View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1803_high_12 (Length: 301)

Name: NF1803_high_12
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1803_high_12
NF1803_high_12
[»] chr4 (13 HSPs)
chr4 (84-284)||(49385354-49385553)
chr4 (1-46)||(56088096-56088141)
chr4 (1-40)||(13276128-13276167)
chr4 (1-40)||(29908055-29908094)
chr4 (1-40)||(29910460-29910499)
chr4 (1-40)||(44221446-44221485)
chr4 (1-40)||(51465336-51465375)
chr4 (1-40)||(56497631-56497670)
chr4 (1-39)||(19908692-19908730)
chr4 (1-47)||(56309323-56309369)
chr4 (1-38)||(8415518-8415555)
chr4 (1-38)||(27537749-27537786)
chr4 (1-38)||(45029628-45029665)
[»] scaffold0533 (1 HSPs)
scaffold0533 (1-40)||(8874-8913)
[»] chr5 (10 HSPs)
chr5 (1-40)||(39914900-39914939)
chr5 (1-40)||(3955545-3955584)
chr5 (1-40)||(13906707-13906746)
chr5 (1-40)||(34702489-34702528)
chr5 (1-40)||(42515806-42515845)
chr5 (1-39)||(22498942-22498980)
chr5 (1-39)||(40056613-40056651)
chr5 (1-38)||(16752525-16752562)
chr5 (7-40)||(36822344-36822377)
chr5 (1-38)||(43108570-43108607)
[»] chr1 (16 HSPs)
chr1 (1-40)||(45481492-45481531)
chr1 (1-40)||(9639840-9639879)
chr1 (1-40)||(18521246-18521285)
chr1 (1-36)||(26525559-26525594)
chr1 (1-40)||(30003200-30003239)
chr1 (1-44)||(47719130-47719173)
chr1 (1-40)||(49875622-49875661)
chr1 (1-39)||(28039883-28039921)
chr1 (1-39)||(36467048-36467086)
chr1 (1-39)||(45224302-45224340)
chr1 (1-46)||(15803260-15803305)
chr1 (3-40)||(28053266-28053303)
chr1 (2-42)||(10489800-10489840)
chr1 (1-49)||(16580822-16580870)
chr1 (1-45)||(18398632-18398676)
chr1 (1-49)||(30678836-30678884)
[»] scaffold0238 (1 HSPs)
scaffold0238 (1-46)||(25382-25427)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-42)||(34911-34952)
[»] chr8 (8 HSPs)
chr8 (1-46)||(10601756-10601801)
chr8 (1-40)||(9241014-9241053)
chr8 (5-44)||(34420889-34420928)
chr8 (1-39)||(56827-56865)
chr8 (1-47)||(17704005-17704051)
chr8 (1-38)||(7968963-7969000)
chr8 (1-38)||(35889664-35889701)
chr8 (1-37)||(8442510-8442546)
[»] chr3 (8 HSPs)
chr3 (1-38)||(5135082-5135119)
chr3 (1-40)||(17588361-17588400)
chr3 (1-40)||(26973360-26973399)
chr3 (1-40)||(28130957-28130996)
chr3 (1-40)||(47377372-47377411)
chr3 (1-38)||(7961755-7961792)
chr3 (5-50)||(8127452-8127497)
chr3 (1-38)||(21914094-21914131)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-40)||(15953-15992)
[»] chr7 (7 HSPs)
chr7 (1-40)||(22062436-22062475)
chr7 (1-40)||(28012637-28012676)
chr7 (2-40)||(20103478-20103516)
chr7 (1-42)||(1398420-1398461)
chr7 (1-38)||(28735255-28735292)
chr7 (1-37)||(10461787-10461823)
chr7 (4-44)||(27159694-27159734)
[»] chr6 (6 HSPs)
chr6 (1-40)||(7083015-7083054)
chr6 (1-40)||(8629719-8629758)
chr6 (1-40)||(11713665-11713704)
chr6 (1-40)||(32524443-32524482)
chr6 (1-45)||(1874980-1875024)
chr6 (1-45)||(2213291-2213335)
[»] chr2 (16 HSPs)
chr2 (1-40)||(2429015-2429054)
chr2 (1-44)||(2434933-2434976)
chr2 (1-40)||(2661071-2661110)
chr2 (1-40)||(7640657-7640696)
chr2 (1-40)||(8387908-8387947)
chr2 (1-40)||(15770789-15770828)
chr2 (1-52)||(31815910-31815961)
chr2 (1-40)||(32091194-32091233)
chr2 (1-44)||(37320540-37320583)
chr2 (1-39)||(4897543-4897581)
chr2 (1-39)||(4944937-4944975)
chr2 (1-39)||(18324917-18324955)
chr2 (1-39)||(36264502-36264540)
chr2 (1-38)||(26133543-26133580)
chr2 (1-37)||(7772483-7772519)
chr2 (1-33)||(12353662-12353694)
[»] scaffold0027 (1 HSPs)
scaffold0027 (4-44)||(61596-61636)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 84 - 284
Target Start/End: Original strand, 49385354 - 49385553
Alignment:
Q  84 taattttaaagactaaaatatgatctagtagccnnnnnnnntgtccttttccttctctccatgataagtcactgtctttaaaagacccctcaaaaaccaa 183  Q
    |||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49385354 taattttaaagactaaaatatgatctagtagccaaagaaaatgtctttttccttctctccatgataagtcactgtctttaaaagacccctcaaaaaccaa 49385453  T
Q  184 acttcttccattctccatccatcatcataagtcataacataaccattcttaccttctgcagcctcattattcaatccatattttctttgccattttctca 283  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49385454 acttcttc-attctccatccatcatcacaagtcataacataaccattcttaccttctgcagcctcattattcaatccatattttctttgccattttctca 49385552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 56088096 - 56088141
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggata 46  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||    
T  56088096 tatattatgtattgtccttaccaattgagctaagctcacgtggata 56088141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13276167 - 13276128
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  13276167 tatattatgcattgtccctaccaattgagttaagctcacg 13276128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29908094 - 29908055
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  29908094 tatattatgcattgtccttaccaactgagttaagctcacg 29908055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29910499 - 29910460
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  29910499 tatattatgcattgtccttatcaattgagttaagctcacg 29910460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44221485 - 44221446
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  44221485 tatattatgcattgtccataccaactgaattaagctcacg 44221446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51465375 - 51465336
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  51465375 tatattatgcattgtccataccaactgaattaagctcacg 51465336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 56497631 - 56497670
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  56497631 tatattatgcattgtccttaccaattgagctaagctcacg 56497670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19908730 - 19908692
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  19908730 tatattatgcattgtccttaccaactgagttaagctcac 19908692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 56309323 - 56309369
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggatat 47  Q
    ||||||||||||||||| || ||||||| ||||||||||| ||||||    
T  56309323 tatattatgcattgtccatatcaattgagttaagctcacgaggatat 56309369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8415518 - 8415555
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  8415518 tatattatgcattgtccataccaactgaattaagctca 8415555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27537786 - 27537749
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  27537786 tatattatgcattgtccataccaattgagttaagctca 27537749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45029628 - 45029665
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  45029628 tatattatgcattgtccttaccaaatgagttaagctca 45029665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8874 - 8913
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  8874 tatattatgcattgtccttaccaattgagttaagctcacg 8913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39914939 - 39914900
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  39914939 tatattatgcattgtccttaccaattgagttaagctcacg 39914900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3955584 - 3955545
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  3955584 tatattatgcattgtctttaccaattgaactaagctcacg 3955545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13906707 - 13906746
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  13906707 tatattatgcattgtccttaccaactgagttaagctcacg 13906746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34702528 - 34702489
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  34702528 tatattatgcattgtccttaccaactgagttaagctcacg 34702489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42515845 - 42515806
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  42515845 tatattatgcattgtccataccaactgaattaagctcacg 42515806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22498980 - 22498942
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  22498980 tatattatgcattgtccttaccaactgagttaagctcac 22498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40056613 - 40056651
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  40056613 tatattatgcattgtccttaccaactgagttaagctcac 40056651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16752525 - 16752562
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  16752525 tatattatgcattgtccttaccaactgaactaagctca 16752562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 36822344 - 36822377
Alignment:
Q  7 atgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||| |||||||||||    
T  36822344 atgcattgtccttaccaattgagttaagctcacg 36822377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43108607 - 43108570
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  43108607 tatattatgcattgtccttaccaactgagttaagctca 43108570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45481531 - 45481492
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  45481531 tatattatgcattgtccttaccaaatgaattaagctcacg 45481492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9639840 - 9639879
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  9639840 tatattatgcattgtccttaccaagtgagttaagctcacg 9639879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18521285 - 18521246
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  18521285 tatattatgcattgtccttaccaattgagttaagttcacg 18521246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26525559 - 26525594
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagct 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26525559 tatattatgtattgtccttaccaattgaattaagct 26525594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30003239 - 30003200
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  30003239 tatattatgcattgtccataccaactgaattaagctcacg 30003200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47719130 - 47719173
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtgga 44  Q
    ||||||||||||| |||||||||| ||| |||||||||||||||    
T  47719130 tatattatgcattatccttaccaactgagttaagctcacgtgga 47719173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 49875622 - 49875661
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  49875622 tatattatgcattgtccttaccaactgagttaagctcacg 49875661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28039883 - 28039921
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  28039883 tatattatgcattgtccttaccaactgagttaagctcac 28039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36467048 - 36467086
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  36467048 tatattatgcattgtccatatcaattgaattaagctcac 36467086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 45224302 - 45224340
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  45224302 tatattatgaattgtccttaccaattgagttaagctcac 45224340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15803260 - 15803305
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggata 46  Q
    ||||||||||||||||||| |||| |||| |||||||||| |||||    
T  15803260 tatattatgcattgtccttgccaactgaactaagctcacggggata 15803305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 28053266 - 28053303
Alignment:
Q  3 tattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  28053266 tattatgcattgtccataccaactgaattaagctcacg 28053303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 10489840 - 10489800
Alignment:
Q  2 atattatgcattgtccttaccaattgaattaagctcacgtg 42  Q
    |||||||||||| |||||||||| ||||||||| |||||||    
T  10489840 atattatgcattatccttaccaactgaattaagttcacgtg 10489800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16580822 - 16580870
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggatataa 49  Q
    |||||||| |||||||| |||||| ||||||||||||||| ||| ||||    
T  16580822 tatattatacattgtccataccaactgaattaagctcacggggacataa 16580870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18398676 - 18398632
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggat 45  Q
    ||||||||| |||||||||||||| |||||||| |||||| ||||    
T  18398676 tatattatgtattgtccttaccaactgaattaaactcacgaggat 18398632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30678836 - 30678884
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggatataa 49  Q
    ||||||||||||||||| |||||| ||| ||||||||||| ||| ||||    
T  30678836 tatattatgcattgtccctaccaactgagttaagctcacgaggacataa 30678884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25427 - 25382
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggata 46  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||    
T  25427 tatattatgcattgtccttaccaactgagttaagctcacggggata 25382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34911 - 34952
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtg 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  34911 tatattatgcattgtccttaccaactgagttaagctcacgtg 34952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10601801 - 10601756
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggata 46  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||    
T  10601801 tatattatgcattgtccataccaactgaattaagctcacgcggata 10601756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9241053 - 9241014
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  9241053 tatattatgcattgtacttaccaattgatttaagctcacg 9241014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 34420889 - 34420928
Alignment:
Q  5 ttatgcattgtccttaccaattgaattaagctcacgtgga 44  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  34420889 ttatgcattgtccataccaattgagttaagctcacgtgga 34420928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 56827 - 56865
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  56827 tatattatgcattgtccataccaattgagttaagctcac 56865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17704051 - 17704005
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggatat 47  Q
    |||||||||||||||||||||||| |||  |||||||||| ||||||    
T  17704051 tatattatgcattgtccttaccaactgagctaagctcacgaggatat 17704005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7968963 - 7969000
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  7968963 tatattatgcattgtccttaccaactgaattaaactca 7969000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35889701 - 35889664
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  35889701 tatattatgcattgtccgtaccaattgaattatgctca 35889664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8442510 - 8442546
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctc 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  8442510 tatattatgcattgtccttaccaactgagttaagctc 8442546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5135119 - 5135082
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  5135119 tatattatgcattgtccttaccaactgaattaagctca 5135082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17588400 - 17588361
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  17588400 tatattatgcattgtccttaccaactgagttaagctcacg 17588361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26973399 - 26973360
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  26973399 tatattatgcattgtccttaccaatttaattaagttcacg 26973360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28130957 - 28130996
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  28130957 tatattatgcattgtccttaccatttgaactaagctcacg 28130996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47377372 - 47377411
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  47377372 tatattatgcattgtccttaccaactgagttaagctcacg 47377411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7961755 - 7961792
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  7961755 tatattatacattgtccttaccaactgaattaagctca 7961792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 8127497 - 8127452
Alignment:
Q  5 ttatgcattgtccttaccaattgaattaagctcacgtggatataat 50  Q
    |||||||||||||||||||| ||| ||||||||||| ||| |||||    
T  8127497 ttatgcattgtccttaccaactgagttaagctcacgaggacataat 8127452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21914094 - 21914131
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  21914094 tatattatgcattgtccttaccaactgagttaagctca 21914131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15953 - 15992
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  15953 tatattatacattgtccttaccaattgagttaagctcacg 15992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22062436 - 22062475
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  22062436 tatattatgtattgtccttaccaattgagttaagctcacg 22062475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28012637 - 28012676
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  28012637 tatattatgcattgtccttaccaactgagttaagctcacg 28012676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 20103478 - 20103516
Alignment:
Q  2 atattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  20103478 atattatgcattgtccttaccaactgagttaagctcacg 20103516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1398420 - 1398461
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtg 42  Q
    |||||||||||||||||||||||| |||  ||||||||||||    
T  1398420 tatattatgcattgtccttaccaactgagctaagctcacgtg 1398461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28735255 - 28735292
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  28735255 tatattatgcattgtccttaccaactgaattatgctca 28735292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10461787 - 10461823
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctc 37  Q
    |||||||||||||||||||| |||||||| |||||||    
T  10461787 tatattatgcattgtccttatcaattgaactaagctc 10461823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 27159734 - 27159694
Alignment:
Q  4 attatgcattgtccttaccaattgaattaagctcacgtgga 44  Q
    |||||||| ||||| ||||||||||| ||||||||||||||    
T  27159734 attatgcaatgtccctaccaattgaactaagctcacgtgga 27159694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7083015 - 7083054
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  7083015 tatattatgcattgtccttaccaattgagctaagctcacg 7083054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8629719 - 8629758
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  8629719 tatattatgcattgtccataccaattgagttaagctcacg 8629758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11713704 - 11713665
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  11713704 tatattatgcattatccttaccaattgatttaagctcacg 11713665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32524443 - 32524482
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  32524443 tatattatgcattgtccctaccaattgagttaagctcacg 32524482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1874980 - 1875024
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggat 45  Q
    ||||||||||||  ||||||||||||||  |||||||||||||||    
T  1874980 tatattatgcatcatccttaccaattgagctaagctcacgtggat 1875024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2213335 - 2213291
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggat 45  Q
    ||||||||||||||| |||||||||||| ||||| ||||| ||||    
T  2213335 tatattatgcattgttcttaccaattgagttaagttcacgaggat 2213291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2429054 - 2429015
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  2429054 tatattatgcattgtccttaccaactgaactaagctcacg 2429015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2434933 - 2434976
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtgga 44  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||    
T  2434933 tatattatgcattgtccttcccaactgaactaagctcacgtgga 2434976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2661071 - 2661110
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  2661071 tatattatgcattgtccttaccaactgagttaagctcacg 2661110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7640696 - 7640657
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  7640696 tatattatgtattgtccttaccaattgagttaagctcacg 7640657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8387908 - 8387947
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  8387908 tatattatgcattgtccttaccaattgagttaaactcacg 8387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15770828 - 15770789
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  15770828 tatattatgcattgtccataccaattgaactaagctcacg 15770789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31815910 - 31815961
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtggatataattt 52  Q
    ||||||||||||||||| |||||| ||| ||||||||||| | |||||||||    
T  31815910 tatattatgcattgtccctaccaactgagttaagctcacgagaatataattt 31815961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32091194 - 32091233
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacg 40  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  32091194 tatattatgcattttccttaccaattgagttaagctcacg 32091233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37320540 - 37320583
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcacgtgga 44  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||    
T  37320540 tatattatgcattgtctttaccaactgagttaagctcacgtgga 37320583  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4897581 - 4897543
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  4897581 tatattatgcattgtccttaccaactgagttaagctcac 4897543  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4944975 - 4944937
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  4944975 tatattatgcattgtccttaccaactgagttaagctcac 4944937  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18324917 - 18324955
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  18324917 tatattatgcattgtccttaccaactgagttaagctcac 18324955  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36264502 - 36264540
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctcac 39  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  36264502 tatattatgcattatccataccaattgaattaagctcac 36264540  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26133543 - 26133580
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctca 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  26133543 tatattatgcattgtccttaccaactgagttaagctca 26133580  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7772483 - 7772519
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaagctc 37  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  7772483 tatattatgcattatccttaccaattgagttaagctc 7772519  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12353694 - 12353662
Alignment:
Q  1 tatattatgcattgtccttaccaattgaattaa 33  Q
    |||||||||||||||||||||||||||| ||||    
T  12353694 tatattatgcattgtccttaccaattgagttaa 12353662  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 61596 - 61636
Alignment:
Q  4 attatgcattgtccttaccaattgaattaagctcacgtgga 44  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  61596 attatgcattatccttaccaactgagttaagctcacgtgga 61636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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