View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1803_high_5 (Length: 426)
Name: NF1803_high_5
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1803_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 41267702 - 41267474
Alignment:
| Q |
3 |
atcataggcttttacctcttaaatttctatcttcatttaaggactacaggcatctttgtcttaccactgaaagcaatagccggattaaccttatttgctt |
102 |
Q |
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| T |
41267702 |
atcataggcttgtacctcttaaatttctatcttcatttaaggactacaggtatctttgtctgaccactgaaagcaatagccggattaaccttatttgctt |
41267603 |
T |
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| Q |
103 |
aagtttttaccatatcattcacctttacagtgtgtcaattgctccaggttcatattaaatgtcaatgtcttttaaagtaatacgtgcattttaagaaaac |
202 |
Q |
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| T |
41267602 |
aagtttttaccatatcattcaccttttcagtgtgtcatttgctccaggttcatattaaatgtcaatgtcttttaaagtaatacgtgcattttaagaaaac |
41267503 |
T |
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| Q |
203 |
gatcttttgctgattacatgtgtatttta |
231 |
Q |
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| T |
41267502 |
gatcttttactgattacatgtgtatttta |
41267474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 230 - 383
Target Start/End: Complemental strand, 41267419 - 41267266
Alignment:
| Q |
230 |
taagatcaaaagaacctccatttgtaatgttttaagattacgacgagacaaagcaacttcaattacgccgtattattctatcataaattatatttcgatt |
329 |
Q |
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| T |
41267419 |
taagatcaaaagaacctccatttgtaatgttttaacattacgacgagacaaagcaacttcaattacgccgtagtattctatcataaattatatttcgatt |
41267320 |
T |
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| Q |
330 |
caaatcattaattctaaatatgcgtgtgaaagaaggggttgaaagttgacaaag |
383 |
Q |
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| T |
41267319 |
taaatcattaattctaaatatgcgtataaaagaagggattggaagttgacaaag |
41267266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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