View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18039_low_8 (Length: 404)
Name: NF18039_low_8
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18039_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 155 - 380
Target Start/End: Original strand, 9629429 - 9629654
Alignment:
| Q |
155 |
ttcactgattcttgatcttgtctctagatggtaataacctatcttaataaaatgtttgctggatttgttgagcaagttcttcagcactgagttggcattc |
254 |
Q |
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| T |
9629429 |
ttcattgattcttgatcttgtctctagatggtaataacctttcttaataaaatgtttgctggatttgttgagcaagttcttcagcactgagttggcattc |
9629528 |
T |
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| Q |
255 |
aattccaatctacataagagaaattttaagaaaatataattaattattaatggaccgaaattgaaaacataaataacattaacacacatgatacatgcat |
354 |
Q |
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| T |
9629529 |
aattccaatctacataagagaaattttaagaaaatataattaattattaatggaccaaaattgaaaacataaataacattaacacacatgatacatgcat |
9629628 |
T |
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| Q |
355 |
actcaatcattagctgctatgaatta |
380 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9629629 |
actcaatcattagctgctatgaatta |
9629654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 15807356 - 15807481
Alignment:
| Q |
25 |
gcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcat |
124 |
Q |
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| T |
15807356 |
gcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcat |
15807455 |
T |
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| Q |
125 |
gctattctcagctttcacaggttctg |
150 |
Q |
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| T |
15807456 |
gctattctcagctttcccaagttctg |
15807481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 15801737 - 15801862
Alignment:
| Q |
25 |
gcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcat |
124 |
Q |
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| T |
15801737 |
gcaccaaaccataccttttctcggtgtcactccaaatgaactcacccgttgcccaaacgggactggattctgtagtcactttgcgtatcaaactcatcat |
15801836 |
T |
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| Q |
125 |
gctattctcagctttcacaggttctg |
150 |
Q |
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| T |
15801837 |
gttattctcagctttcccaagttctg |
15801862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 15793946 - 15794063
Alignment:
| Q |
33 |
ccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcatgctattct |
132 |
Q |
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| T |
15793946 |
ccataccttttctcagtgtcactccaattgaactcacccattgcccaattgggattgccttctgtcgtcacttttcgtatcaaactcatcatgttattct |
15794045 |
T |
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| Q |
133 |
cagctttcacaggttctg |
150 |
Q |
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| T |
15794046 |
cagatttcgcaagttctg |
15794063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 41258637 - 41258571
Alignment:
| Q |
205 |
aatgtttgctggatttgttgagcaagttcttcagcactgagttggcattcaattccaatctacataa |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
41258637 |
aatgtttgctggatttgttgagcaagttcttcagcactcagttggcattcaattccaatctatataa |
41258571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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