View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_high_29 (Length: 204)
Name: NF1803_high_29
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 53089063 - 53089251
Alignment:
| Q |
14 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat-----------------catggaacttcttggctagttccctttttcc |
96 |
Q |
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| T |
53089063 |
attattctggtaatgtgatgcatatagcatacttatactcgctaaaattcatacaaactcgtcactcatcatggaacttcttggctagttccctttttcc |
53089162 |
T |
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| Q |
97 |
ttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttga |
185 |
Q |
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| T |
53089163 |
ttgaaaaaatacctcctataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttga |
53089251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 14333826 - 14333954
Alignment:
| Q |
60 |
attcatcatggaacttcttggctagttccctttttccttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
159 |
Q |
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| T |
14333826 |
attcatcatggaacttcttggttagttccctttttcctagaaaatatgcctccaataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
14333925 |
T |
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| Q |
160 |
gcctttccaacttctcaacaccttgatga |
188 |
Q |
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| T |
14333926 |
gcctttccaacttctcaacaccttgatga |
14333954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 14333763 - 14333814
Alignment:
| Q |
14 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat |
65 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14333763 |
attaatctggtaatgtaatgcatgaagcatacttatactcgctaaaattcat |
14333814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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