View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18039_low_16 (Length: 244)

Name: NF18039_low_16
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18039_low_16
NF18039_low_16
[»] chr2 (8 HSPs)
chr2 (16-235)||(15996820-15997038)
chr2 (185-234)||(21620768-21620817)
chr2 (185-234)||(26051200-26051249)
chr2 (189-232)||(15080088-15080130)
chr2 (188-234)||(11563421-11563467)
chr2 (185-234)||(4860579-4860627)
chr2 (187-232)||(31596951-31596996)
chr2 (185-225)||(32227431-32227471)
[»] chr3 (6 HSPs)
chr3 (185-234)||(50170585-50170634)
chr3 (185-225)||(37662918-37662958)
chr3 (186-222)||(3382572-3382608)
chr3 (191-227)||(50129033-50129069)
chr3 (185-225)||(28451856-28451896)
chr3 (191-227)||(50129171-50129207)
[»] chr1 (10 HSPs)
chr1 (185-234)||(19234792-19234841)
chr1 (186-232)||(25901896-25901942)
chr1 (191-227)||(34967758-34967794)
chr1 (186-234)||(38081700-38081750)
chr1 (185-231)||(30058347-30058393)
chr1 (189-234)||(36567456-36567501)
chr1 (185-225)||(298195-298235)
chr1 (185-225)||(3491551-3491591)
chr1 (185-225)||(14149442-14149482)
chr1 (185-225)||(52413957-52413997)
[»] chr6 (4 HSPs)
chr6 (185-232)||(11753073-11753120)
chr6 (185-223)||(12622500-12622538)
chr6 (185-234)||(5605238-5605287)
chr6 (187-234)||(15528452-15528499)
[»] chr4 (16 HSPs)
chr4 (186-232)||(52355968-52356014)
chr4 (185-234)||(30666828-30666877)
chr4 (186-234)||(22318094-22318142)
chr4 (188-235)||(51164636-51164683)
chr4 (189-234)||(10401598-10401643)
chr4 (186-234)||(46963964-46964012)
chr4 (189-232)||(13435479-13435522)
chr4 (180-231)||(45891757-45891808)
chr4 (189-234)||(5817325-5817370)
chr4 (190-235)||(25064192-25064237)
chr4 (189-234)||(37861163-37861208)
chr4 (185-226)||(54933086-54933127)
chr4 (185-225)||(22409468-22409508)
chr4 (185-225)||(32280428-32280468)
chr4 (178-222)||(46393114-46393158)
chr4 (188-232)||(53209998-53210042)
[»] chr8 (4 HSPs)
chr8 (189-234)||(8059901-8059946)
chr8 (185-232)||(30875630-30875677)
chr8 (188-234)||(8753345-8753391)
chr8 (185-225)||(40819427-40819467)
[»] chr7 (9 HSPs)
chr7 (187-234)||(6271389-6271436)
chr7 (185-232)||(43132016-43132063)
chr7 (196-234)||(31765469-31765507)
chr7 (186-225)||(40720365-40720404)
chr7 (190-228)||(37828459-37828497)
chr7 (191-232)||(5505602-5505643)
chr7 (177-214)||(41888943-41888980)
chr7 (191-227)||(18700065-18700101)
chr7 (192-232)||(30961666-30961706)
[»] chr5 (4 HSPs)
chr5 (186-234)||(11991559-11991607)
chr5 (185-225)||(40113066-40113106)
chr5 (179-232)||(523618-523671)
chr5 (186-234)||(28735399-28735446)
[»] scaffold0024 (1 HSPs)
scaffold0024 (189-231)||(45935-45977)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 15997038 - 15996820
Alignment:
Q  16 caaaagagatataaaagtcaaatattgtttgtctaaaaagttgaatcaagtgcatgtcttttggaattaatcattgaggttacaaatattctaggtatca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15997038 caaaagagatataaaagtcaaatattgtttgtctaaaaagttgaatcaagtgcatgtcttttggaattaatcattgaggttacaaatattctaggtatca 15996939  T
Q  116 gaagttataaatatgtcattaattccttcgacattacttacttaaaagtactctctcactaataaaatgagggaaatgttaacttgtgcccttggggcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  15996938 gaagttataaatatgtcattaattccttcgacattacttactt-aaagtactctctcactaataaaatgagggaaatgttaacttgtactcttggggcat 15996840  T
Q  216 aagttaagaaaccaaatgtg 235  Q
    ||||||||||||||||||||    
T  15996839 aagttaagaaaccaaatgtg 15996820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 21620817 - 21620768
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  21620817 agggaaatgttaacttgtgcctttgaggcataagttaagaaaccaaatgt 21620768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 26051200 - 26051249
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||| |||||||||||||| |||||| ||||||||||||||| ||||||    
T  26051200 agggagatgttaacttgtgctcttgggacataagttaagaaactaaatgt 26051249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 15080088 - 15080130
Alignment:
Q  189 aaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  15080088 aaatgttaacttgtgccctt-gggcataagttaaaaaaccaaat 15080130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 11563421 - 11563467
Alignment:
Q  188 gaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    |||||| ||||||||||||||||| ||||||||||||| | ||||||    
T  11563421 gaaatgctaacttgtgcccttgggacataagttaagaagctaaatgt 11563467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 4860627 - 4860579
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||||||||||||||||||  |||||||||||||||  |||||||    
T  4860627 agggaaatgttaacttgtgccctt-aggcataagttaagaagacaaatgt 4860579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 31596951 - 31596996
Alignment:
Q  187 ggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    ||||||| ||||||||||||||| |||||| ||||||||| |||||    
T  31596951 ggaaatgctaacttgtgcccttgaggcatatgttaagaaatcaaat 31596996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 32227431 - 32227471
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    |||||||||||||| ||||||||| ||||||| ||||||||    
T  32227431 agggaaatgttaacatgtgcccttagggcatatgttaagaa 32227471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 50170634 - 50170585
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50170634 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 50170585  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 37662918 - 37662958
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37662918 agggaaatgttaacttgtgcccttggggcataagttaagaa 37662958  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 3382572 - 3382608
Alignment:
Q  186 gggaaatgttaacttgtgcccttggggcataagttaa 222  Q
    |||||||||||||||||||||||||||||||||||||    
T  3382572 gggaaatgttaacttgtgcccttggggcataagttaa 3382608  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 50129033 - 50129069
Alignment:
Q  191 atgttaacttgtgcccttggggcataagttaagaaac 227  Q
    |||||||||||||||||||||||||||||| ||||||    
T  50129033 atgttaacttgtgcccttggggcataagtttagaaac 50129069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 28451896 - 28451856
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  28451896 agggaaatgttaacttgtgcccttagggcacatgttaagaa 28451856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 50129207 - 50129171
Alignment:
Q  191 atgttaacttgtgcccttggggcataagttaagaaac 227  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50129207 atgttaacttgtgcccttagggcacaagttaagaaac 50129171  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 19234792 - 19234841
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19234792 agggaaatgttaacttgtgcccttgcggcataagttaagaaaccaaatgt 19234841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 25901942 - 25901896
Alignment:
Q  186 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  25901942 gggaaatgttaacttgtgcccttgggacataagttaagaaactaaat 25901896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 34967794 - 34967758
Alignment:
Q  191 atgttaacttgtgcccttggggcataagttaagaaac 227  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34967794 atgttaacttgtgcccttggggcacaagttaagaaac 34967758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 38081750 - 38081700
Alignment:
Q  186 gggaaatgttaacttgtgccctt--ggggcataagttaagaaaccaaatgt 234  Q
    |||||||| ||||||||||||||  ||||||||||||||||||| ||||||    
T  38081750 gggaaatgctaacttgtgcccttcgggggcataagttaagaaactaaatgt 38081700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 30058347 - 30058393
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaa 231  Q
    |||||||||||||||||||| |||| | ||||||||||| |||||||    
T  30058347 agggaaatgttaacttgtgctcttgagacataagttaaggaaccaaa 30058393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 36567501 - 36567456
Alignment:
Q  189 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||||||||||| || ||||| |||||||||||| ||||||    
T  36567501 aaatgttaacttgtgcctttagggcagaagttaagaaactaaatgt 36567456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 298195 - 298235
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  298195 agggaaatgttaacttgtgcccttagggcacatgttaagaa 298235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 3491591 - 3491551
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  3491591 agggaaatgttaacttgtgcccttagggcaaatgttaagaa 3491551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 14149442 - 14149482
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    |||||||| ||||||||||||||| ||||||||| ||||||    
T  14149442 agggaaatattaacttgtgcccttagggcataagataagaa 14149482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 52413997 - 52413957
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    ||||||||||||||||||||||||  |||| ||||||||||    
T  52413997 agggaaatgttaacttgtgcccttaaggcacaagttaagaa 52413957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 11753120 - 11753073
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11753120 agggaaatgttaacttgtgcccttgggacataagttaagaaaccaaat 11753073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 12622500 - 12622538
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaag 223  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  12622500 agggaaatgttaacttgtgcccttgaggcataagttaag 12622538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 5605238 - 5605287
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||||    
T  5605238 agggaaatgataatttgtgcctttggggcataagttaagaaatcaaatgt 5605287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 15528499 - 15528452
Alignment:
Q  187 ggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||||    
T  15528499 ggaaatgttaacttgtgttcttggggcataagttaaaaaactaaatgt 15528452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 52356014 - 52355968
Alignment:
Q  186 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  52356014 gggaaatgttaacttgtgcccttgaggcataagttaagaaaccaaat 52355968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 30666828 - 30666877
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  30666828 agggaaatgttaacttgtgcccttgaggcacaagttaagaaaccaaatgt 30666877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 22318094 - 22318142
Alignment:
Q  186 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    |||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  22318094 gggaaatgttaatttgtgctcttggggcataagttaaggaaccaaatgt 22318142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 51164683 - 51164636
Alignment:
Q  188 gaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgtg 235  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||    
T  51164683 gaaatgttaacttgtgcccttgaggcagaagttaagaaactaaatgtg 51164636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 10401643 - 10401598
Alignment:
Q  189 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||    
T  10401643 aaatgttaatttatgcccttgaggcataagttaagaaaccaaatgt 10401598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 46964012 - 46963964
Alignment:
Q  186 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    |||||||||||||||||||||||  |||| ||||| |||||||||||||    
T  46964012 gggaaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgt 46963964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 13435522 - 13435479
Alignment:
Q  189 aaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  13435522 aaatgataactcgtgcccttgggacataagttaagaaaccaaat 13435479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 45891757 - 45891808
Alignment:
Q  180 aaatgagggaaatgttaacttgtgcccttggggcataagttaagaaaccaaa 231  Q
    |||| |||||||||||||||||||| |||  |||| ||||||||||||||||    
T  45891757 aaataagggaaatgttaacttgtgctcttaaggcacaagttaagaaaccaaa 45891808  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 5817325 - 5817370
Alignment:
Q  189 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    |||||||||||||||||||||  |||||||||| ||| ||||||||    
T  5817325 aaatgttaacttgtgcccttgaagcataagttacgaacccaaatgt 5817370  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 25064237 - 25064192
Alignment:
Q  190 aatgttaacttgtgcccttggggcataagttaagaaaccaaatgtg 235  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||    
T  25064237 aatgttaacttgtgcccttgagacataagttaagaaagtaaatgtg 25064192  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 37861163 - 37861208
Alignment:
Q  189 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||||||||||||||  |||| ||||| |||||||||||||    
T  37861163 aaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgt 37861208  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 54933086 - 54933127
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaa 226  Q
    ||||||||||||||||||| | |||||| |||||||||||||    
T  54933086 agggaaatgttaacttgtgtcattggggtataagttaagaaa 54933127  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 22409508 - 22409468
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  22409508 agggaaatgttaacttgtgcccttagggcacatgttaagaa 22409468  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 32280468 - 32280428
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    ||||||||||||||||||||||||  | |||||||||||||    
T  32280468 agggaaatgttaacttgtgcccttaagacataagttaagaa 32280428  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 46393114 - 46393158
Alignment:
Q  178 taaaatgagggaaatgttaacttgtgcccttggggcataagttaa 222  Q
    |||||| ||||||||||||||||||| ||||  ||||||||||||    
T  46393114 taaaattagggaaatgttaacttgtgtccttaaggcataagttaa 46393158  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 53209998 - 53210042
Alignment:
Q  188 gaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    |||||||||||||||| |||||  |||||||||||| ||||||||    
T  53209998 gaaatgttaacttgtgtccttgaagcataagttaaggaaccaaat 53210042  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 8059901 - 8059946
Alignment:
Q  189 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  8059901 aaatgttaacttgtgcccttgaggcataagttaagaaaccaaatgt 8059946  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 30875630 - 30875677
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  30875630 agggaaatgttaacttgtgtctttgaggcataagttaagaaaccaaat 30875677  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 8753391 - 8753345
Alignment:
Q  188 gaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||||    
T  8753391 gaaatgttaacttgtgccctcgaggcataagttaagaaactaaatgt 8753345  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 40819467 - 40819427
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    ||||||||||||||||||  | |||||||||||||||||||    
T  40819467 agggaaatgttaacttgtatctttggggcataagttaagaa 40819427  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 6271436 - 6271389
Alignment:
Q  187 ggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  6271436 ggaaatgttaacttatgcccttggggcataagttaagaaagcaaatgt 6271389  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 43132063 - 43132016
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  43132063 agggaaatgctaacttgtgcccttggggcataagttaagaaatcaaat 43132016  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 31765507 - 31765469
Alignment:
Q  196 aacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  31765507 aacttgtgcctttggggcataagttaagaaaccaaatgt 31765469  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 40720365 - 40720404
Alignment:
Q  186 gggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  40720365 gggaaatgttaacttgtgcgcttggggcataaattaagaa 40720404  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 37828497 - 37828459
Alignment:
Q  190 aatgttaacttgtgcccttggggcataagttaagaaacc 228  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  37828497 aatgctaacttgtgcccttggggcatatgttaagaaacc 37828459  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 5505602 - 5505643
Alignment:
Q  191 atgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    |||||||||||||||||||  ||||||||||||||| |||||    
T  5505602 atgttaacttgtgcccttgaagcataagttaagaaatcaaat 5505643  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 41888980 - 41888943
Alignment:
Q  177 ataaaatgagggaaatgttaacttgtgcccttggggca 214  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  41888980 ataaaataagggaaatgttaacttgtgcccttagggca 41888943  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 18700101 - 18700065
Alignment:
Q  191 atgttaacttgtgcccttggggcataagttaagaaac 227  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  18700101 atgttaacttgtgccctaggggcacaagttaagaaac 18700065  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 30961706 - 30961666
Alignment:
Q  192 tgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    |||||||||||| ||||| |||||||||||||||| |||||    
T  30961706 tgttaacttgtgtccttgaggcataagttaagaaaacaaat 30961666  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 11991607 - 11991559
Alignment:
Q  186 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  11991607 gggaaatgttaacttgtgtccttggggcataaattaagaagccaaatgt 11991559  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 40113106 - 40113066
Alignment:
Q  185 agggaaatgttaacttgtgcccttggggcataagttaagaa 225  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  40113106 agggaaatgttaacttgtgcccttggagcataagttaagaa 40113066  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 523618 - 523671
Alignment:
Q  179 aaaatgagggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 232  Q
    ||||| ||||||||||||||||||||||||  |||| ||||| |||| ||||||    
T  523618 aaaataagggaaatgttaacttgtgcccttaaggcacaagtttagaagccaaat 523671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 28735446 - 28735399
Alignment:
Q  186 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 234  Q
    ||||||||||||||||||||||| ||| ||||||||||||  |||||||    
T  28735446 gggaaatgttaacttgtgccctt-gggtataagttaagaagacaaatgt 28735399  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 45977 - 45935
Alignment:
Q  189 aaatgttaacttgtgcccttggggcataagttaagaaaccaaa 231  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  45977 aaatgttaacctgtgcccttggggcataagttaaggaaccaaa 45935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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