View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18039_low_9 (Length: 372)
Name: NF18039_low_9
Description: NF18039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18039_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 43725226 - 43725571
Alignment:
| Q |
10 |
ataatactcatcatcaacacaagaactactatagcctagaactaaatgcttcgttgaacccaggcataaccacaggaaccagcaatttcttagtacaaat |
109 |
Q |
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| T |
43725226 |
ataatactcatcatcaacacaagaactactatagcttagacctaaatgcttcgttgaacccaggcataaccacaggaaccagcaatttcttagtacaaat |
43725325 |
T |
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| Q |
110 |
aggagttggaggaccaccacaaaaattctacatgattttcgacctccaaaccgatttcacctggcttcaatgccaaccatgtatcaaatgttacgatcaa |
209 |
Q |
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| T |
43725326 |
cggagttggaggaccaccacaaaaattctacatgattttcgacctccaaaccgatttcacttggcttcaatgccaaccatgtatcaaatgttacgatcaa |
43725425 |
T |
|
| Q |
210 |
cctgattccattttcgacccatcacagtcctcttcatacaccctactttcctgcgaaaccaaacactgtaacttacttccaaattcttcttgtagcgatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43725426 |
cctgattccattttcgacccatcacagtcctcttcatacaccctactttcctgcgaaaccaaacactgtaacttacttccaaattcttcttgtagcgatg |
43725525 |
T |
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| Q |
310 |
atggttattgtagatacaatattacctacaaagacggtacaaatac |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43725526 |
atggttattgtagatacaatattacctacaaagacggtacaaatac |
43725571 |
T |
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