View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1803_high_6 (Length: 390)

Name: NF1803_high_6
Description: NF1803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1803_high_6
NF1803_high_6
[»] chr2 (4 HSPs)
chr2 (134-374)||(28786134-28786374)
chr2 (174-374)||(28736619-28736819)
chr2 (174-374)||(28743245-28743445)
chr2 (174-374)||(28713345-28713545)
[»] chr8 (11 HSPs)
chr8 (1-228)||(2028440-2028667)
chr8 (110-228)||(1950435-1950553)
chr8 (112-228)||(10767615-10767731)
chr8 (108-225)||(2032979-2033099)
chr8 (108-225)||(2050220-2050337)
chr8 (113-228)||(2046408-2046526)
chr8 (128-228)||(2057180-2057280)
chr8 (113-228)||(2037031-2037149)
chr8 (108-228)||(2054223-2054346)
chr8 (194-374)||(2022147-2022327)
chr8 (9-76)||(1950343-1950410)
[»] chr4 (1 HSPs)
chr4 (108-197)||(48908694-48908783)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 134 - 374
Target Start/End: Original strand, 28786134 - 28786374
Alignment:
Q  134 tcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgtatgaaa 233  Q
    ||||||||||| |||| || |||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28786134 tcttgtggtttaggagcattaggagccaaggaacacacaaaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgtatgaaa 28786233  T
Q  234 atggcctcattggatcacgagaatataactcttttttcacttcaacatcttgttcaaagaatctaatcactccatttctcatatcctcaagaacattcaa 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28786234 atggcctcattggatcacgagaatataactcttttttcacttcaacatcttgttcaaagaatctaatcactccatttctcatatcctcaagaacattcaa 28786333  T
Q  334 aggaatgccatgattgaccacttgaaagaaaccccatgtct 374  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28786334 aggaatgccatgattgaccacttgaaagaaaccccatgtct 28786374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 174 - 374
Target Start/End: Original strand, 28736619 - 28736819
Alignment:
Q  174 aagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgtatgaaaatggcctcattggatcacgagaatataactcttttttcac 273  Q
    |||||||||||||||| ||||||| ||||||||| | || |||||| ||||| ||    ||||||||  || |||| | || ||| | |||||| |||||    
T  28736619 aagtatccctccaattaagtgctggtgaactatacaaatcaaaattactattataaaccaatggccttgtttgatctctagtatacatctctttcttcac 28736718  T
Q  274 ttcaacatcttgttcaaagaatctaatcactccatttctcatatcctcaagaacattcaaaggaatgccatgattgaccacttgaaagaaaccccatgtc 373  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||||    
T  28736719 ttcaatatcttgttcaaagaatctaatcactccatctttcatatcctcaagaacatttataggaataccatgattaaccacttgaaagaaaccccatgtc 28736818  T
Q  374 t 374  Q
    |    
T  28736819 t 28736819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 174 - 374
Target Start/End: Original strand, 28743245 - 28743445
Alignment:
Q  174 aagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgtatgaaaatggcctcattggatcacgagaatataactcttttttcac 273  Q
    |||||||||||||||| || |||| ||||||||| | || |||||| ||||| ||    ||||||||  || |||| | || ||| | |||||| |||||    
T  28743245 aagtatccctccaattaagcgctggtgaactatacaaatcaaaattactattataaaccaatggccttgtttgatctctagtatacatctctttcttcac 28743344  T
Q  274 ttcaacatcttgttcaaagaatctaatcactccatttctcatatcctcaagaacattcaaaggaatgccatgattgaccacttgaaagaaaccccatgtc 373  Q
    ||||  ||||||||||||||||||||||||||||| | ||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||||    
T  28743345 ttcagtatcttgttcaaagaatctaatcactccatctttcatatcctcaagaacatttataggaataccatgattaaccacttgaaagaaaccccatgtc 28743444  T
Q  374 t 374  Q
    |    
T  28743445 t 28743445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 174 - 374
Target Start/End: Original strand, 28713345 - 28713545
Alignment:
Q  174 aagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgtatgaaaatggcctcattggatcacgagaatataactcttttttcac 273  Q
    |||||||||||||||| ||||||| ||| ||||| | || |||||||||||| ||    ||||||||  || |||| | || ||| | |||||| |||||    
T  28713345 aagtatccctccaattaagtgctggtgatctatacaaatcaaaattgctattataaaccaatggccttgttcgatctctagtatacatctctttcttcac 28713444  T
Q  274 ttcaacatcttgttcaaagaatctaatcactccatttctcatatcctcaagaacattcaaaggaatgccatgattgaccacttgaaagaaaccccatgtc 373  Q
    ||||  ||||||||||||||||||  ||||||||| | ||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||    
T  28713445 ttcagtatcttgttcaaagaatctcttcactccatctttcatatcttcaagaacattcaaaggaataccatgattaatcacttgaaagaaaccccatgtc 28713544  T
Q  374 t 374  Q
    |    
T  28713545 t 28713545  T

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Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2028667 - 2028440
Alignment:
Q  1 atataaaaaatattgaacacatctttaatctaaagtgtcgtttgtaccaatgaaaataactaaagttcaaggagcattgagcacataaattgtatatgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2028667 atataaaaaatattgaacacatctttaatctaaagtgtcgtttgtaccaatgaaaataactaaagttcaaggagcattgagcacataaattgtatatgca 2028568  T
Q  101 tgcatacaaacatacctgcatacaacaggaagatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctgatg 200  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2028567 tgcatacaaacatacctgcatacaacaggaaaatcttctggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctggtg 2028468  T
Q  201 aactataaagattaaaattgctattgta 228  Q
    | ||||| | || ||||||||| |||||    
T  2028467 agctatacaaatcaaaattgcttttgta 2028440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 1950435 - 1950553
Alignment:
Q  110 acatacctgcatacaacaggaagatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctgatgaactataaa 209  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| ||||| |    
T  1950435 acatacctgcatacaacaggaaaatcttgtggtttgggagtatcaggagccaagtaacaagcacaagtatccctccaattgagtgctggtgagctataca 1950534  T
Q  210 gattaaaattgctattgta 228  Q
     || ||||||||| |||||    
T  1950535 aatcaaaattgcttttgta 1950553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 10767731 - 10767615
Alignment:
Q  112 atacctgcatacaacaggaagatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctgatgaactataaaga 211  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||| ||| ||||||| |    
T  10767731 atacctgcatactacaggaatatcttctggtttgggagtatcaggagccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataaata 10767632  T
Q  212 ttaaaattgctattgta 228  Q
    | ||| || ||||||||    
T  10767631 tcaaagttactattgta 10767615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 2033099 - 2032979
Alignment:
Q  108 aaacatacctgcatacaacaggaagatcttgtggtttgggagtatca---ggagccaaggaacaagtacaagtatccctccaattgagtgctgatgaact 204  Q
    |||||||||||||||| |||||||  |||||||||||| ||||||||   ||||||||| ||||  || || ||||||||||||||||||||| ||| ||    
T  2033099 aaacatacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagct 2033000  T
Q  205 ataaagattaaaattgctatt 225  Q
    ||||| || |||||| |||||    
T  2032999 ataaatatcaaaattactatt 2032979  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 2050337 - 2050220
Alignment:
Q  108 aaacatacctgcatacaacaggaagatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctgatgaactata 207  Q
    ||||||||||||| ||  | |||| ||||| ||||||||||||||||||||||||| |||| | | || ||||||||||||||||||| |  || |||||    
T  2050337 aaacatacctgcacactgcgggaaaatcttctggtttgggagtatcaggagccaagtaacacgcaaaactatccctccaattgagtgccggagagctata 2050238  T
Q  208 aagattaaaattgctatt 225  Q
    || || |||||| |||||    
T  2050237 aatatcaaaattactatt 2050220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 2046526 - 2046408
Alignment:
Q  113 tacctgcatacaacaggaagatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctgatgaactataaa 209  Q
    ||||||||||| |||||||  |||| ||||||| ||||||||||   ||||||| |||||| | ||||||| |||||||||||||||| ||  |||||||    
T  2046526 tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2046427  T
Q  210 gattaaaattgctattgta 228  Q
     || | |||||||||||||    
T  2046426 tatcataattgctattgta 2046408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 2057280 - 2057180
Alignment:
Q  128 ggaagatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgt 227  Q
    |||| ||||| |||||| |||||||||||||||||| ||||| || || ||||||||||||||||||| |  || ||||||| || || |||||||||||    
T  2057280 ggaaaatcttctggttttggagtatcaggagccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctattgt 2057181  T
Q  228 a 228  Q
    |    
T  2057180 a 2057180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 2037149 - 2037031
Alignment:
Q  113 tacctgcatacaacaggaagatcttgtggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctgatgaactataaa 209  Q
    ||||||||||| |||||||  |||| ||||||  ||||||||||   ||||||| |||||| | ||||||| |||||||||||||||| ||  |||||||    
T  2037149 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 2037050  T
Q  210 gattaaaattgctattgta 228  Q
     || | |||||||||||||    
T  2037049 tatcataattgctattgta 2037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 2054346 - 2054223
Alignment:
Q  108 aaacatacctgcatacaacaggaagatcttgtggtttgggagtatca---ggagccaaggaacaagtacaagtatccctccaattgagtgctgatgaact 204  Q
    |||||||||||||||| |||||||  |||| ||||||| ||||||||   |||||||||  ||||  | || ||||| |||||||||||||||  || ||    
T  2054346 aaacatacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagct 2054247  T
Q  205 ataaagattaaaattgctattgta 228  Q
    ||||| || || ||||||||||||    
T  2054246 ataaatatcaacattgctattgta 2054223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 374
Target Start/End: Complemental strand, 2022327 - 2022147
Alignment:
Q  194 gctgatgaactataaagattaaaattgctattgtatgaaaatggcctcattggatcacgagaatataactcttttttcacttcaacatcttgttcaaaga 293  Q
    |||| |||||||||||||| |||||| ||||| ||    || ||| ||| ||||||||| |  ||||| ||| ||||||| |||  |||||| |||||||    
T  2022327 gctggtgaactataaagatcaaaattactattataaaccaaaggcttcactggatcacgtgtgtataattctcttttcacctcagaatcttgctcaaaga 2022228  T
Q  294 atctaatcactccatttctcatatcctcaagaacattcaaaggaatgccatgattgaccacttgaaagaaaccccatgtct 374  Q
    |||||| |||||||||  |||| || || | |||| |||     || |||||||| || | ||||||||||||||||||||    
T  2022227 atctaaccactccattcttcatctcatctaaaacactcacttctataccatgattaacaatttgaaagaaaccccatgtct 2022147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 1950343 - 1950410
Alignment:
Q  9 aatattgaacacatctttaatctaaagtgtcgtttgtaccaatgaaaataactaaagttcaaggagca 76  Q
    ||||||||| || ||||||||||||||||||| | |||||  ||| |||||| ||| |||||||||||    
T  1950343 aatattgaatacgtctttaatctaaagtgtcggtcgtaccggtgataataaccaaatttcaaggagca 1950410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 48908694 - 48908783
Alignment:
Q  108 aaacatacctgcatacaacaggaagatcttgtggtttgggagtatcaggagccaaggaacaagtacaagtatccctccaattgagtgctg 197  Q
    |||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||    
T  48908694 aaacatacctgcatactagaggaaaatcttctggtttgggagtatcaggagccaagaaacaaataaaagtatccctccaattgagcgctg 48908783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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