - 769126
Alignment:
Q  194 tagcttatgaaaacagtttatagattatacaaaaa 228  Q
    ||||||||||||||||||||||| |||||||||||    
T  769160 tagcttatgaaaacagtttatagcttatacaaaaa 769126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 7446530 - 7446567
Alignment:
Q  196 gcttatgaaaacagtttatagattatacaaaaacagtc 233  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  7446530 gcttatgaaaacagcttatagcttatacaaaaacagtc 7446567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 19275666 - 19275707
Alignment:
Q  176 ttccataagctct-caggatagcttatgaaaacagtttatag 216  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  19275666 ttccataagctcttcatgatagcttatgaaaacagtttatag 19275707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 1401148 - 1401092
Alignment:
Q  177 tccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagt 232  Q
    ||||||||||||| | |||||||||||||||||| |||||| |||||| ||| ||||    
T  1401148 tccataagctctccatgatagcttatgaaaacagcttatagcttatactaaagcagt 1401092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 2735088 - 2735056
Alignment:
Q  196 gcttatgaaaacagtttatagattatacaaaaa 228  Q
    |||||||||||||| ||||||||||||||||||    
T  2735088 gcttatgaaaacagcttatagattatacaaaaa 2735056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 4246432 - 4246384
Alignment:
Q  193 atagcttatgaaaacagtttatagattatacaaaaacagtctgacttca 241  Q
    ||||||||||||||||| ||||||||||||  ||||||  |||||||||    
T  4246432 atagcttatgaaaacagcttatagattatatgaaaacatactgacttca 4246384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 10860998 - 10860958
Alignment:
Q  188 tcaggatagcttatgaaaacagtttatagattatacaaaaa 228  Q
    ||||||||||||||||||| || ||||||||||||| ||||    
T  10860998 tcaggatagcttatgaaaatagcttatagattatacgaaaa 10860958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 28088252 - 28088312
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctg 235  Q
    |||||| ||||||| | ||||||||||||||||||||||||| |||||  |||||| ||||    
T  28088252 ttccatgagctctccatgatagcttatgaaaacagtttatagcttatatgaaaacaatctg 28088312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 24785242 - 24785189
Alignment:
Q  179 cataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacag 231  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  24785242 cataagctctcgaggatagcttatgaaaacacgttatagattatacaaaaacag 24785189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 25447291 - 25447329
Alignment:
Q  192 gatagcttatgaaaacagtttatagattatacaaaaaca 230  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  25447291 gatagcttatgaaaacagtttatagcttatacaaaaaca 25447329  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 1816619 - 1816559
Alignment:
Q  180 ataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    |||||||||| || ||||||||||||||||  |||||  ||||||||||||||| ||||||    
T  1816619 ataagctctccagtatagcttatgaaaacaacttatatcttatacaaaaacagtttgactt 1816559  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 22203453 - 22203417
Alignment:
Q  192 gatagcttatgaaaacagtttatagattatacaaaaa 228  Q
    |||||||||||||||||  ||||||||||||||||||    
T  22203453 gatagcttatgaaaacaacttatagattatacaaaaa 22203417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 38462305 - 38462257
Alignment:
Q  191 ggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    ||||||||||||||||||||||||||  ||||  |||||||| ||||||    
T  38462305 ggatagcttatgaaaacagtttatagcatatatgaaaacagtttgactt 38462257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 41724247 - 41724199
Alignment:
Q  180 ataagctctca-ggatagcttatgaaaacagtttatagattatacaaaa 227  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  41724247 ataagctctcaaggatagctgatgaaaacagtttatagcttatataaaa 41724199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 42420037 - 42419980
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagt 232  Q
    ||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||    
T  42420037 ttccataagctatccaggatagcttatgaaaatagcttatagattatacaaaaacagt 42419980  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 35486393 - 35486457
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    |||||||| ||||| ||||||||||  |||||||| |||||||||||||||||||||| ||||||    
T  35486393 ttccataacctctccaggatagcttgcgaaaacagcttatagattatacaaaaacagtttgactt 35486457  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 33931618 - 33931662
Alignment:
Q  193 atagcttatgaaaacagtttatagattatacaaaaacagtctgac 237  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||||    
T  33931618 atagcttatgaaaacagcttatagcttatacaaaaacaatctgac 33931662  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 13866916 - 13866865
Alignment:
Q  188 tcaggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    ||||||||||| ||||||| || |||||||||||| ||||||||| ||||||    
T  13866916 tcaggatagctaatgaaaagagcttatagattatataaaaacagtttgactt 13866865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 42817403 - 42817445
Alignment:
Q  173 tacttccataagctct-caggatagcttatgaaaacagtttat 214  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  42817403 tacttccataagctcttcagaatagcttatgaaaacagtttat 42817445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 39621975 - 39621938
Alignment:
Q  191 ggatagcttatgaaaacagtttatagattatacaaaaa 228  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  39621975 ggataacttatgaaaacagcttatagattatacaaaaa 39621938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 9551599 - 9551555
Alignment:
Q  195 agcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    |||||||||||| || |||||| ||||||||||||||| ||||||    
T  9551599 agcttatgaaaataggttatagtttatacaaaaacagtttgactt 9551555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 10884554 - 10884594
Alignment:
Q  179 cataagctctc-aggatagcttatgaaaacagtttatagat 218  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  10884554 cataagctctctaggatagcttatgaaaacagcttatagat 10884594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 33319859 - 33319899
Alignment:
Q  192 gatagcttatgaaaacagtttatagattatacaaaaacagt 232  Q
    ||||| |||||||||||||||||||  ||||||||||||||    
T  33319859 gatagtttatgaaaacagtttatagtatatacaaaaacagt 33319899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 36852512 - 36852472
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttata 215  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  36852512 ttccataagctctccaagatagcttatgaaaacagtttata 36852472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 8651383 - 8651429
Alignment:
Q  176 ttccataagctctcaggatagcttatgaaaacagtttatagattata 222  Q
    |||||||||||| ||| |||||||||||||||||||||||| |||||    
T  8651383 ttccataagctcccagaatagcttatgaaaacagtttatagcttata 8651429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 9106847 - 9106797
Alignment:
Q  189 caggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    ||||||| |||||||||| || |||||||||||||||||||||| ||||||    
T  9106847 caggataacttatgaaaatagcttatagattatacaaaaacagtttgactt 9106797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 17368716 - 17368650
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgacttca 241  Q
    |||||||| ||||| | |||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  17368716 ttccataacctctccaagatagcttatgaaaacaacttatagattacacaaaaacagtttgacttca 17368650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 32408622 - 32408669
Alignment:
Q  176 ttccataagctct-caggatagcttatgaaaacagtttatagattata 222  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  32408622 ttccataagctcttcaggatagcttatgaaaatagtttatagcttata 32408669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 9174851 - 9174809
Alignment:
Q  180 ataagctctcaggatagcttatgaaaacagtttatagattata 222  Q
    |||||||| ||| |||||||||||||||||||||||| |||||    
T  9174851 ataagctcccagaatagcttatgaaaacagtttatagcttata 9174809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 4619747 - 4619690
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagt 232  Q
    ||||||||| |||| | ||||||||||||| ||||||||||||||||| | |||||||    
T  4619747 ttccataagttctccatgatagcttatgaagacagtttatagattatatagaaacagt 4619690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 30217122 - 30217077
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagatta 220  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||||    
T  30217122 ttccataagctctccaggatagcttatgaaagcagcttatagatta 30217077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 16889775 - 16889711
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    |||||||| ||||| || ||||||||||||||||| |||||| || || ||||||||| ||||||    
T  16889775 ttccataaactctctagcatagcttatgaaaacagcttatagcttctataaaaacagtttgactt 16889711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 18857450 - 18857494
Alignment:
Q  195 agcttatgaaaacagtttatagattatacaaaaacagtctgactt 239  Q
    ||||||||||||||| |||||||||||| ||||||| | ||||||    
T  18857450 agcttatgaaaacagcttatagattatagaaaaacaatttgactt 18857494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 35017616 - 35017559
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaacagt 232  Q
    |||||||||||||| |||| |||||||||||||||  |||||||||||| ||||||||    
T  35017616 ttccataagctctccaggacagcttatgaaaacagcatatagattatacgaaaacagt 35017559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 7137045 - 7137081
Alignment:
Q  192 gatagcttatgaaaacagtttatagattatacaaaaa 228  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7137045 gatagcttatgaaaacagcttatagattatacaaaaa 7137081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 7472348 - 7472296
Alignment:
Q  179 cataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaaca 230  Q
    ||||||||||| | ||||||||||| |||||| ||||||||||||||||||||    
T  7472348 cataagctctccaagatagcttatggaaacagcttatagattatacaaaaaca 7472296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 6279439 - 6279384
Alignment:
Q  176 ttccataagctctc-aggatagcttatgaaaacagtttatagattatacaaaaaca 230  Q
    |||||||||||||| ||||||||||||||||| |||||| || |||||| ||||||    
T  6279439 ttccataagctctctaggatagcttatgaaaatagtttaaagcttatacgaaaaca 6279384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 33527192 - 33527240
Alignment:
Q  190 aggatagcttatgaaaacagtttatagattatacaaaaacagtctgact 238  Q
    |||||| ||||||||||||| ||||||||||||  |||||||| |||||    
T  33527192 aggataacttatgaaaacagcttatagattatatgaaaacagtttgact 33527240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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