View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18039_low_17 (Length: 236)
Name: NF18039_low_17
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18039_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20059809 - 20060027
Alignment:
| Q |
1 |
cattcgtcttcagcggtcacttcaccttcgtaagttctatgcttattttccacgtggcttgtcaacgttgaattagatgatccattgaaactaactacat |
100 |
Q |
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| T |
20059809 |
cattcgtcttcagcggtcacttcaccttcgtaagttctatgcttattttccacgtggcttgtcaacgttgaattagatgatccattgaaactaactacat |
20059908 |
T |
|
| Q |
101 |
tcatcttgtagaacgttttgtttgaagaggaaccttccttgtacaagaaaaccccagtgtgagtattgagcatatttttagtaaatcggttgtacatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |
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| T |
20059909 |
tcatcttgtagaacgttttgtttgaagaggaaccttccttgtacaagaaaaccccagtgtaagtgttgagcata--tttagtaaatcggttgtacatgat |
20060006 |
T |
|
| Q |
201 |
ccataatccataaaactgaac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
20060007 |
ccataatccataaaactgaac |
20060027 |
T |
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