View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_high_3 (Length: 447)
Name: NF1803_high_3
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 41948802 - 41949232
Alignment:
| Q |
1 |
gtaataattccactgaataaaacttgttggcgatgctttttcataatatccttgcctccttcatcccctttattctaatttcaagaatgtcattatatct |
100 |
Q |
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| T |
41948802 |
gtaataattccactgaataaaacttgttggcgatgctttttcataatatccttgcctccttcatcccctttattctaatttcaagaatgtcattatatct |
41948901 |
T |
|
| Q |
101 |
atcaaaaatctatatttatggaataccacaatgcaagtgcaacaatacagaggtaataatagtcatttgtaagagacaaattcattaaaacctttttagt |
200 |
Q |
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| T |
41948902 |
atcaaaaatctatatttatggaataccacaatgcaagtgcaacaatacagaggtaataatagtcatttgtaagagacaaattcattaaaacctttttagt |
41949001 |
T |
|
| Q |
201 |
cttgacatctgcagtgggagtaagcgttggctccgggataaaactgactacagcagcaaagaatataacaccagcaaaaaactacaaaaatgagaagata |
300 |
Q |
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| T |
41949002 |
cttgacatctgcagtgggagtaagcgttggctccgggataaaactgactacagcagcaaagaatataacaccagcaaaaaactacaaaaatgagaagata |
41949101 |
T |
|
| Q |
301 |
aaagattttagtcagaactaacactttatgattagctcaaatgcaacaacgtacccaaaggttgcctttcaagaagcccagtgagtttatagcattatga |
400 |
Q |
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| T |
41949102 |
aaagattttagtcagaactaacactttatgattagctcaaatgcaacaacgtacccaaaggttgcctttcaagaagcccagtgagtttatagcattatga |
41949201 |
T |
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| Q |
401 |
gccagatcaaagaatgatatgctcagcatca |
431 |
Q |
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| T |
41949202 |
gccagatcaaagaatgatatgctcagcatca |
41949232 |
T |
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Back To:
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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 24515436 - 24515513
Alignment:
| Q |
352 |
tacccaaaggttgcctttcaagaagcccagtgagtttatagcattatgagccagatcaaagaatgatatgctcagcat |
429 |
Q |
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| T |
24515436 |
tacccaaaggttgcctctgaggaagcctagtgtgtttatggcattatgagcaagatcaaaaaatgatatgctcagcat |
24515513 |
T |
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