View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18039_low_18 (Length: 233)

Name: NF18039_low_18

Description: NF18039

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18039_low_18

[»] chr7 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 160; E-Value: 2e-85

Query Start/End: Original strand, 16 - 215

Target Start/End: Original strand, 8533370 - 8533569

Alignment:

Q	16	aagaatcatattaaatgtctgaacattaggttccagaccattgttcttcatctggtcatacaatgttcgagcctctaaagttcttccacttctaagatgc	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8533370	aagaatcatattaaatgtctgaaaattaggttccagaccatttttcttcatctggtcatacaatgttctggcctctaaagttcttccacttctaagatgt	8533469	T

Q	116	gcatcgatgccaacaccatatgctaaactgtcaagaggatatttcttaagtgcttcggatataaaaacatcagaagcctgttgataatgaccagtctttt	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|
T	8533470	gcatcgatgccaacaccatatgctatactgtcaagaggatatttcttaactgcttcggatataaaaacatcagaagcctgttcatactgaccagcctttt	8533569	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 96; E-Value: 3e-47

Query Start/End: Original strand, 16 - 115

Target Start/End: Original strand, 975002 - 975101

Alignment:

Q	16	aagaatcatattaaatgtctgaacattaggttccagaccattgttcttcatctggtcatacaatgttcgagcctctaaagttcttccacttctaagatgc	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	975002	aagaatcatattaaatgtctgaacattaggttccagaccattgttcttcatctggtcatacaatgttcgggcctctaaagttcttccacttctaagatgc	975101	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]