View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18039_low_3 (Length: 519)
Name: NF18039_low_3
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18039_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 501
Target Start/End: Complemental strand, 8470043 - 8469557
Alignment:
| Q |
15 |
agtattgtaatggatagtccgattccgattctttgtagctcgctaggaagttttggatctcttttgatgatttttacgtacaatggaacaatgagaatgt |
114 |
Q |
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| T |
8470043 |
agtattgtaatggatagtccgattccaattctttgtagttcgctaggaagtttcggatctcttttgatgactttcacgtataatggaacgatgagaatgt |
8469944 |
T |
|
| Q |
115 |
cgaataacatgatgaatgctgatgtgctaatgatgtcgaatgctgtcatgcttgcaggagggacttcaaacttgtaaaattttctgttcatcgttgaacc |
214 |
Q |
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| T |
8469943 |
cgaataacatgatgaatgctgatgtgctaatgatgtcgaatgctgtcatgcttgcaggagggatttcaaacttgtaaaattttctgttcattgttgagcc |
8469844 |
T |
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| Q |
215 |
ttgctcgacgaatagagaaagcatttgtatgaagacgacagaggagaagatggtgcataaccgaaccggcaatagtcccaaaatacatttcacttcttca |
314 |
Q |
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| T |
8469843 |
ttgctcgacgaatagagaaagcatttgtatgaagacgacggaggagaagatggtgcataaccaaactggcaatagtctcaaaatacatttcacttcttca |
8469744 |
T |
|
| Q |
315 |
acttgtgtcacagtgcagagtttccaaggatttgga-ttttcggctttctctagcaatttgttcttctctttagtagaaataatagcagctctatcaaga |
413 |
Q |
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| T |
8469743 |
acttgtgtcacagtgcagagtttccaaggatttggatttttcagctttctctagcaattggttcttttctttagtagaaataatagctgctctatcaaga |
8469644 |
T |
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| Q |
414 |
aacctgtttgtcaccaagaaaaatgaatnnnnnnnnntatgaatacaacattgaaaacgttttgttgaagtcatttcctgtttggata |
501 |
Q |
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| T |
8469643 |
aacctgtttgtcaccagcaaaaatgaa-acaaaaaaatatgaatacaatattgaaaactctttgttgaagtcatttcatgtttggata |
8469557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 8126485 - 8126739
Alignment:
| Q |
17 |
tattgtaatggatagtccgattccgattctttgtagctcgctaggaagttttggatctcttttgatgatttttacgtacaatggaacaatgagaatgtcg |
116 |
Q |
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|||||||||| | |||||||| || || ||||||||||| || |||||||||||| |||||| || | ||| | ||| ||||||| ||| |||| |||| |
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| T |
8126485 |
tattgtaatgcagagtccgatgccaatactttgtagctcacttggaagttttggaggtcttttcatcactttaatgtataatggaataataagaacgtcg |
8126584 |
T |
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| Q |
117 |
aataacatgatgaatgctgatgtgctaatgatgtcgaatgctgtcatgcttgcaggagggacttcaaacttgtaaaattttctgttcatcgttgaacctt |
216 |
Q |
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| T |
8126585 |
agtaatatgataaatgttgatgtgcttatgatatcaaatgctgtcatgcttgaaggagggatctgaaacttgaaaaatgttctgtccattgtagaacctt |
8126684 |
T |
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| Q |
217 |
gctcgacgaatagagaaagcatttgtatgaagacgacagaggagaagatggtgca |
271 |
Q |
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| T |
8126685 |
gctcaacaaatagagaaagcaattgtatgaaaacactagaggagaagattgtgca |
8126739 |
T |
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