View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_high_20 (Length: 237)
Name: NF1803_high_20
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 35451092 - 35450885
Alignment:
| Q |
1 |
aatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaattcttaacgcgacctcgagcgttatttaaaacctatttcat |
100 |
Q |
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| T |
35451092 |
aatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaattcttaacgcgacctcgagcgttatttaaaacctatttcat |
35450993 |
T |
|
| Q |
101 |
taaggtgtactgatttatttagtattttgataaaaatgaaaaatttgtatggatttagcaattggtatgatgattaggctataagtcgttagctttaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35450992 |
taaggtgtactgatttatttagtattttgataaaaatgaaaaatttgtatggatttagcaattggtatgatgattaggctataagtcgttagctttaact |
35450893 |
T |
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| Q |
201 |
gtttggga |
208 |
Q |
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|||||||| |
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| T |
35450892 |
gtttggga |
35450885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25635929 - 25635870
Alignment:
| Q |
1 |
aatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaat |
60 |
Q |
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| T |
25635929 |
aatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaatcgcaaaat |
25635870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13402226 - 13402318
Alignment:
| Q |
1 |
aatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaatcacaaaattctta-acgcgacctcgagcgttatttaaaacct |
93 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||| | |||||||| ||| ||||| |||||||| ||| |||||||| |||||| |
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| T |
13402226 |
aatgttgtgattaattcacaccgcgacaaccgcaatccgtaacagctgaaatcacgaaa-tcttatacgcgaccacgaccgttatttgaaacct |
13402318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 23489995 - 23489967
Alignment:
| Q |
1 |
aatgttgtgattaattcacaccgcaacaa |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23489995 |
aatgttgtgattaattcacaccgcaacaa |
23489967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9457758 - 9457798
Alignment:
| Q |
1 |
aatgttgtgattaattcacaccgcaacaatggcaatccgta |
41 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
9457758 |
aatgttgtgattaattcacaccgcaacaaccgcaatccgta |
9457798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9461855 - 9461895
Alignment:
| Q |
1 |
aatgttgtgattaattcacaccgcaacaatggcaatccgta |
41 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
9461855 |
aatgttgtgattaattcacaccgcaacaaccgcaatccgta |
9461895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25968143 - 25968183
Alignment:
| Q |
1 |
aatgttgtgattaattcacaccgcaacaatggcaatccgta |
41 |
Q |
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|||||||||||||||||||||||| |||| |||||||||| |
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| T |
25968143 |
aatgttgtgattaattcacaccgcgacaaccgcaatccgta |
25968183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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